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Posted to github@arrow.apache.org by GitBox <gi...@apache.org> on 2020/08/03 13:09:13 UTC
[GitHub] [arrow] jorisvandenbossche opened a new pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by installing additional test dependencies
jorisvandenbossche opened a new pull request #7891:
URL: https://github.com/apache/arrow/pull/7891
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-684657833
The cli exit code failures are still present (see eg the first test output from my comment above https://github.com/apache/arrow/pull/7891#issuecomment-670478968)
I couldn't reproduce this locally, it might be that the CLI is not properly working in the docker environment on CI?
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-670479036
@github-actions crossbow submit test-conda-python-3.7-kartothek-latest test-conda-python-3.7-kartothek-master
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[GitHub] [arrow] github-actions[bot] commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-668042609
Revision: b9a439c20d5872b30ff054be5f5dcdb07810fd32
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|test-conda-python-3.7-kartothek-latest|[](https://github.com/ursa-labs/crossbow/actions?query=branch:actions-461-github-test-conda-python-3.7-kartothek-latest)|
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[GitHub] [arrow] github-actions[bot] commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-684519635
Revision: 4fec7126a660beba6e0723dff20ea8de18e0e828
Submitted crossbow builds: [ursa-labs/crossbow @ actions-505](https://github.com/ursa-labs/crossbow/branches/all?query=actions-505)
|Task|Status|
|----|------|
|test-conda-python-3.7-kartothek-latest|[](https://github.com/ursa-labs/crossbow/actions?query=branch:actions-505-github-test-conda-python-3.7-kartothek-latest)|
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-684788307
> The failing tests are all connected to a CLI and I don't think this is relevant for this integration tests.
Yes, I was also thinking to simply skip those tests here
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[GitHub] [arrow] fjetter commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
fjetter commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-684771320
Ok, at least the failures connected to extensionarrays are gone. I'll try to reproduce these failures or figure out another way to deal with this. The failing tests are all connected to a CLI and I don't think this is relevant for this integration tests.
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by installing additional test dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-668013896
cc @xhochy
Not a very robust fix (future-wise) in case other test dependencies get added, but not sure if there is a better way (we could in principle use their `conda-test-requirements.txt` file), and this at least fix it I think.
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-675350758
@fjetter Thanks!
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-673313902
@github-actions crossbow submit test-conda-python-3.7-kartothek-latest test-conda-python-3.7-kartothek-master
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[GitHub] [arrow] github-actions[bot] commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by installing additional test dependencies
Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-668018562
https://issues.apache.org/jira/browse/ARROW-9629
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[GitHub] [arrow] pitrou commented on a change in pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
pitrou commented on a change in pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#discussion_r465746913
##########
File path: ci/docker/conda-python-kartothek.dockerfile
##########
@@ -32,7 +32,14 @@ RUN conda install -c conda-forge -q \
storefact \
toolz \
urlquote \
- zstandard && \
+ zstandard \
+ attrs \
Review comment:
Can we keep those deps in alphabetical order?
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-670478968
cc @fjetter @xhochy in case if are familiar with those failures
There are several failures like this (related to exit codes):
```
_________________________________ test_simple __________________________________
cli = <function cli.<locals>._cli at 0x7ff27b5fed40>
built_cube = Cube(dimension_columns=('x', 'y'), partition_columns=('p', 'q'), uuid_prefix='my_cube', seed_dataset='source', index_columns=frozenset({'i2', 'i1'}))
mock_prompt = <function mock_prompt.<locals>._f at 0x7ff27b5b6830>
df_complete = i1 i2 p ... v2 x y
0 True 2018-01-01 0 ... ... 8, 9] 1 0
3 False 2019-01-01 0 ... [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13,... 1 1
[4 rows x 9 columns]
skv = None
def test_simple(cli, built_cube, mock_prompt, df_complete, skv):
mock_prompt(["", ""]) # conditions # payload
result = cli("--store=cubes", "my_cube", "query", input="df\n")
str_df = str(df_complete.loc[:, ["p", "q", "x", "y"]].reset_index(drop=True))
> assert result.exit_code == 1
E assert 2 == 1
E + where 2 = <Result SystemExit(2)>.exit_code
/kartothek/tests/cli/test_query.py:64: AssertionError
```
and there are a few failures like
```
________ test_predicate_pushdown_null_col[True-serialiser4-df3-value3] _________
store = <conftest.FakeStore object at 0x7ff242feef50>, df = t
0 NaT
value = Timestamp('2017-01-01 00:00:00'), predicate_pushdown_to_io = True
serialiser = CsvSerializer(compress=True)
@pytest.mark.parametrize(
"df,value",
[
(pd.DataFrame({"u": pd.Series([None], dtype=object)}), "foo"),
(pd.DataFrame({"b": pd.Series([None], dtype=object)}), b"foo"),
(pd.DataFrame({"f": pd.Series([np.nan], dtype=float)}), 1.2),
(
pd.DataFrame({"t": pd.Series([pd.NaT], dtype="datetime64[ns]")}),
pd.Timestamp("2017"),
),
],
)
@predicate_serialisers
@pytest.mark.parametrize("predicate_pushdown_to_io", [True, False])
def test_predicate_pushdown_null_col(
store, df, value, predicate_pushdown_to_io, serialiser
):
key = serialiser.store(store, "prefix", df)
expected = df.iloc[[]].copy()
predicates = [[(df.columns[0], "==", value)]]
result = serialiser.restore_dataframe(
store,
key,
predicate_pushdown_to_io=predicate_pushdown_to_io,
predicates=predicates,
)
pdt.assert_frame_equal(
result.reset_index(drop=True),
expected.reset_index(drop=True),
> check_dtype=serialiser.type_stable,
)
tests/serialization/test_dataframe.py:529:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
left = array([], dtype=float64)
right = <DatetimeArray>
[]
Length: 0, dtype: datetime64[ns], check_dtype = True
index_values = array([], dtype=int64)
check_less_precise = <object object at 0x7ff2986040f0>, check_exact = False
rtol = 1e-05, atol = 1e-08
> assert isinstance(left, ExtensionArray), "left is not an ExtensionArray"
E AssertionError: left is not an ExtensionArray
/opt/conda/envs/arrow/lib/python3.7/site-packages/pandas/_testing.py:1175: AssertionError
```
Since this is related to a pandas testing utility, does kartothek already support pandas 1.1?
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-684789652
@github-actions crossbow submit test-conda-python-3.7-kartothek-latest test-conda-python-3.7-kartothek-master
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[GitHub] [arrow] fjetter commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
fjetter commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-675336307
@jorisvandenbossche We've had a few issues with pandas 1.1.0. I'll ping again once we have a compatible release. Thanks for looking into this!
xref
https://github.com/JDASoftwareGroup/kartothek/pull/328
https://github.com/JDASoftwareGroup/kartothek/pull/332
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[GitHub] [arrow] fjetter commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
fjetter commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-682471147
@jorisvandenbossche Kartothek 3.14.0 is out and should be compatible with pandas and arrow now.
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[GitHub] [arrow] github-actions[bot] commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-684790578
Revision: 8f81f9ee1c377a4319c99a06e29e6aef20a3bf35
Submitted crossbow builds: [ursa-labs/crossbow @ actions-506](https://github.com/ursa-labs/crossbow/branches/all?query=actions-506)
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[GitHub] [arrow] github-actions[bot] commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-670479711
Revision: e21e9ff23f98427d1898f8de99945549e2fabe12
Submitted crossbow builds: [ursa-labs/crossbow @ actions-468](https://github.com/ursa-labs/crossbow/branches/all?query=actions-468)
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-684827752
Ah, green now ;)
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-684518433
@github-actions crossbow submit test-conda-python-3.7-kartothek-latest test-conda-python-3.7-kartothek-master
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[GitHub] [arrow] github-actions[bot] commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-668184404
Revision: c9343cb57685e6deb5ec5e871e4cbf1d8bc38138
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[GitHub] [arrow] github-actions[bot] commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-673314803
Revision: 701b2fd037b4bd42b82536cbf6ffeef79791d28a
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[GitHub] [arrow] jorisvandenbossche commented on a change in pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on a change in pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#discussion_r466989211
##########
File path: ci/docker/conda-python-kartothek.dockerfile
##########
@@ -32,7 +32,14 @@ RUN conda install -c conda-forge -q \
storefact \
toolz \
urlquote \
- zstandard && \
+ zstandard \
+ attrs \
Review comment:
Updated
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by installing additional test dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-668014250
@github-actions crossbow submit test-conda-python-3.7-kartothek-latest test-conda-python-3.7-kartothek-master
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[GitHub] [arrow] jorisvandenbossche closed pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche closed pull request #7891:
URL: https://github.com/apache/arrow/pull/7891
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-668209458
The tests now run, but there are some actual failures now: see eg https://github.com/ursa-labs/crossbow/runs/941860497?check_suite_focus=true
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[GitHub] [arrow] github-actions[bot] commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by installing additional test dependencies
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-668183196
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[GitHub] [arrow] jorisvandenbossche commented on pull request #7891: ARROW-9629: [Python] Fix kartothek integration tests by fixing dependencies
Posted by GitBox <gi...@apache.org>.
jorisvandenbossche commented on pull request #7891:
URL: https://github.com/apache/arrow/pull/7891#issuecomment-668041763
@github-actions crossbow submit test-conda-python-3.7-kartothek-latest test-conda-python-3.7-kartothek-master
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