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Posted to dev@taverna.apache.org by "Stian Soiland-Reyes (JIRA)" <ji...@apache.org> on 2016/01/08 15:45:39 UTC
[jira] [Created] (TAVERNA-877) SCUFL2-reader for Common Workflow
Language workflows
Stian Soiland-Reyes created TAVERNA-877:
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Summary: SCUFL2-reader for Common Workflow Language workflows
Key: TAVERNA-877
URL: https://issues.apache.org/jira/browse/TAVERNA-877
Project: Apache Taverna
Issue Type: New Feature
Components: Taverna Language
Reporter: Stian Soiland-Reyes
Priority: Minor
Common Workflow Language
http://common-workflow-language.github.io/
..is an emerging standard for computational workflows with a focus on bioinformatics command line tools using Docker.
The semantics of CWL are inspired by Taverna's SCUFL2 model and the Wf4Ever wfdesc vocabulary.
A good first approximation for integration of CWL for Taverna would be to parse/read CWL workflows into the SCUFL2 model of Taverna Language.
Running CWL workflows can be achieved by interpreting CWL Tools (which are described in JSON) as a way to configure the Tool Activity with docker commands.
But this SCUFL2 reader can just represent the CWL configurations as-is.
There's an early Java SDK for CWL parsing just made, under development at https://github.com/common-workflow-language/cwljava/
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