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Posted to dev@zeppelin.apache.org by bzz <gi...@git.apache.org> on 2015/12/01 09:48:49 UTC
[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
GitHub user bzz opened a pull request:
https://github.com/apache/incubator-zeppelin/pull/497
ZEPPELIN-143: Git as a versioned notebook storage
This is very basic implementation of the [ZEPPELIN-143](https://issues.apache.org/jira/browse/ZEPPELIN-143) at the backend.
It makes a local git repository our of your `/notebook` dir and commits a new revision for each save/update.
It does not:
- add any remotes to the git repo. It is totally possible to do that manually though. It would be interesting to add this later, to be able to push the notebook to hostings like GH
- have any GUI modifications. It is left as further work, to add the ability for a user to switch "versions" of the notebook, navigating between previous runs.
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/bzz/incubator-zeppelin add-git-notebook-repo
Alternatively you can review and apply these changes as the patch at:
https://github.com/apache/incubator-zeppelin/pull/497.patch
To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:
This closes #497
----
commit cf0b4bc1dcd59dc49186154baa3e866538648898
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-11-25T06:55:39Z
Small cleanup: JavaDoc, annotations, warning for NotebookRepos
commit c21b3e632a211250519e96e81a7cc27197d9106d
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-11-25T08:47:40Z
ZEPPELIN-143: WIP - very basic sketch of GitNotebookRepo
commit 20a93a454bb4bdec41cd78962339424e015fca29
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-11-30T03:32:02Z
ZEPPELIN-143: adding JGit as initial impl
commit bdee039bfdce57b0b8235ab4e6c45e5f19264e3e
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-01T06:23:09Z
ZEPPELIN-143: simple case save() implemented
commit 4ef879a24e4f646b3f5fb19bc8eb36bff9c869de
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-01T07:01:08Z
ZEPPELIN-143: initial repo creation + tests
commit 274830f128f8b5500a64b6e3773247bd984ca4b7
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-01T07:27:14Z
ZEPPELIN-143: .history() implemented
commit 8d66c5136b5eaa831366758fc8160fbb4ef7f973
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-01T08:21:32Z
ZEPPELIN-143: docs and conf updated
commit 85de7376acabdd8d2a0bf781d3f7fb6ee8a5e8bd
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-01T08:48:37Z
ZEPPELIN-143: last-minute cleanup
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161514669
In 5d7ffea `.close()` lifecycle method was introduced for the `NotebookRero` to cleanup the resources that storage implementation might have occupied.
As this is an API change \cc @khalidhuseynov and @Leemoonsoo who worked on this before, as I recall, to take a quick look.
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161593921
New CI failure - cassandra interpreter tests
```
[INFO] Zeppelin: Lens interpreter ......................... SUCCESS [ 3.570 s]
[INFO] Zeppelin: Cassandra ................................ FAILURE [ 33.880 s]
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 21.414 sec <<< FAILURE! - in org.apache.zeppelin.cassandra.CassandraInterpreterTest
org.apache.zeppelin.cassandra.CassandraInterpreterTest Time elapsed: 21.414 sec <<< ERROR!
java.lang.ExceptionInInitializerError: null
at com.datastax.driver.core.exceptions.NoHostAvailableException.copy(NoHostAvailableException.java:84)
at com.datastax.driver.core.DefaultResultSetFuture.extractCauseFromExecutionException(DefaultResultSetFuture.java:269)
at com.datastax.driver.core.DefaultResultSetFuture.getUninterruptibly(DefaultResultSetFuture.java:183)
at com.datastax.driver.core.AbstractSession.execute(AbstractSession.java:52)
at info.archinnov.achilles.script.ScriptExecutor.executeScript(ScriptExecutor.java:58)
at info.archinnov.achilles.embedded.AchillesInitializer.executeStartupScripts(AchillesInitializer.java:194)
at info.archinnov.achilles.embedded.AchillesInitializer.initialize(AchillesInitializer.java:97)
at info.archinnov.achilles.embedded.AchillesInitializer.initializeFromParameters(AchillesInitializer.java:60)
at info.archinnov.achilles.embedded.CassandraEmbeddedServer.<init>(CassandraEmbeddedServer.java:76)
at info.archinnov.achilles.junit.AchillesResource.initResource(AchillesResource.java:59)
at info.archinnov.achilles.junit.AchillesResource.<init>(AchillesResource.java:52)
at info.archinnov.achilles.junit.AchillesResourceBuilder.build(AchillesResourceBuilder.java:205)
at org.apache.zeppelin.cassandra.CassandraInterpreterTest.<clinit>(CassandraInterpreterTest.java:62)
Caused by: com.datastax.driver.core.exceptions.NoHostAvailableException: All host(s) tried for query failed (tried: localhost/127.0.0.1:9267 (com.datastax.driver.core.OperationTimedOutException: [localhost/127.0.0.1:9267] Operation timed out))
at com.datastax.driver.core.RequestHandler.reportNoMoreHosts(RequestHandler.java:216)
at com.datastax.driver.core.RequestHandler.access$900(RequestHandler.java:45)
at com.datastax.driver.core.RequestHandler$SpeculativeExecution.sendRequest(RequestHandler.java:276)
at com.datastax.driver.core.RequestHandler$SpeculativeExecution$1.run(RequestHandler.java:374)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:745)
```
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by khalidhuseynov <gi...@git.apache.org>.
Github user khalidhuseynov commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-160998197
This CI problem should be solved by #468, may need to rebase for that
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161086968
looks good! thanks for working on this. looking forward to git push ;)
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-162388927
@Leemoonsoo thank you for kind reminder! Will do it and ping back
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161223135
Guys, thanks for reviews, appreciate that a lot!
Will address each of them in next couple of days.
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161593960
re-triggering CI build
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by Leemoonsoo <gi...@git.apache.org>.
Github user Leemoonsoo commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161903273
@bzz Tested and working really well. And the API looks fine.
Could you also take care `zeppelin-distribution/src/bin_license/LICENSE` for newly added dependency, jgit? jgit and it's transitive dependency looks like
```
+- org.eclipse.jgit:org.eclipse.jgit:jar:4.1.1.201511131810-r:compile
+- com.jcraft:jsch:jar:0.1.53:compile
+- com.googlecode.javaewah:JavaEWAH:jar:0.7.9:compile
+- org.apache.httpcomponents:httpclient:jar:4.3.6:compile
\- org.eclipse.jdt:org.eclipse.jdt.annotation:jar:1.1.0:compile
```
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-160909698
CI fails with
```
Results :
Failed tests:
NotebookTest.testAbortParagraphStatusOnInterpreterRestart:347 expected:<ABORT> but was:<RUNNING>
Tests run: 34, Failures: 1, Errors: 0, Skipped: 0
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Zeppelin ........................................... SUCCESS [ 12.289 s]
[INFO] Zeppelin: Interpreter .............................. SUCCESS [01:18 min]
[INFO] Zeppelin: Zengine .................................. FAILURE [ 8.411 s]
.....
Tests run: 10, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 3.662 sec <<< FAILURE! - in org.apache.zeppelin.notebook.NotebookTest
testAbortParagraphStatusOnInterpreterRestart(org.apache.zeppelin.notebook.NotebookTest) Time elapsed: 0.108 sec <<< FAILURE!
java.lang.AssertionError: expected:<ABORT> but was:<RUNNING>
at org.junit.Assert.fail(Assert.java:88)
at org.junit.Assert.failNotEquals(Assert.java:743)
at org.junit.Assert.assertEquals(Assert.java:118)
at org.junit.Assert.assertEquals(Assert.java:144)
at org.apache.zeppelin.notebook.NotebookTest.testAbortParagraphStatusOnInterpreterRestart(NotebookTest.java:347)
```
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by asfgit <gi...@git.apache.org>.
Github user asfgit closed the pull request at:
https://github.com/apache/incubator-zeppelin/pull/497
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-162422001
Thank all participants for kind reviews!
@Leemoonsoo could you check 468a858 and let me know if you think that is enough?
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by jeffsteinmetz <gi...@git.apache.org>.
Github user jeffsteinmetz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161182695
Is there a document (or could one be added) that describes setting up the Git repo integration (git ssh or https path, connecting Zeppelin to a specific git repo, passwords, ssh keys, etc.)?
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161681181
CI passes now, ready to be merged.
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by khalidhuseynov <gi...@git.apache.org>.
Github user khalidhuseynov commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161717615
@bzz thanks for starting this feature! `.close()` is required in this case and is fine to add to API. LGTM
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161499767
@jeffsteinmetz @felixcheung well noted, this PR introduces automation to keep notebook dir inside the git repository in your local filesystem.
Right now, this repository does not have any 'remotes' setup, and Zeppelin does not push it anywhere, so there are no Zeppelin configuration needed (except documented property change).
It is possible and quite simple to sync this local repo manually by `cd notebooks; git add remote ...; git push`, as well as I can add this ability to Zeppelin itself, if people find it useful (in the separate PR).
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz closed the pull request at:
https://github.com/apache/incubator-zeppelin/pull/497
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-160897963
\cc @Leemoonsoo @jongyoul @felixcheung @khalidhuseynov for a review
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-162729685
Thank you!
Merging if there is no more discussion
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
Github user bzz commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161505737
@khalidhuseynov thanks for looking into CI problem, that's a bummer!
> This CI problem should be solved by #468, may need to rebase for that
It looks like it was merged 6 days ago, so current branch should be on top of it already, but just in case - I have synced with the latest master and it seems to pass! If that repeats - will file the jira issue with label 'flaky-test'.
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by felixcheung <gi...@git.apache.org>.
Github user felixcheung commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-161413229
@jeffsteinmetz I think this is committing to local only, no remote repo support yet
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by Leemoonsoo <gi...@git.apache.org>.
Github user Leemoonsoo commented on the pull request:
https://github.com/apache/incubator-zeppelin/pull/497#issuecomment-162663522
Thanks @bzz Looks good to me!
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[GitHub] incubator-zeppelin pull request: ZEPPELIN-143: Git as a versioned ...
Posted by bzz <gi...@git.apache.org>.
GitHub user bzz reopened a pull request:
https://github.com/apache/incubator-zeppelin/pull/497
ZEPPELIN-143: Git as a versioned notebook storage
This is very basic implementation of the [ZEPPELIN-143](https://issues.apache.org/jira/browse/ZEPPELIN-143) at the backend.
It makes a local git repository our of your `/notebook` dir and commits a new revision for each save/update.
It does not:
- add any remotes to the git repo. It is totally possible to do that manually though. It would be interesting to add this later, to be able to push the notebook to hostings like GH
- have any GUI modifications. It is left as further work, to add the ability for a user to switch "versions" of the notebook, navigating between previous runs.
Feedback is very welcome!
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/bzz/incubator-zeppelin add-git-notebook-repo
Alternatively you can review and apply these changes as the patch at:
https://github.com/apache/incubator-zeppelin/pull/497.patch
To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:
This closes #497
----
commit cf0b4bc1dcd59dc49186154baa3e866538648898
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-11-25T06:55:39Z
Small cleanup: JavaDoc, annotations, warning for NotebookRepos
commit c21b3e632a211250519e96e81a7cc27197d9106d
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-11-25T08:47:40Z
ZEPPELIN-143: WIP - very basic sketch of GitNotebookRepo
commit 20a93a454bb4bdec41cd78962339424e015fca29
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-11-30T03:32:02Z
ZEPPELIN-143: adding JGit as initial impl
commit bdee039bfdce57b0b8235ab4e6c45e5f19264e3e
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-01T06:23:09Z
ZEPPELIN-143: simple case save() implemented
commit 4ef879a24e4f646b3f5fb19bc8eb36bff9c869de
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-01T07:01:08Z
ZEPPELIN-143: initial repo creation + tests
commit 274830f128f8b5500a64b6e3773247bd984ca4b7
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-01T07:27:14Z
ZEPPELIN-143: .history() implemented
commit 8d66c5136b5eaa831366758fc8160fbb4ef7f973
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-01T08:21:32Z
ZEPPELIN-143: docs and conf updated
commit 85de7376acabdd8d2a0bf781d3f7fb6ee8a5e8bd
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-01T08:48:37Z
ZEPPELIN-143: last-minute cleanup
commit 94720d9adecdf397da8f9a93dc30426243cfe578
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-03T02:53:16Z
Merge branch 'master' into add-git-notebook-repo
commit fca2300a78adf088b834cdc123c0e54acffffc49
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-03T03:45:17Z
ZEPPELIN-143: general Notebook storage doc update
commit 978e62ca8fb7ece51cee95c3eb411f1c6b6ee357
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-03T03:47:28Z
ZEPPELIN-143: muting down the logs
commit 5d7ffea497f5d7d08e50f4ccaba4201b6d13db6b
Author: Alexander Bezzubov <bz...@apache.org>
Date: 2015-12-03T04:44:55Z
ZEPPELIN-143: introduce NotebookRepo.close()
----
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