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Posted to dev@sqoop.apache.org by "Hudson (JIRA)" <ji...@apache.org> on 2015/09/09 18:40:48 UTC

[jira] [Commented] (SQOOP-2513) Sqoop2: Deadlock occurs between getJobStatus and JobManager.UpdateThread#updateSubmission

    [ https://issues.apache.org/jira/browse/SQOOP-2513?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=14737157#comment-14737157 ] 

Hudson commented on SQOOP-2513:
-------------------------------

ABORTED: Integrated in Sqoop2 #893 (See [https://builds.apache.org/job/Sqoop2/893/])
SQOOP-2513: Sqoop2: Deadlock occurs between getJobStatus and JobManager.UpdateThread#updateSubmission (jarcec: https://git-wip-us.apache.org/repos/asf?p=sqoop.git&a=commit&h=826e5cc774b4ec9999950dbecc662950c0190358)
* repository/repository-common/src/main/java/org/apache/sqoop/repository/common/CommonRepositoryHandler.java


> Sqoop2: Deadlock occurs between getJobStatus and JobManager.UpdateThread#updateSubmission
> -----------------------------------------------------------------------------------------
>
>                 Key: SQOOP-2513
>                 URL: https://issues.apache.org/jira/browse/SQOOP-2513
>             Project: Sqoop
>          Issue Type: Bug
>            Reporter: Dian Fu
>            Assignee: Dian Fu
>            Priority: Critical
>             Fix For: 1.99.7
>
>         Attachments: SQOOP-2513.001.patch, SQOOP-2513.002.patch, SQOOP-2513.003.patch, SQOOP-2513.004.patch
>
>
> I encountered the following test failure log in the test of SQOOP-2439:
> {noformat}
> java.sql.SQLTransactionRollbackException: A lock could not be obtained due to a deadlock, cycle of locks and waiters is:
> Lock : ROW, SQ_JOB_INPUT, (1,187)
> Waiting XID : {15543, S} , SA, SELECT "SQI_ID", "SQI_NAME", "SQI_CONFIG", "SQI_INDEX", "SQI_TYPE", "SQI_STRMASK", "SQI_STRLENGTH", "SQI_EDITABLE", "SQI_ENUMVALS", "SQBI_VALUE" FROM "SQOOP"."SQ_INPUT" LEFT OUTER JOIN "SQOOP"."SQ_JOB_INPUT" ON "SQBI_INPUT" = "SQI_ID" AND  "SQBI_JOB" = ? WHERE "SQI_CONFIG" = ? ORDER BY "SQI_INDEX"  Granted XID : {15545, X}
> Lock : ROW, SQ_JOB, (1,17)
> Waiting XID : {15545, X} , SA, UPDATE "SQOOP"."SQ_JOB" SET "SQB_NAME" = ?, "SQB_UPDATE_USER" = ?, "SQB_UPDATE_DATE" = ?  WHERE "SQB_ID" = ?  Granted XID : {15543, S} . The selected victim is XID : 15543. at
> org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)     at 
> org.apache.derby.impl.jdbc.Util.generateCsSQLException(Unknown Source)       at 
> org.apache.derby.impl.jdbc.TransactionResourceImpl.wrapInSQLException(Unknown Source)        at org.apache.derby.impl.jdbc.TransactionResourceImpl.handleException(Unknown Source)   at 
> org.apache.derby.impl.jdbc.EmbedConnection.handleException(Unknown Source)   at 
> org.apache.derby.impl.jdbc.ConnectionChild.handleException(Unknown Source)   at 
> org.apache.derby.impl.jdbc.EmbedStatement.executeStatement(Unknown Source)   at 
> org.apache.derby.impl.jdbc.EmbedPreparedStatement.executeStatement(Unknown Source)   at 
> org.apache.derby.impl.jdbc.EmbedPreparedStatement.executeQuery(Unknown Source)       at 
> org.apache.commons.dbcp.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:96)        at 
> org.apache.commons.dbcp.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:96)        at 
> org.apache.commons.dbcp.DelegatingPreparedStatement.executeQuery(DelegatingPreparedStatement.java:96)        at 
> org.apache.sqoop.repository.common.CommonRepositoryHandler.loadDriverConfigs(CommonRepositoryHandler.java:2265)    at 
> org.apache.sqoop.repository.common.CommonRepositoryHandler.loadJobs(CommonRepositoryHandler.java:1876)       at 
> org.apache.sqoop.repository.common.CommonRepositoryHandler.findJob(CommonRepositoryHandler.java:885) at 
> org.apache.sqoop.repository.JdbcRepository$20.doIt(JdbcRepository.java:500)  at 
> org.apache.sqoop.repository.JdbcRepository.doWithConnection(JdbcRepository.java:92)  at 
> org.apache.sqoop.repository.JdbcRepository.doWithConnection(JdbcRepository.java:63)  at 
> org.apache.sqoop.repository.JdbcRepository.findJob(JdbcRepository.java:497)  at 
> org.apache.sqoop.driver.JobManager.getJob(JobManager.java:438)       at 
> org.apache.sqoop.driver.JobManager.invokeDestroyerOnJobSuccess(JobManager.java:517)  at 
> org.apache.sqoop.driver.JobManager.updateSubmission(JobManager.java:655)     at 
> org.apache.sqoop.driver.JobManager.status(JobManager.java:636)       at 
> org.apache.sqoop.handler.JobRequestHandler.getJobStatus(JobRequestHandler.java:410)  at 
> org.apache.sqoop.handler.JobRequestHandler.handleEvent(JobRequestHandler.java:102)   at 
> org.apache.sqoop.server.v1.JobServlet.handleGetRequest(JobServlet.java:86)   at 
> org.apache.sqoop.server.SqoopProtocolServlet.doGet(SqoopProtocolServlet.java:48)     at 
> javax.servlet.http.HttpServlet.service(HttpServlet.java:617) at javax.servlet.http.HttpServlet.service(HttpServlet.java:723) at 
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)    at 
> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)    at 
> org.apache.hadoop.security.authentication.server.AuthenticationFilter.doFilter(AuthenticationFilter.java:572)        at 
> org.apache.hadoop.security.token.delegation.web.DelegationTokenAuthenticationFilter.doFilter(DelegationTokenAuthenticationFilter.java:269)   at org.apache.hadoop.security.authentication.server.AuthenticationFilter.doFilter(AuthenticationFilter.java:542)        at 
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)    at 
> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)    at 
> org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)  at 
> org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)  at 
> org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)        at 
> org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:103)        at 
> org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:615)    at 
> org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)    at 
> org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)  at 
> org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:861)   at 
> org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:606)
> {noformat}
> From the above log, we can see that transaction {{15543}} has the shared lock of table {{SQ_JOB}} and is requesting the shared lock of table {{SQ_JOB_INPUT}}, while transaction {{15545}} has the exclusive lock of table {{SQ_JOB_INPUT}} and is requesting the shared lock of table {{SQ_JOB}}. Deadlock occurs between these two transactions.
> PS: transaction {{15543}} is a thread calling {{JobManager#getJobStatus}}  and transaction {{15545}} is the updatethread in {{JobManager}} which is calling {{updateSubmission}}.



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