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Posted to issues@spark.apache.org by "Sam Stoelinga (JIRA)" <ji...@apache.org> on 2016/01/22 14:43:39 UTC
[jira] [Commented] (SPARK-12947) Spark with Swift throws
EOFException when reading parquet file
[ https://issues.apache.org/jira/browse/SPARK-12947?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15112408#comment-15112408 ]
Sam Stoelinga commented on SPARK-12947:
---------------------------------------
I've been hitting this issue constantly currently on large datasets. Will try to use Tachyon in between Swift and Spark to see if it solves the issue.
> Spark with Swift throws EOFException when reading parquet file
> --------------------------------------------------------------
>
> Key: SPARK-12947
> URL: https://issues.apache.org/jira/browse/SPARK-12947
> Project: Spark
> Issue Type: Bug
> Components: ML, SQL
> Affects Versions: 1.6.0
> Environment: Spark 1.6.0-SNAPSHOT
> Reporter: Sam Stoelinga
>
> I'm using Swift as underlying storage for my spark jobs but it sometimes throws EOFExceptions for some parts of the data.
> Another user has hit the same issue: http://stackoverflow.com/questions/32400137/spark-swift-integration-parquet
> Code to reproduce:
> ```
> val features = sqlContext.read.parquet(featurePath)
> // Flatten the features into the array exploded
> val exploded = features.select(explode(features("features"))).toDF("features")
> val kmeans = new KMeans()
> .setK(k)
> .setFeaturesCol("features")
> .setPredictionCol("prediction")
> val model = kmeans.fit(exploded)
> ```
> val features is a dataframe with 2 columns:
> image: String, features: Array[Vector]
> val exploded is a dataframe with a single column:
> features: Vector
> The following exception is shown when running takeSample on a large dataset saved as parquet file (~1+GB):
> java.io.EOFException
> at java.io.DataInputStream.readFully(DataInputStream.java:197)
> at java.io.DataInputStream.readFully(DataInputStream.java:169)
> at org.apache.parquet.hadoop.ParquetFileReader$ConsecutiveChunkList.readAll(ParquetFileReader.java:756)
> at org.apache.parquet.hadoop.ParquetFileReader.readNextRowGroup(ParquetFileReader.java:494)
> at org.apache.parquet.hadoop.InternalParquetRecordReader.checkRead(InternalParquetRecordReader.java:127)
> at org.apache.parquet.hadoop.InternalParquetRecordReader.nextKeyValue(InternalParquetRecordReader.java:208)
> at org.apache.parquet.hadoop.ParquetRecordReader.nextKeyValue(ParquetRecordReader.java:201)
> at org.apache.spark.rdd.SqlNewHadoopRDD$$anon$1.hasNext(SqlNewHadoopRDD.scala:168)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371)
> at scala.collection.Iterator$$anon$12.hasNext(Iterator.scala:350)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.rdd.RDD$$anonfun$zip$1$$anonfun$apply$30$$anon$1.hasNext(RDD.scala:827)
> at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:327)
> at org.apache.spark.util.Utils$.getIteratorSize(Utils.scala:1563)
> at org.apache.spark.rdd.RDD$$anonfun$count$1.apply(RDD.scala:1119)
> at org.apache.spark.rdd.RDD$$anonfun$count$1.apply(RDD.scala:1119)
> at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1840)
> at org.apache.spark.SparkContext$$anonfun$runJob$5.apply(SparkContext.scala:1840)
> at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
> at org.apache.spark.scheduler.Task.run(Task.scala:88)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745)
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