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Posted to commits@taverna.apache.org by st...@apache.org on 2015/02/17 21:36:43 UTC

[12/28] incubator-taverna-common-activities git commit: Temporarily empty repository

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/main/java/net/sf/taverna/wsdl/xmlsplitter/XMLSplitterSerialisationHelper.java
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diff --git a/taverna-wsdl-generic/src/main/java/net/sf/taverna/wsdl/xmlsplitter/XMLSplitterSerialisationHelper.java b/taverna-wsdl-generic/src/main/java/net/sf/taverna/wsdl/xmlsplitter/XMLSplitterSerialisationHelper.java
deleted file mode 100644
index e6e0fbb..0000000
--- a/taverna-wsdl-generic/src/main/java/net/sf/taverna/wsdl/xmlsplitter/XMLSplitterSerialisationHelper.java
+++ /dev/null
@@ -1,359 +0,0 @@
-/*
- * Copyright (C) 2003 The University of Manchester 
- *
- * Modifications to the initial code base are copyright of their
- * respective authors, or their employers as appropriate.  Authorship
- * of the modifications may be determined from the ChangeLog placed at
- * the end of this file.
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation; either version 2.1 of
- * the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public
- * License along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA.
- *
- ****************************************************************
- * Source code information
- * -----------------------
- * Filename           $RCSfile: XMLSplitterSerialisationHelper.java,v $
- * Revision           $Revision: 1.2 $
- * Release status     $State: Exp $
- * Last modified on   $Date: 2008/08/08 10:28:08 $
- *               by   $Author: stain $
- * Created on 16-May-2006
- *****************************************************************/
-package net.sf.taverna.wsdl.xmlsplitter;
-
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.Iterator;
-import java.util.List;
-
-import net.sf.taverna.wsdl.parser.ArrayTypeDescriptor;
-import net.sf.taverna.wsdl.parser.AttributeTypeDescriptor;
-import net.sf.taverna.wsdl.parser.BaseTypeDescriptor;
-import net.sf.taverna.wsdl.parser.ComplexTypeDescriptor;
-import net.sf.taverna.wsdl.parser.TypeDescriptor;
-
-import org.apache.log4j.Logger;
-import org.jdom.Content;
-import org.jdom.Element;
-import org.jdom.Namespace;
-
-/**
- * A helper class that supports the XMLOutputSplitter and XMLInputSplitter,
- * providing the ability for each to be serialised/deserialised to and from the
- * extensions XML for the ScuflModel XML when storing a workflow. This XML
- * describes the TypeDescriptor tree that the Splitter wraps.
- * 
- * @author Stuart Owen
- * @author Asger Askov-Bleking
- * 
- */
-
-public class XMLSplitterSerialisationHelper {
-
-	public final static Namespace XScuflNS = Namespace.getNamespace("s",
-			"http://org.embl.ebi.escience/xscufl/0.1alpha");
-
-	private static Logger logger = Logger
-			.getLogger(XMLSplitterSerialisationHelper.class);
-
-	/**
-	 * Generates the extensions XML that describes the TypeDescriptor to allow
-	 * an XMLInputSplitter or XMLOutputSplitter to be reconstructed using
-	 * consumeXML.
-	 */
-	public static Element typeDescriptorToExtensionXML(TypeDescriptor descriptor) {
-		Element result = new Element("extensions", XScuflNS);
-		Element type = null;
-		if (descriptor instanceof ComplexTypeDescriptor) {
-			type = constructElementForComplexType(
-					(ComplexTypeDescriptor) descriptor, new ArrayList<String>());
-		}
-		else if (descriptor instanceof ArrayTypeDescriptor) {
-			type = constructElementForArrayType(
-					(ArrayTypeDescriptor) descriptor, new ArrayList<String>());
-		}
-		result.addContent(type);
-		return result;
-	}
-
-	/**
-	 * Generates the TypeDescriptor structurefrom the extensions XML element
-	 * provided. This assumes that the root of the structure is <complextype/>.
-	 * This will be the same xml generated by provideXML.
-	 */
-	public static TypeDescriptor extensionXMLToTypeDescriptor(Element element) {
-		Element child = (Element) element.getChildren().get(0);
-		return buildTypeDescriptorFromElement(child,
-				new HashMap<String, TypeDescriptor>());
-	}
-
-	private static Element constructElementForArrayType(
-			ArrayTypeDescriptor descriptor, List<String> existingsTypes) {
-		Element result = new Element("arraytype", XScuflNS);
-		if (existingsTypes.contains(descriptor.getQname().toString())) {
-			result.setAttribute("id", descriptor.getQname().toString());
-			populateElement(result, descriptor);
-			result.removeAttribute("qname");
-		} else {
-			existingsTypes.add(descriptor.getQname().toString());
-			populateElement(result, descriptor);
-			Element elementType = new Element("elementtype", XScuflNS);
-			if (descriptor.getElementType() instanceof ComplexTypeDescriptor) {
-				elementType.addContent(constructElementForComplexType(
-						(ComplexTypeDescriptor) descriptor.getElementType(),
-						existingsTypes));
-			} else if (descriptor.getElementType() instanceof ArrayTypeDescriptor) {
-				elementType.addContent(constructElementForArrayType(
-						(ArrayTypeDescriptor) descriptor.getElementType(),
-						existingsTypes));
-			} else if (descriptor.getElementType() instanceof BaseTypeDescriptor) {
-				Element element = new Element("basetype", XScuflNS);
-				populateElement(element, descriptor.getElementType());
-				elementType.addContent(element);
-			}
-			result.addContent(elementType);
-		}
-		return result;
-	}
-
-	private static Element constructElementForComplexType(
-			ComplexTypeDescriptor descriptor, List<String> existingsTypes) {
-		Element result = new Element("complextype", XScuflNS);
-		if (existingsTypes.contains(descriptor.getQname().toString())) {
-			result.setAttribute("id", descriptor.getQname().toString());
-			populateElement(result, descriptor);
-			result.removeAttribute("qname");
-		} else {
-			existingsTypes.add(descriptor.getQname().toString());
-			populateElement(result, descriptor);
-			Element elements = new Element("elements", XScuflNS);
-			for (TypeDescriptor desc : descriptor.getElements()) {
-				Element element = null;
-				if (desc instanceof ComplexTypeDescriptor) {
-					element = constructElementForComplexType(
-							(ComplexTypeDescriptor) desc, existingsTypes);
-				} else if (desc instanceof ArrayTypeDescriptor) {
-					element = constructElementForArrayType(
-							(ArrayTypeDescriptor) desc, existingsTypes);
-				} else if (desc instanceof BaseTypeDescriptor) {
-					element = new Element("basetype", XScuflNS);
-					populateElement(element, desc);
-				}
-				if (element != null)
-					elements.addContent(element);
-			}
-			result.addContent(elements);
-			List<TypeDescriptor> attributeDescriptors = descriptor.getAttributes();
-			if (attributeDescriptors != null && attributeDescriptors.size() > 0) {
-				Element attributes = new Element("attributes", XScuflNS);
-				for (TypeDescriptor desc : attributeDescriptors) {
-					Element attribute = new Element("attribute", XScuflNS);
-					populateElement(attribute, desc);
-					attributes.addContent(attribute);
-				}
-				result.addContent(attributes);
-			}
-		}
-		return result;
-	}
-
-	private static void populateElement(Element element,
-			TypeDescriptor descriptor) {
-		element.setAttribute("optional", String
-				.valueOf(descriptor.isOptional()));
-		element.setAttribute("unbounded", String.valueOf(descriptor
-				.isUnbounded()));
-		if (descriptor instanceof ArrayTypeDescriptor) {
-			element.setAttribute("wrapped", String
-					.valueOf(((ArrayTypeDescriptor) descriptor).isWrapped()));
-		}
-		element.setAttribute("typename", descriptor.getType());
-		element.setAttribute("name", descriptor.getName() == null ? ""
-				: descriptor.getName());
-		element.setAttribute("qname", descriptor.getQname().toString());
-		if (descriptor.getDocumentation() != null){
-           Element annotationElement =
-                   new Element("annotation", Namespace.getNamespace("xsd", "http://www.w3.org/2001/XMLSchema"));
-           Element documentationElemenet =
-                    new Element("documentation", Namespace.getNamespace("xsd", "http://www.w3.org/2001/XMLSchema"));
-            documentationElemenet.setText(descriptor.getDocumentation());
-            annotationElement.addContent(documentationElemenet);
-            element.addContent(annotationElement);
-		}
-
-	}
-
-	private static TypeDescriptor buildTypeDescriptorFromElement(
-			Element element, HashMap<String, TypeDescriptor> existingsTypes) {
-		TypeDescriptor result = null;
-		if (element.getAttributeValue("id") != null) {
-			TypeDescriptor stored = existingsTypes.get(element
-					.getAttributeValue("id"));
-			if (stored == null)
-				logger.fatal("Missing reference to parent type with id="
-						+ element.getAttributeValue("id"));
-			else {
-				result = createFromCache(stored, element);
-			}
-		}
-
-		if (result == null) {
-			if (element.getName().equalsIgnoreCase("complextype")) {
-				result = new ComplexTypeDescriptor();
-				populateDescriptor(element, result);
-				existingsTypes.put(result.getQname().toString(), result);
-				Element elements = element.getChild("elements", XScuflNS);
-				for (Iterator<?> iterator = elements.getChildren().iterator(); iterator
-						.hasNext();) {
-					Element childElement = (Element) iterator.next();
-					((ComplexTypeDescriptor) result).getElements().add(
-							buildTypeDescriptorFromElement(childElement,
-									existingsTypes));
-				}
-				Element attributes = element.getChild("attributes", XScuflNS);
-				if (attributes != null) {
-					for (Iterator<?> iterator = attributes.getChildren().iterator(); iterator
-					.hasNext();) {
-						Element childElement = (Element) iterator.next();
-						((ComplexTypeDescriptor) result).getAttributes().add(
-								buildTypeDescriptorFromElement(childElement,
-										existingsTypes));
-					}
-				}
-
-			} else if (element.getName().equalsIgnoreCase("arraytype")) {
-
-				result = new ArrayTypeDescriptor();
-				populateDescriptor(element, result);
-				existingsTypes.put(result.getQname().toString(), result);
-				Element elementType = element.getChild("elementtype", XScuflNS);
-				((ArrayTypeDescriptor) result)
-						.setElementType(buildTypeDescriptorFromElement(
-								(Element) elementType.getChildren().get(0),
-								existingsTypes));
-				if (element.getAttribute("wrapped") != null) {
-					((ArrayTypeDescriptor) result).setWrapped(element
-							.getAttributeValue("wrapped").equalsIgnoreCase(
-									"true"));
-				} else {
-					// prior to the addition of the wrapped attribute, in the
-					// majority of cases an array
-					// would not be wrapped if it was flagged as unbounded.
-					((ArrayTypeDescriptor) result).setWrapped(!result
-							.isUnbounded());
-				}
-
-			} else if (element.getName().equalsIgnoreCase("basetype")) {
-				result = new BaseTypeDescriptor();
-				populateDescriptor(element, result);
-			} else if (element.getName().equalsIgnoreCase("attribute")) {
-				result = new AttributeTypeDescriptor();
-				populateDescriptor(element, result);
-			} else if (element.getName().equalsIgnoreCase("attribute")) {
-				result = new AttributeTypeDescriptor();
-				populateDescriptor(element, result);
-			}
-		}
-
-		return result;
-	}
-
-	/**
-	 * Performs a shallow copy of the descriptor stored, but updates its name,
-	 * isbounded and optional This means that descriptors of the same type do
-	 * not need to be repeated throught the stored XML but also takes into
-	 * account parameters of the same type may have different name and
-	 * attributes to that stored
-	 * 
-	 * @param descriptor
-	 * @param element
-	 * @return
-	 */
-	private static TypeDescriptor createFromCache(TypeDescriptor descriptor,
-			Element element) {
-		TypeDescriptor result = null;
-		if (descriptor instanceof ArrayTypeDescriptor) {
-			ArrayTypeDescriptor array = new ArrayTypeDescriptor();
-			array.setQname(descriptor.getQname());
-			array.setElementType(((ArrayTypeDescriptor) descriptor)
-					.getElementType());
-			array.setWrapped(((ArrayTypeDescriptor) descriptor).isWrapped());
-			result = array;
-		} else if (descriptor instanceof ComplexTypeDescriptor) {
-			ComplexTypeDescriptor complex = new ComplexTypeDescriptor();
-			complex.setQname(descriptor.getQname());
-			complex.setElements(((ComplexTypeDescriptor) descriptor)
-					.getElements());
-			result = complex;
-		} else {
-			throw new IllegalArgumentException("Unexpected type descriptor: "
-					+ descriptor);
-		}
-		result.setType(descriptor.getType());
-
-		String name = element.getAttributeValue("name");
-		result.setName(name != null ? name : descriptor.getName());
-
-		String optional = element.getAttributeValue("optional");
-		if (optional != null) {
-			result.setOptional(optional.equalsIgnoreCase("true"));
-		} else {
-			result.setOptional(descriptor.isOptional());
-		}
-
-		String unbounded = element.getAttributeValue("unbounded");
-		if (unbounded != null) {
-			result.setUnbounded(unbounded.equalsIgnoreCase("true"));
-		} else {
-			result.setUnbounded(descriptor.isUnbounded());
-		}
-
-		return result;
-	}
-
-	private static void populateDescriptor(Element element,
-			TypeDescriptor result) {
-		result.setName(element.getAttributeValue("name"));
-		result.setType(element.getAttributeValue("typename"));
-		result.setOptional(element.getAttributeValue("optional")
-				.equalsIgnoreCase("true"));
-		result.setUnbounded(element.getAttributeValue("unbounded")
-				.equalsIgnoreCase("true"));
-
-		Element annotationChild =
-               element.getChild("annotation", Namespace.getNamespace("xsd", "http://www.w3.org/2001/XMLSchema"));
-        if (annotationChild != null){
-           List documentationChildren = annotationChild
-                    .getChildren("documentation", Namespace.getNamespace("xsd", "http://www.w3.org/2001/XMLSchema"));
-			 
-           String documentation = "";
-            for (Object documentationChild : documentationChildren) {
-                documentation += ((Element)documentationChild).getText();
-            }
-            if (!documentation.isEmpty()){
-               result.setDocumentation(documentation);
-            }
-        }
-
-		// qname has been added since 1.3.2-RC1 so need to test if missing for
-		// older workflows
-		// if missing it is resolved to an empty namespace and typename:
-		// {}typename
-		String qname = element.getAttributeValue("qname");
-		if (qname != null)
-			result.setQnameFromString(qname);
-	}
-
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/TypeDescriptorTest.java
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diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/TypeDescriptorTest.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/TypeDescriptorTest.java
deleted file mode 100644
index c7be469..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/TypeDescriptorTest.java
+++ /dev/null
@@ -1,240 +0,0 @@
-/*
- * Copyright (C) 2003 The University of Manchester 
- *
- * Modifications to the initial code base are copyright of their
- * respective authors, or their employers as appropriate.  Authorship
- * of the modifications may be determined from the ChangeLog placed at
- * the end of this file.
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation; either version 2.1 of
- * the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public
- * License along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA.
- *
- ****************************************************************
- * Source code information
- * -----------------------
- * Filename           $RCSfile: TypeDescriptorTest.java,v $
- * Revision           $Revision: 1.2 $
- * Release status     $State: Exp $
- * Last modified on   $Date: 2007/11/30 12:13:38 $
- *               by   $Author: sowen70 $
- * Created on 17-May-2006
- *****************************************************************/
-package net.sf.taverna.wsdl.parser;
-
-import java.util.ArrayList;
-import java.util.List;
-
-import junit.framework.TestCase;
-
-public class TypeDescriptorTest extends TestCase {
-
-	// array of strings
-	public void testRetrieveSignitureForArrayDescriptor() {
-		ArrayTypeDescriptor desc = new ArrayTypeDescriptor();
-		desc.setName("AnArray");
-		desc.setType("arrayofstring");
-
-		BaseTypeDescriptor base = new BaseTypeDescriptor();
-		base.setName("");
-		base.setType("string");
-
-		desc.setElementType(base);
-
-		String[] names = new String[1];
-		Class<?>[] types = new Class[1];
-
-		List<TypeDescriptor> params = new ArrayList<TypeDescriptor>();
-		params.add(desc);
-		TypeDescriptor.retrieveSignature(params, names, types);
-
-		assertEquals("AnArray", names[0]);
-		assertEquals(String[].class, types[0]);
-	}
-
-	// array of strings, but type for array is defined as string
-	// (which is logically warped, but some wsdl's describe their string arrays
-	// this way).
-	public void testRetrieveSignitureForArrayDescriptor3() {
-		ArrayTypeDescriptor desc = new ArrayTypeDescriptor();
-		desc.setName("AnArray");
-		desc.setType("string");
-
-		BaseTypeDescriptor base = new BaseTypeDescriptor();
-		base.setName("");
-		base.setType("string");
-
-		desc.setElementType(base);
-
-		String[] names = new String[1];
-		Class<?>[] types = new Class[1];
-
-		List<TypeDescriptor> params = new ArrayList<TypeDescriptor>();
-		params.add(desc);
-		TypeDescriptor.retrieveSignature(params, names, types);
-
-		assertEquals("AnArray", names[0]);
-		assertEquals(String[].class, types[0]);
-	}
-
-	// array of complex types
-	public void testRetrieveSignitureForArrayDescriptor2() {
-		ArrayTypeDescriptor desc = new ArrayTypeDescriptor();
-		desc.setName("AnArray");
-		desc.setType("complextype");
-
-		ComplexTypeDescriptor complex = new ComplexTypeDescriptor();
-		complex.setName("complex");
-		complex.setType("complextype");
-
-		desc.setElementType(complex);
-
-		String[] names = new String[1];
-		Class<?>[] types = new Class[1];
-
-		List<TypeDescriptor> params = new ArrayList<TypeDescriptor>();
-		params.add(desc);
-		TypeDescriptor.retrieveSignature(params, names, types);
-
-		assertEquals("AnArray", names[0]);
-		assertEquals(org.w3c.dom.Element.class, types[0]);
-	}
-
-	public void testForCyclicTrue() {
-		ComplexTypeDescriptor a = new ComplexTypeDescriptor();
-		a.setName("a");
-		a.setType("outertype");
-
-		ComplexTypeDescriptor b = new ComplexTypeDescriptor();
-		b.setName("b");
-		b.setType("middletype");
-
-		ComplexTypeDescriptor c = new ComplexTypeDescriptor();
-		c.setName("c");
-		c.setType("innertype");
-
-		a.getElements().add(b);
-		b.getElements().add(c);
-		c.getElements().add(a);
-
-		assertTrue("should be identified as cyclic", TypeDescriptor.isCyclic(a));
-	}
-
-	public void testForCyclicTrueWithArray() {
-		ComplexTypeDescriptor a = new ComplexTypeDescriptor();
-		a.setName("a");
-		a.setType("outertype");
-
-		ArrayTypeDescriptor b = new ArrayTypeDescriptor();
-		b.setName("b");
-		b.setType("arraytype");
-
-		ComplexTypeDescriptor c = new ComplexTypeDescriptor();
-		c.setName("c");
-		c.setType("innertype");
-
-		a.getElements().add(b);
-		b.setElementType(c);
-		c.getElements().add(a);
-
-		assertTrue("should be identified as cyclic", TypeDescriptor.isCyclic(a));
-	}
-
-	public void testForCyclicFalse() {
-		ComplexTypeDescriptor a = new ComplexTypeDescriptor();
-		a.setName("a");
-		a.setType("person");
-
-		ComplexTypeDescriptor b = new ComplexTypeDescriptor();
-		b.setName("b");
-		b.setType("name");
-
-		ComplexTypeDescriptor c = new ComplexTypeDescriptor();
-		c.setName("c");
-		c.setType("age");
-
-		a.getElements().add(b);
-		a.getElements().add(c);
-
-		assertFalse("should be not identified as cyclic", TypeDescriptor
-				.isCyclic(a));
-	}
-
-	public void testQNameAsString() {
-		ComplexTypeDescriptor a = new ComplexTypeDescriptor();
-		a.setQnameFromString("{URI}localPart");
-		assertEquals("URI", a.getQname().getNamespaceURI());
-		assertEquals("localPart", a.getQname().getLocalPart());
-
-		a = new ComplexTypeDescriptor();
-		a.setQnameFromString("{}localPart");
-		assertEquals("", a.getQname().getNamespaceURI());
-		assertEquals("localPart", a.getQname().getLocalPart());
-	}
-	
-	public void testBaseTypeKnownSigniture() {
-		TypeDescriptor decimal=new BaseTypeDescriptor();
-		decimal.setName("adecimal");
-		decimal.setType("decimal");
-		
-		List<TypeDescriptor> params=new ArrayList<TypeDescriptor>();
-		String [] names=new String[1];
-		Class<?> [] types=new Class[1];
-		params.add(decimal);
-		TypeDescriptor.retrieveSignature(params, names, types);
-		
-		assertEquals("should only be 1 type",1,types.length);
-		assertEquals("should only be 1 name",1,names.length);
-		
-		assertEquals("name should be adecimal","adecimal",names[0]);
-		assertEquals("type should be double",Double.TYPE,types[0]);
-	}
-	
-	public void testBaseTypeUnrecognisedSigniture() {
-		TypeDescriptor date=new BaseTypeDescriptor();
-		date.setName("adate");
-		date.setType("date");
-		
-		List<TypeDescriptor> params=new ArrayList<TypeDescriptor>();
-		String [] names=new String[1];
-		Class<?> [] types=new Class[1];
-		params.add(date);
-		TypeDescriptor.retrieveSignature(params, names, types);
-		
-		assertEquals("should only be 1 type",1,types.length);
-		assertEquals("should only be 1 name",1,names.length);
-		
-		assertEquals("name should be adecimal","adate",names[0]);
-		assertEquals("type should be string",String.class,types[0]);
-	}
-	
-	public void testComplex() {
-		TypeDescriptor complex=new ComplexTypeDescriptor();
-		complex.setName("acomplex");
-		complex.setType("complextype");
-		
-		List<TypeDescriptor> params=new ArrayList<TypeDescriptor>();
-		String [] names=new String[1];
-		Class<?> [] types=new Class[1];
-		params.add(complex);
-		TypeDescriptor.retrieveSignature(params, names, types);
-		
-		assertEquals("should only be 1 type",1,types.length);
-		assertEquals("should only be 1 name",1,names.length);
-		
-		assertEquals("name should be adecimal","acomplex",names[0]);
-		assertEquals("type should be string",org.w3c.dom.Element.class,types[0]);
-	}
-
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSDLParserTest.java
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diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSDLParserTest.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSDLParserTest.java
deleted file mode 100644
index f111619..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSDLParserTest.java
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@@ -1,295 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.wsdl.parser;
-
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertFalse;
-import static org.junit.Assert.assertTrue;
-
-import java.net.URL;
-import java.util.List;
-
-import javax.wsdl.Operation;
-import javax.xml.namespace.QName;
-
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.junit.Test;
-
-public class WSDLParserTest {
-	
-	@Test
-	public void testGetOperations() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-		List<Operation> operations = parser.getOperations();
-		assertEquals(
-				"wrong number of operations found (wsdl may have changed)", 12,
-				operations.size());
-		Operation op = operations.get(0);
-		assertEquals("wrong name for first operation", "run_eGquery", op
-				.getName());
-		assertEquals("wrong style", "document", parser.getStyle());
-	}
-
-	private String wsdlResourcePath(String wsdlName) throws Exception {
-		return WSDLTestHelper.wsdlResourcePath(wsdlName);
-	}
-
-	@Test
-	public void testGetActionURI() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-		String actionURI = parser.getSOAPActionURI("run_eInfo");
-		assertEquals("action uri is wrong", "einfo", actionURI);
-	}
-
-	@Test
-	public void testComplexTypeFromImport() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-
-		List<TypeDescriptor> inputs = parser
-				.getOperationInputParameters("run_eInfo");
-		List<TypeDescriptor> outputs = parser
-				.getOperationOutputParameters("run_eInfo");
-		assertEquals("wrong number of inputs", 1, inputs.size());
-		assertEquals("wrong number of outputs", 1, outputs.size());
-		assertTrue("input should be complex",
-				inputs.get(0) instanceof ComplexTypeDescriptor);
-		ComplexTypeDescriptor complexTypeDesc = (ComplexTypeDescriptor) inputs
-				.get(0);
-		assertEquals("wrong name", "parameters", complexTypeDesc.getName());
-		assertEquals("wrong number of elements", 3, complexTypeDesc
-				.getElements().size());
-
-		TypeDescriptor typeDesc = complexTypeDesc
-				.getElements().get(0);
-
-		assertEquals("wrong name", "db", typeDesc.getName());
-		assertEquals("wrong type", "string", typeDesc.getType());
-		assertTrue("db should be optional", typeDesc.isOptional());
-		assertFalse("db should not be unbounded", typeDesc.isUnbounded());
-
-		typeDesc = complexTypeDesc.getElements().get(1);
-		assertEquals("wrong name", "tool", typeDesc.getName());
-		assertEquals("wrong type", "string", typeDesc.getType());
-		assertTrue("tool should be optional", typeDesc.isOptional());
-		assertFalse("tool should not be unbounded", typeDesc.isUnbounded());
-
-		typeDesc = complexTypeDesc.getElements().get(2);
-		assertEquals("wrong name", "email", typeDesc.getName());
-		assertEquals("wrong type", "string", typeDesc.getType());
-		assertTrue("email should be optional", typeDesc.isOptional());
-		assertFalse("email should not be unbounded", typeDesc.isUnbounded());
-	}
-
-	@Test
-	public void testNestedComplexTypes() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("bind.wsdl"));
-
-		List<TypeDescriptor> inputs = parser
-				.getOperationInputParameters("BIVGetComplexRecord");
-		List<TypeDescriptor> outputs = parser
-				.getOperationOutputParameters("BIVGetComplexRecord");
-
-		assertEquals("wrong number of inputs", 1, inputs.size());
-		assertEquals("wrong number of outputs", 1, outputs.size());
-
-		assertEquals("wrong name for input", "bid", (inputs
-				.get(0)).getName());
-		assertEquals("wrong type for input", "int", (inputs
-				.get(0)).getType());
-
-		assertEquals("wrong name for output", "BIVComplex",
-				(outputs.get(0)).getName());
-		assertEquals("wrong type for output", "BIVComplex",
-				(outputs.get(0)).getType());
-		assertTrue("wrong descriptor class for output",
-				outputs.get(0) instanceof ComplexTypeDescriptor);
-
-		ComplexTypeDescriptor typeDesc = (ComplexTypeDescriptor) outputs.get(0);
-		assertEquals("wrong number of inner elements", 3, typeDesc
-				.getElements().size());
-		assertEquals("wrong name for first element", "bid",
-				(typeDesc.getElements().get(0)).getName());
-		assertEquals("wrong name for 2nd element", "spokeModel",
-				(typeDesc.getElements().get(1)).getName());
-		assertEquals("wrong name for 3rd element", "subunit",
-				(typeDesc.getElements().get(2)).getName());
-
-		assertTrue("3rd element should be instance of ArrayTypeDescriptor",
-				typeDesc.getElements().get(2) instanceof ArrayTypeDescriptor);
-		ArrayTypeDescriptor arrayTypeDesc = (ArrayTypeDescriptor) typeDesc
-				.getElements().get(2);
-
-		assertEquals("wrong type for 3rd element", "BIVMolecule", arrayTypeDesc
-				.getType());
-
-		typeDesc = (ComplexTypeDescriptor) arrayTypeDesc.getElementType();
-
-		assertEquals("wrong type for 3rd element", "BIVMolecule", typeDesc
-				.getType());
-
-		assertEquals("wrong number of elements in nested complex type", 7,
-				typeDesc.getElements().size());
-		assertEquals("wrong name for first element", "id",
-				(typeDesc.getElements().get(0)).getName());
-		assertEquals("wrong type for first element", "int",
-				(typeDesc.getElements().get(0)).getType());
-
-		assertEquals("wrong name for last element", "smid-hits",
-				(typeDesc.getElements().get(6)).getName());
-		assertEquals("wrong type for last element", "int",
-				(typeDesc.getElements().get(6)).getType());
-	}
-	
-	@Test
-	public void testMissingStyleInBinding() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("SBWReader.wsdl"));
-		assertEquals("Style should default to document if missing", "document",
-				parser.getStyle());
-	}
-
-	@Test
-	public void testBaseTypes() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("bind.wsdl"));
-
-		List<TypeDescriptor> inputs = parser
-				.getOperationInputParameters("BIVGetRecord");
-		assertEquals("wrong number of inputs", 1, inputs.size());
-		assertTrue("should not be base type",
-				inputs.get(0) instanceof BaseTypeDescriptor);
-		assertEquals("wrong name", "bid", (inputs.get(0))
-				.getName());
-		assertEquals("wrong type", "int", (inputs.get(0))
-				.getType());
-	}
-
-	@Test
-	public void testArrayType() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("bind.wsdl"));
-
-		List<TypeDescriptor> inputs = parser
-				.getOperationInputParameters("BIVGetRecords");
-		List<TypeDescriptor> outputs = parser
-				.getOperationOutputParameters("BIVGetRecords");
-		assertEquals("wrong number of inputs", 1, inputs.size());
-		assertTrue("input should be of AArrayTypeDescriptor",
-				inputs.get(0) instanceof ArrayTypeDescriptor);
-
-		ArrayTypeDescriptor arrayTypeDesc = (ArrayTypeDescriptor) inputs.get(0);
-
-		assertEquals("wrong name", "ids", arrayTypeDesc.getName());
-		assertEquals("wrong type", "ArrayOf_xsd_int", arrayTypeDesc.getType());
-
-		TypeDescriptor typeDesc = arrayTypeDesc.getElementType();
-
-		assertTrue("element should be of type BaseTypeDescriptor",
-				typeDesc instanceof BaseTypeDescriptor);
-		assertEquals("wrong type", "int", typeDesc.getType());
-
-		assertEquals("wrong number of outputs", 1, outputs.size());
-
-		assertTrue("output should be of ArrayTypeDescriptor",
-				outputs.get(0) instanceof ArrayTypeDescriptor);
-
-		arrayTypeDesc = (ArrayTypeDescriptor) outputs.get(0);
-		assertEquals("wrong name", "BIVRecords", arrayTypeDesc.getName());
-		assertEquals("wrong type", "ArrayOfBIVRecord", arrayTypeDesc.getType());
-
-		typeDesc = arrayTypeDesc.getElementType();
-
-		assertEquals("wrong type", "BIVRecord", typeDesc.getType());
-	}
-
-	@Test
-	public void testGoVizNoOutputs() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("GoViz.wsdl"));
-
-		List<TypeDescriptor> inputs = parser
-				.getOperationInputParameters("destroySession");
-		List<TypeDescriptor> outputs = parser
-				.getOperationOutputParameters("destroySession");
-
-		assertEquals("wrong number of inputs", 1, inputs.size());
-		assertEquals("wrong number of outputs", 0, outputs.size());
-
-		TypeDescriptor typeDesc = inputs.get(0);
-		assertTrue("input should be BaseType",
-				typeDesc instanceof BaseTypeDescriptor);
-		assertEquals("wrong name", "sessionID", typeDesc.getName());
-		assertEquals("wrong type", "string", typeDesc.getType());
-	}
-
-	@Test
-	public void testGetUseEncoded() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("bind.wsdl"));
-		String use = parser.getUse("BIVGetRecords");
-		assertEquals("use should be encoded", "encoded", use);
-	}
-
-	@Test
-	public void testGetUseLiteral() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-		String use = parser.getUse("run_eInfo");
-		assertEquals("use should be literal", "literal", use);
-	}
-
-	@Test
-	public void testGetOperationNamespace() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("CurrencyExchangeService.wsdl"));
-		String operationNamespace = parser.getOperationNamespaceURI("getRate");
-		assertEquals("operation namespace is wrong",
-				"urn:xmethods-CurrencyExchange", operationNamespace);
-	}
-	
-	@Test
-	public void testGetOperationNamespace2() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-		String operationNamespace = parser
-				.getOperationNamespaceURI("run_eInfo");
-		assertEquals("operation namespace is wrong",
-				"http://www.ncbi.nlm.nih.gov/soap/eutils/einfo",
-				operationNamespace);
-	}
-
-	@Test
-	public void testGetOperationElementQName() throws Exception {
-		WSDLParser parser = new WSDLParser(wsdlResourcePath("eutils/eutils_lite.wsdl"));
-		QName operationQName = parser.getOperationQname("run_eInfo");
-		assertEquals("element name is wrong", "eInfoRequest", operationQName
-				.getLocalPart());
-		assertEquals("operation namespace is wrong",
-				"http://www.ncbi.nlm.nih.gov/soap/eutils/einfo", operationQName
-						.getNamespaceURI());
-	}
-
-	@Test
-	public void testGetOperationElementQName2() throws Exception {
-		URL tav744Url = getClass().getResource(
-				"/net/sf/taverna/wsdl/parser/TAV-744/InstrumentService__.wsdl");
-		WSDLParser parser = new WSDLParser(tav744Url.toExternalForm());
-		QName operationQName = parser.getOperationQname("getList");
-		assertEquals("operation element name is wrong", "GetListRequest",
-				operationQName.getLocalPart());
-		assertEquals("operation namespace is wrong",
-				"http://InstrumentService.uniparthenope.it/InstrumentService",
-				operationQName.getNamespaceURI());
-	}
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSRFParserTest.java
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSRFParserTest.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSRFParserTest.java
deleted file mode 100644
index 8c6cede..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/parser/WSRFParserTest.java
+++ /dev/null
@@ -1,57 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.wsdl.parser;
-
-import static org.junit.Assert.assertNotNull;
-import static org.junit.Assert.assertTrue;
-
-import java.net.URL;
-
-import org.junit.Before;
-import org.junit.Test;
-
-/**
- * Check that WSDLParser can detect WSRF.
- * Tests {@link WSDLParser#checkWSRF()}
- * 
- * @author Stian Soiland-Reyes
- *
- */
-public class WSRFParserTest {
-	
-	private URL counterServiceWSDL;
-	private WSDLParser wsdlParser;
-
-	@Before
-	public void findWSDL() {
-		String path = "wsrf/counterService/CounterService_.wsdl";
-		counterServiceWSDL = getClass().getResource(path);	
-		assertNotNull("Coult not find test WSDL " + path, counterServiceWSDL);
-	}
-	
-	@Test
-	public void isWSRF() throws Exception {
-		wsdlParser = new WSDLParser(counterServiceWSDL.toExternalForm());
-		assertTrue("Not recognized as WSRF service", wsdlParser.isWsrfService());
-	}
-
-	
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/EncodedBodyBuilderTest.java
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/EncodedBodyBuilderTest.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/EncodedBodyBuilderTest.java
deleted file mode 100644
index 141305b..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/EncodedBodyBuilderTest.java
+++ /dev/null
@@ -1,108 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertFalse;
-import static org.junit.Assert.assertTrue;
-
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.apache.axis.message.SOAPBodyElement;
-import org.junit.Test;
-
-
-public class EncodedBodyBuilderTest implements LocationConstants {
-	
-	private String wsdlResourcePath(String wsdlName) throws Exception {
-		return WSDLTestHelper.wsdlResourcePath(wsdlName);
-	}
-
-	@Test
-	public void testSimpleCase() throws Exception {
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		
-		BodyBuilder builder = createBuilder(wsdlResourcePath("TestServices-rpcencoded.wsdl"), "countString");
-		
-		assertTrue("Wrong type of builder created",builder instanceof EncodedBodyBuilder);
-		
-		inputMap.put("str", "Roger Ramjet");
-		SOAPBodyElement body = builder.build(inputMap);
-		
-		String xml = body.getAsString();
-		
-		assertTrue("Contents of body are not as expected: actual body:"+xml,xml.contains("<str xsi:type=\"xsd:string\">Roger Ramjet</str>"));
-	}
-	
-	@Test
-	public void testStringArray() throws Exception {
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		
-		BodyBuilder builder = createBuilder(wsdlResourcePath("TestServices-rpcencoded.wsdl"), "countStringArray");
-		
-		assertTrue("Wrong type of builder created",builder instanceof EncodedBodyBuilder);
-		List<String> array=new ArrayList<String>();
-		array.add("one");
-		array.add("two");
-		array.add("three");
-		inputMap.put("array", array);
-		SOAPBodyElement body = builder.build(inputMap);
-		
-		String xml = body.getAsString();
-		
-		assertTrue("Contents of body are not as expected: actual body:"+xml,xml.contains("<string>one</string><string>two</string><string>three</string>"));
-	}
-	
-	@Test
-	public void testComplexType() throws Exception {
-		BodyBuilder builder = createBuilder(wsdlResourcePath("TestServices-rpcencoded.wsdl"), "personToString");
-		
-		assertTrue("Wrong type of builder created",builder instanceof EncodedBodyBuilder);
-		
-		String p = "<Person xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xmlns:xsd=\"http://www.w3.org/2001/XMLSchema\"><name xsi:type=\"xsd:string\">bob</name><age xsi:type=\"xsd:int\">12</age></Person>";
-		
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		
-		inputMap.put("p",p);
-		SOAPBodyElement body = builder.build(inputMap);
-		
-		String xml = body.getAsString();
-		
-		System.out.println(xml);
-		
-		assertTrue("Type definition of Person is missing",xml.contains("<p xsi:type=\"ns1:Person\">"));
-		assertFalse("There shouldn't be ns2 declaration",xml.contains("xmlns:ns2"));
-		assertTrue("Missing data content",xml.contains("<name xsi:type=\"xsd:string\">bob</name><age xsi:type=\"xsd:int\">12</age>"));
-		
-	}
-	
-	protected BodyBuilder createBuilder(String wsdl, String operation) throws Exception {
-		WSDLParser parser = new WSDLParser(wsdl);
-		
-		return BodyBuilderFactory.instance().create(parser, operation, parser.getOperationInputParameters(operation));
-	}
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/LiteralBodyBuilderTest.java
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/LiteralBodyBuilderTest.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/LiteralBodyBuilderTest.java
deleted file mode 100644
index 340f885..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/LiteralBodyBuilderTest.java
+++ /dev/null
@@ -1,170 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertTrue;
-
-import java.net.URL;
-import java.util.HashMap;
-import java.util.Map;
-
-import javax.xml.namespace.QName;
-
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.apache.axis.message.SOAPBodyElement;
-import org.junit.Ignore;
-import org.junit.Test;
-import org.w3c.dom.Node;
-
-public class LiteralBodyBuilderTest implements LocationConstants{
-	
-	private String wsdlResourcePath(String wsdlName) throws Exception {
-		return WSDLTestHelper.wsdlResourcePath(wsdlName);
-	}
-
-	@Test
-	public void testUnqualifiedNamespaces() throws Exception {
-		BodyBuilder builder = createBuilder(wsdlResourcePath("whatizit.wsdl"), "queryPmid");
-		
-		assertTrue("Is is the wrong type, it should be LiteralBodyBuilder",builder instanceof LiteralBodyBuilder);
-		
-		String parameters = "<parameters xmlns=\"http://www.ebi.ac.uk/webservices/whatizit/ws\"><pipelineName xmlns=\"\">swissProt</pipelineName><pmid xmlns=\"\">1234</pmid></parameters>";
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		inputMap.put("parameters", parameters);
-		
-		SOAPBodyElement body = builder.build(inputMap);
-		
-		String xml = body.getAsString();
-		
-		assertTrue("Content of body is incorrect in the definition of the pipelineName and pmid:"+xml,xml.contains("<pipelineName xmlns=\"\">swissProt</pipelineName><pmid xmlns=\"\">1234</pmid>"));
-		assertTrue("Wrapping element should have its namespace declared",xml.contains("<ns1:queryPmid"));
-	}
-	
-	@Test
-	public void testQualifiedUnwrapped() throws Exception {
-		BodyBuilder builder = createBuilder(wsdlResourcePath("TestServices-unwrapped.wsdl"), "countString");
-		
-		assertTrue("Is is the wrong type, it should be LiteralBodyBuilder",builder instanceof LiteralBodyBuilder);
-		Map<String,Object>inputMap = new HashMap<String, Object>();
-		inputMap.put("str", "bob");
-		
-		String xml = builder.build(inputMap).getAsString();
-		
-		assertEquals("XML should containe qualifed namespace for str",xml,"<ns1:str xmlns:ns1=\"http://testing.org\">bob</ns1:str>");
-	}
-	
-	@Test
-	public void testUnwrappedSimple() throws Exception {
-		BodyBuilder builder = createBuilder(wsdlResourcePath("TestServices-unwrapped.wsdl"), "countString");
-		
-		assertTrue("Wrong type of builder, it should be Literal based",builder instanceof LiteralBodyBuilder);
-		
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		inputMap.put("str", "12345");
-		
-		SOAPBodyElement body = builder.build(inputMap);
-		
-		assertEquals("Input element should be named str:","str",body.getNodeName());
-		assertEquals("Value should be 12345:","12345",body.getFirstChild().getNextSibling().getNodeValue());
-	}
-	
-	@Test
-	public void testUnwrappedArray() throws Exception {
-		BodyBuilder builder = createBuilder(wsdlResourcePath("TestServices-unwrapped.wsdl"), "countStringArray");
-		
-		assertTrue("Wrong type of builder, it should be Literal based",builder instanceof LiteralBodyBuilder);
-		
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		inputMap.put("array", "<array><item>1</item><item>2</item><item>3</item></array>");
-		
-		SOAPBodyElement body = builder.build(inputMap);
-		
-		String xml = body.getAsString();
-		assertEquals("Outer element should be named array. xml = "+xml,"array",body.getNodeName());
-		
-		Node itemElement = body.getFirstChild().getNextSibling();
-		assertEquals("Array element should be named item. xml = "+xml,"item",itemElement.getNodeName());
-		assertEquals("First Array element should have the value '1'. xml = "+xml,"1",itemElement.getFirstChild().getNodeValue());
-	}
-	
-	@Test 
-	public void testOperationElementNameEUtils() throws Exception {
-		BodyBuilder builder = createBuilder(wsdlResourcePath("eutils/eutils_lite.wsdl"), "run_eInfo");
-
-		assertTrue("Wrong type of builder, it should be Literal based",builder instanceof LiteralBodyBuilder);
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		inputMap.put("parameters",
-		// Note: Don't use xmlns="" as it would also affect <parameters>
-				// - which should not affect the namespace of the soap body
-				// element. The element qname of the SOAPBodyElement should be
-				// determined by the schema only
-				"<parameters xmlns:e='http://www.ncbi.nlm.nih.gov/soap/eutils/einfo'>"
-						+ "<e:db>database</e:db>" + "<e:tool>myTool</e:tool>"
-						+ "<e:email>nobody@nowhere.net</e:email>"
-						+ "</parameters>");
-		SOAPBodyElement body = builder.build(inputMap);
-		assertEquals("QName of SOAP body's element did not match expected qname ", 
-				new QName("http://www.ncbi.nlm.nih.gov/soap/eutils/einfo", "eInfoRequest"), 
-				body.getQName());
-	}
-	
-	@Test 
-	public void testOperationElementNameTAV744() throws Exception {
-		URL tav744Url = getClass().getResource(
-				"/net/sf/taverna/wsdl/parser/TAV-744/InstrumentService__.wsdl");
-		
-		BodyBuilder builder = createBuilder(tav744Url.toExternalForm(), "getList");
-
-		assertTrue("Wrong type of builder, it should be Literal based",builder instanceof LiteralBodyBuilder);
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		// No inputs
-		SOAPBodyElement body = builder.build(inputMap);
-		assertEquals("QName of SOAP body's element did not match expected qname ", 
-				new QName("http://InstrumentService.uniparthenope.it/InstrumentService", "GetListRequest"), 
-				body.getQName());
-	}
-	
-	@Test
-	public void testRPCLiteral() throws Exception {
-		BodyBuilder builder = createBuilder(wsdlResourcePath("MyService-rpc-literal.wsdl"), "countString");
-		
-		assertTrue("Wrong type of builder, it should be Literal based",builder instanceof LiteralBodyBuilder);
-		
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		inputMap.put("str", "abcdef");
-		
-		SOAPBodyElement body = builder.build(inputMap);
-		
-		assertEquals("Outer element should be named countString","countString",body.getNodeName());
-		Node strNode = body.getFirstChild();
-		assertEquals("Inner element should be called 'str'","str",strNode.getNodeName());
-		assertEquals("str content should be abcdef","abcdef",strNode.getFirstChild().getNextSibling().getNodeValue());
-	}
-	
-	protected BodyBuilder createBuilder(String wsdl, String operation) throws Exception {
-		WSDLParser parser = new WSDLParser(wsdl);
-		return BodyBuilderFactory.instance().create(parser, operation, parser.getOperationInputParameters(operation));
-	}
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseEncodedTest.java
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseEncodedTest.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseEncodedTest.java
deleted file mode 100644
index ab5e7a2..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseEncodedTest.java
+++ /dev/null
@@ -1,97 +0,0 @@
-/*
- * Copyright (C) 2003 The University of Manchester 
- *
- * Modifications to the initial code base are copyright of their
- * respective authors, or their employers as appropriate.  Authorship
- * of the modifications may be determined from the ChangeLog placed at
- * the end of this file.
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation; either version 2.1 of
- * the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public
- * License along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA.
- *
- ****************************************************************
- * Source code information
- * -----------------------
- * Filename           $RCSfile: SOAPResponseEncodedTest.java,v $
- * Revision           $Revision: 1.4 $
- * Release status     $State: Exp $
- * Last modified on   $Date: 2008/08/29 16:15:54 $
- *               by   $Author: sowen70 $
- * Created on 08-May-2006
- *****************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertNotNull;
-
-import java.io.ByteArrayInputStream;
-import java.util.ArrayList;
-import java.util.List;
-import java.util.Map;
-
-import javax.xml.parsers.DocumentBuilder;
-import javax.xml.parsers.DocumentBuilderFactory;
-
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.apache.axis.message.SOAPBodyElement;
-import org.junit.Test;
-import org.w3c.dom.Document;
-
-public class SOAPResponseEncodedTest  implements LocationConstants {
-	private String wsdlResourcePath(String wsdlName) throws Exception {
-		return WSDLTestHelper.wsdlResourcePath(wsdlName);
-	}
-	
-	@SuppressWarnings("unchecked")
-	@Test
-	public void testSimpleRPC() throws Exception {
-		
-		WSDLParser wsdlParser = new WSDLParser(wsdlResourcePath("ma.wsdl"));
-
-		String xml1 = "<ns1:whatGeneInStageResponse soapenv:encodingStyle=\"http://schemas.xmlsoap.org/soap/encoding/\" xmlns:ns1=\"urn:hgu.webservice.services\" xmlns:soapenv=\"http://schemas.xmlsoap.org/soap/envelope/\"><whatGeneInStageReturn soapenc:arrayType=\"ns2:GeneExpressedQueryShortDetails[0]\" xsi:type=\"soapenc:Array\" xmlns:ns2=\"http://SubmissionQuery.WSDLGenerated.hgu\" xmlns:soapenc=\"http://schemas.xmlsoap.org/soap/encoding/\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"><agene xsi:type=\"string\">a gene</agene></whatGeneInStageReturn></ns1:whatGeneInStageResponse>";
-
-		List<SOAPBodyElement> response = new ArrayList<SOAPBodyElement>();
-
-		DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-				.newDocumentBuilder();
-		Document doc = builder.parse(new ByteArrayInputStream(xml1.getBytes()));
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		SOAPResponseEncodedParser parser = new SOAPResponseEncodedParser(wsdlParser.getOperationOutputParameters("whatGeneInStage"));
-		parser.setStripAttributes(true);
-
-		Map outputMap = parser.parse(response);
-
-		assertNotNull("no output map returned", outputMap);
-
-		assertEquals("map should contain 1 element", 1, outputMap.size());
-
-		Object result = outputMap.get("whatGeneInStageReturn");
-
-		assertNotNull(
-				"output map should have contained entry for 'whatGeneInStageReturn'",
-				result);
-
-		assertEquals("output data should be a string", String.class, result.getClass());
-
-		assertEquals(
-				"incorrect xml content in output",
-				"<whatGeneInStageReturn><agene>a gene</agene></whatGeneInStageReturn>",
-				result.toString());
-	}
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseLiteralTest.java
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseLiteralTest.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseLiteralTest.java
deleted file mode 100644
index f756371..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseLiteralTest.java
+++ /dev/null
@@ -1,174 +0,0 @@
-/*
- * Copyright (C) 2003 The University of Manchester 
- *
- * Modifications to the initial code base are copyright of their
- * respective authors, or their employers as appropriate.  Authorship
- * of the modifications may be determined from the ChangeLog placed at
- * the end of this file.
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation; either version 2.1 of
- * the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public
- * License along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA.
- *
- ****************************************************************
- * Source code information
- * -----------------------
- * Filename           $RCSfile: SOAPResponseLiteralTest.java,v $
- * Revision           $Revision: 1.2 $
- * Release status     $State: Exp $
- * Last modified on   $Date: 2007/11/30 12:13:37 $
- *               by   $Author: sowen70 $
- * Created on 11-May-2006
- *****************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertNotNull;
-
-import java.io.ByteArrayInputStream;
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.List;
-import java.util.Map;
-
-import javax.xml.parsers.DocumentBuilder;
-import javax.xml.parsers.DocumentBuilderFactory;
-
-import net.sf.taverna.wsdl.parser.BaseTypeDescriptor;
-import net.sf.taverna.wsdl.parser.ComplexTypeDescriptor;
-import net.sf.taverna.wsdl.parser.TypeDescriptor;
-
-import org.apache.axis.message.SOAPBodyElement;
-import org.junit.Test;
-import org.w3c.dom.Document;
-
-public class SOAPResponseLiteralTest{
-
-	@SuppressWarnings("unchecked")
-	@Test
-	public void testLiteralParserResultInTextBlock() throws Exception {
-		List response = new ArrayList();
-		String xml = "<testResponse><out>&lt;data name=&quot;a&quot;&gt;some data&lt;/data&gt;&lt;data name=&quot;b&quot;&gt;some more data&lt;/data&gt;</out></testResponse>";
-		DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-				.newDocumentBuilder();
-		Document doc = builder.parse(new ByteArrayInputStream(xml.getBytes()));
-
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		TypeDescriptor descriptor = new ComplexTypeDescriptor();
-		descriptor.setName("testResponse");
-
-		SOAPResponseLiteralParser parser = new SOAPResponseLiteralParser(
-				Collections.singletonList(descriptor));
-
-		Map outputMap = parser.parse(response);
-
-		assertNotNull("no output map returned", outputMap);
-		assertEquals("map should contain 1 element", 1, outputMap.size());
-
-		Object testResponse = outputMap.get("testResponse");
-
-		assertNotNull("there should be an output named 'testReponse'",
-				testResponse);
-		assertEquals("output data should be a string", String.class,
-				testResponse.getClass());
-
-		assertEquals(
-				"xml is wrong",
-				"<testResponse><out>&lt;data name=&quot;a&quot;&gt;some data&lt;/data&gt;&lt;data name=&quot;b&quot;&gt;some more data&lt;/data&gt;</out></testResponse>",
-				testResponse.toString());
-	}
-
-	@SuppressWarnings("unchecked")
-	@Test
-	public void testLiteralParser() throws Exception {
-		List response = new ArrayList();
-		String xml = "<testResponse><out><data name=\"a\">some data</data><data name=\"b\">some more data</data></out></testResponse>";
-		DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-				.newDocumentBuilder();
-		Document doc = builder.parse(new ByteArrayInputStream(xml.getBytes()));
-
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		TypeDescriptor descriptor = new ComplexTypeDescriptor();
-		descriptor.setName("testResponse");
-
-		SOAPResponseLiteralParser parser = new SOAPResponseLiteralParser(
-				Collections.singletonList(descriptor));
-
-		Map outputMap = parser.parse(response);
-
-		assertNotNull("no output map returned", outputMap);
-		assertEquals("map should contain 1 element", 1, outputMap.size());
-
-		Object testResponse = outputMap.get("testResponse");
-
-		assertNotNull("there should be an output named 'testReponse'",
-				testResponse);
-		assertEquals("output data should be a string", String.class,
-				testResponse.getClass());
-
-		assertEquals(
-				"xml is wrong",
-				"<testResponse><out><data name=\"a\">some data</data><data name=\"b\">some more data</data></out></testResponse>",
-				testResponse.toString());
-	}
-	
-	@SuppressWarnings("unchecked")
-	@Test
-	public void testUnwrappedLiteralResponseParsing() throws Exception {
-		List response = new ArrayList();
-		
-		String xml = "<getStringReturn xmlns=\"http://testing.org\">a string</getStringReturn>";
-		DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-		.newDocumentBuilder();
-		Document doc = builder.parse(new ByteArrayInputStream(xml.getBytes()));
-
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		TypeDescriptor descriptor = new BaseTypeDescriptor();
-		descriptor.setName("getStringReturn");
-		
-		SOAPResponseLiteralParser parser = new SOAPResponsePrimitiveLiteralParser(
-				Collections.singletonList(descriptor));
-
-		Map outputMap = parser.parse(response);
-
-		assertNotNull("no output map returned", outputMap);
-		assertEquals("map should contain 1 element", 1, outputMap.size());
-
-		Object stringReturn = outputMap.get("getStringReturn");
-		
-		assertEquals("value of data returned is wrong","a string",stringReturn.toString());
-	}
-	
-	@SuppressWarnings("unchecked")
-	@Test
-	public void testEmptyResponse() throws Exception {
-		List response = new ArrayList();
-		
-		TypeDescriptor descriptor = new BaseTypeDescriptor();
-		descriptor.setName("getStringReturn");
-		
-		SOAPResponseLiteralParser parser = new SOAPResponseLiteralParser(
-				Collections.singletonList(descriptor));
-
-		Map outputMap = parser.parse(response);
-
-		assertNotNull("no output map returned", outputMap);
-		assertEquals("map should contain 1 element", 0, outputMap.size());
-	}
-
-}
-

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseMultiRefTest.java
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseMultiRefTest.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseMultiRefTest.java
deleted file mode 100644
index 87390c3..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseMultiRefTest.java
+++ /dev/null
@@ -1,246 +0,0 @@
-/*
- * Copyright (C) 2003 The University of Manchester 
- *
- * Modifications to the initial code base are copyright of their
- * respective authors, or their employers as appropriate.  Authorship
- * of the modifications may be determined from the ChangeLog placed at
- * the end of this file.
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU Lesser General Public License
- * as published by the Free Software Foundation; either version 2.1 of
- * the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- * Lesser General Public License for more details.
- * 
- * You should have received a copy of the GNU Lesser General Public
- * License along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- * USA.
- *
- ****************************************************************
- * Source code information
- * -----------------------
- * Filename           $RCSfile: SOAPResponseMultiRefTest.java,v $
- * Revision           $Revision: 1.4 $
- * Release status     $State: Exp $
- * Last modified on   $Date: 2008/08/29 16:15:54 $
- *               by   $Author: sowen70 $
- * Created on 08-May-2006
- *****************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertEquals;
-import static org.junit.Assert.assertNotNull;
-import static org.junit.Assert.fail;
-
-import java.io.ByteArrayInputStream;
-import java.util.ArrayList;
-import java.util.Collections;
-import java.util.List;
-import java.util.Map;
-
-import javax.xml.parsers.DocumentBuilder;
-import javax.xml.parsers.DocumentBuilderFactory;
-
-import net.sf.taverna.wsdl.parser.ComplexTypeDescriptor;
-import net.sf.taverna.wsdl.parser.TypeDescriptor;
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.apache.axis.message.SOAPBodyElement;
-import org.junit.Test;
-import org.w3c.dom.Document;
-
-public class SOAPResponseMultiRefTest  implements LocationConstants {
-	
-	private String wsdlResourcePath(String wsdlName) throws Exception {
-		return WSDLTestHelper.wsdlResourcePath(wsdlName);
-	}
-
-	@SuppressWarnings("unchecked")
-	@Test
-	public void testMultiRef() throws Exception {
-		WSDLParser wsdlParser = new WSDLParser(wsdlResourcePath("TestServices-rpcencoded.wsdl"));
-
-		List response = new ArrayList();
-
-		String xml1 = "<ns1:getPersonResponse soapenv:encodingStyle=\"http://schemas.xmlsoap.org/soap/encoding/\" xmlns:ns1=\"urn:testing\" xmlns:soapenv=\"http://schemas.xmlsoap.org/soap/envelope/\"><getPersonReturn href=\"#id0\"/></ns1:getPersonResponse>";
-		String xml2 = "<multiRef id=\"id0\" soapenc:root=\"0\" soapenv:encodingStyle=\"http://schemas.xmlsoap.org/soap/encoding/\" xmlns:soapenc=\"http://schemas.xmlsoap.org/soap/encoding/\" xmlns:soapenv=\"http://schemas.xmlsoap.org/soap/envelope/\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"><age xsi:type=\"soapenc:string\">5</age><name xsi:type=\"soapenc:string\">bob</name></multiRef>";
-
-		DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-				.newDocumentBuilder();
-		Document doc = builder.parse(new ByteArrayInputStream(xml1.getBytes()));
-
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		doc = builder.parse(new ByteArrayInputStream(xml2.getBytes()));
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		SOAPResponseEncodedMultiRefParser parser = new SOAPResponseEncodedMultiRefParser(
-				wsdlParser.getOperationOutputParameters("getPerson"));
-		parser.setStripAttributes(true);
-		Map outputMap = parser.parse(response);
-
-		assertNotNull("no output map returned", outputMap);
-
-		assertEquals("map should contain 1 element", 1, outputMap.size());
-
-		Object getPersonReturn =  outputMap
-				.get("getPersonReturn");
-
-		assertNotNull(
-				"output map should have contained entry for 'getPersonReturn'",
-				getPersonReturn);
-
-		assertEquals("output data should be a string", String.class,
-				getPersonReturn.getClass());
-
-		assertEquals(
-				"unexpected xml content in output",
-				"<getPersonReturn><age>5</age><name>bob</name></getPersonReturn>",
-				getPersonReturn.toString());
-
-	}
-
-	@SuppressWarnings("unchecked")
-	@Test
-	public void testMultiRefReturnNamespaced() throws Exception {
-		WSDLParser wsdlParser = new WSDLParser(wsdlResourcePath("TestServices-rpcencoded.wsdl"));
-
-		List response = new ArrayList();
-
-		String xml1 = "<ns1:getPersonResponse soapenv:encodingStyle=\"http://schemas.xmlsoap.org/soap/encoding/\" xmlns:ns1=\"urn:testing\" xmlns:soapenv=\"http://schemas.xmlsoap.org/soap/envelope/\"><ns1:getPersonReturn xmlns:ns1=\"urn:testing\" href=\"#id0\"/></ns1:getPersonResponse>";
-		String xml2 = "<multiRef id=\"id0\" soapenc:root=\"0\" soapenv:encodingStyle=\"http://schemas.xmlsoap.org/soap/encoding/\" xmlns:soapenc=\"http://schemas.xmlsoap.org/soap/encoding/\" xmlns:soapenv=\"http://schemas.xmlsoap.org/soap/envelope/\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"><age xsi:type=\"soapenc:string\">5</age><name xsi:type=\"soapenc:string\">bob</name></multiRef>";
-
-		DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-				.newDocumentBuilder();
-		Document doc = builder.parse(new ByteArrayInputStream(xml1.getBytes()));
-
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		doc = builder.parse(new ByteArrayInputStream(xml2.getBytes()));
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		SOAPResponseEncodedMultiRefParser parser = new SOAPResponseEncodedMultiRefParser(
-				wsdlParser.getOperationOutputParameters("getPerson"));
-		parser.setStripAttributes(true);
-		Map outputMap = parser.parse(response);
-
-		assertNotNull("no output map returned", outputMap);
-
-		assertEquals("map should contain 1 element", 1, outputMap.size());
-
-		Object getPersonReturn = outputMap
-				.get("getPersonReturn");
-
-		assertNotNull(
-				"output map should have contained entry for 'getPersonReturn'",
-				getPersonReturn);
-
-		assertEquals("output data should be a string", String.class,
-				getPersonReturn.getClass());
-
-		assertEquals(
-				"unexpected xml content in output",
-				"<getPersonReturn><age>5</age><name>bob</name></getPersonReturn>",
-				getPersonReturn.toString());
-	}
-
-	@SuppressWarnings("unchecked")
-	@Test
-	public void testNestedReferences() throws Exception {
-	
-		//only the name is important.
-		TypeDescriptor descriptor = new ComplexTypeDescriptor();
-		descriptor.setName("result");
-		SOAPResponseEncodedMultiRefParser parser = new SOAPResponseEncodedMultiRefParser(
-				Collections.singletonList(descriptor));
-	
-
-		String xml1 = "<response><result><creatures href=\"#id0\"/></result></response>";
-		String xml2 = "<multiref id=\"id0\"><item href=\"#id1\"/><item href=\"#id2\"/></multiref>";
-		String xml3 = "<multiref id=\"id1\"><creature>monkey</creature></multiref>";
-		String xml4 = "<multiref id=\"id2\"><creature>frog</creature></multiref>";
-
-		List response = new ArrayList();
-
-		DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-				.newDocumentBuilder();
-		Document doc = builder.parse(new ByteArrayInputStream(xml1.getBytes()));
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		doc = builder.parse(new ByteArrayInputStream(xml2.getBytes()));
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		doc = builder.parse(new ByteArrayInputStream(xml3.getBytes()));
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		doc = builder.parse(new ByteArrayInputStream(xml4.getBytes()));
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		
-		parser.setStripAttributes(true);
-
-		Map outputMap = parser.parse(response);
-
-		assertNotNull("no output map returned", outputMap);
-
-		assertEquals("map should contain 1 element", 1, outputMap.size());
-
-		Object result = outputMap.get("result");
-
-		assertNotNull("output map should have contained entry for 'result'",
-				result);
-
-		assertEquals("output data should be a string", String.class, result
-				.getClass());
-
-		assertEquals(
-				"incorrect xml content in output",
-				"<result><creatures><item><creature>monkey</creature></item><item><creature>frog</creature></item></creatures></result>",
-				result.toString());
-
-	}
-
-	@SuppressWarnings("unchecked")
-	@Test
-	public void testFailOnCyclic() throws Exception {
-		List outputNames = new ArrayList();
-		outputNames.add("attachmentList");
-		outputNames.add("result");
-
-		String xml1 = "<response><result><item href=\"#id0\"/></result></response>";
-		String xml2 = "<multiref id=\"id0\"><item href=\"#id1\"/></multiref>";
-		String xml3 = "<multiref id=\"id1\"><item href=\"#id0\"/></multiref>";
-
-		List response = new ArrayList();
-
-		DocumentBuilder builder = DocumentBuilderFactory.newInstance()
-				.newDocumentBuilder();
-		Document doc = builder.parse(new ByteArrayInputStream(xml1.getBytes()));
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		doc = builder.parse(new ByteArrayInputStream(xml2.getBytes()));
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		doc = builder.parse(new ByteArrayInputStream(xml3.getBytes()));
-		response.add(new SOAPBodyElement(doc.getDocumentElement()));
-
-		SOAPResponseEncodedMultiRefParser parser = new SOAPResponseEncodedMultiRefParser(
-				outputNames);
-		parser.setStripAttributes(true);
-
-		try {
-			parser.parse(response);
-			fail("CyclicReferenceException should have been thrown");
-		} catch (CyclicReferenceException e) {
-
-		}
-	}
-
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseParserFactoryTest.java
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseParserFactoryTest.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseParserFactoryTest.java
deleted file mode 100644
index 2faf887..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/soap/SOAPResponseParserFactoryTest.java
+++ /dev/null
@@ -1,64 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.wsdl.soap;
-
-import static org.junit.Assert.assertTrue;
-
-import java.util.ArrayList;
-import java.util.List;
-
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.junit.Test;
-
-public class SOAPResponseParserFactoryTest  implements LocationConstants {
-	
-	private String wsdlResourcePath(String wsdlName) throws Exception {
-		return WSDLTestHelper.wsdlResourcePath(wsdlName);
-	}
-
-	//tests that the factory always returns a SOAPResponseLiteralParser regardless of the 
-	//output mime type, if the use is set to 'literal' (unwrapped/literal)
-	@Test
-	public void testLiteralUnwrappedParserForNonXMLOutput() throws Exception {
-		SOAPResponseParserFactory factory = SOAPResponseParserFactory.instance();
-		List<String> response = new ArrayList<String>();
-		WSDLParser wsdlParser = new WSDLParser(wsdlResourcePath("TestServices-unwrapped.wsdl"));
-		
-		SOAPResponseParser parser = factory.create(response, "literal", "document", wsdlParser.getOperationOutputParameters("getString"));
-		
-		assertTrue("The parser is the wrong type, it was:"+parser.getClass().getSimpleName(),parser instanceof SOAPResponsePrimitiveLiteralParser);
-	}
-	
-	//an additional test using another unwrapped/literal wsdl that returns a primative type
-	@Test
-	public void testLiteralUnwrappedAlternativeWSDL() throws Exception {
-		SOAPResponseParserFactory factory = SOAPResponseParserFactory.instance();
-		List<String> response = new ArrayList<String>();
-		WSDLParser wsdlParser = new WSDLParser(wsdlResourcePath("prodoric.wsdl"));
-		
-		SOAPResponseParser parser = factory.create(response, "literal", "document", wsdlParser.getOperationOutputParameters("hello"));
-		
-		assertTrue("The parser is the wrong type, it was:"+parser.getClass().getSimpleName(),parser instanceof SOAPResponsePrimitiveLiteralParser);
-	}
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/LocationConstants.java
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/LocationConstants.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/LocationConstants.java
deleted file mode 100644
index 437820f..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/LocationConstants.java
+++ /dev/null
@@ -1,32 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.wsdl.testutils;
-
-/**
- * A definition of constants for base locations of external resources used for testing.
- * 
- * @author Stuart Owen
- *
- */
-public interface LocationConstants {
-	
-	public static final String WSDL_RESOURCE_BASE="/testwsdls/";
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/WSDLTestHelper.java
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/WSDLTestHelper.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/WSDLTestHelper.java
deleted file mode 100644
index 66c91ff..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/testutils/WSDLTestHelper.java
+++ /dev/null
@@ -1,51 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.wsdl.testutils;
-
-import java.io.BufferedReader;
-import java.io.InputStream;
-import java.io.InputStreamReader;
-import net.sf.taverna.wsdl.parser.WSDLParserTest;
-
-public class WSDLTestHelper implements LocationConstants {
-	
-	public static String wsdlResourcePath(String resourceName) throws Exception {
-		return WSDLParserTest.class.getResource(WSDL_RESOURCE_BASE+resourceName).toExternalForm();
-	}
-
-    public String getResourceContentsString(String resourceName) throws Exception {
-		InputStream stream = WSDLTestHelper.class.getResourceAsStream("/"+resourceName);
-		BufferedReader reader = new BufferedReader(new InputStreamReader(stream));
-		String content="";
-		String line="";
-		while( (line = reader.readLine()) != null) {
-			content+=line;
-		}
-
-		reader.close();
-
-		return content;
-
-	}
-
-    
-
-}

http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/2e8f451e/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/xmlsplitter/XMLInputSplitterTest.java
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/xmlsplitter/XMLInputSplitterTest.java b/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/xmlsplitter/XMLInputSplitterTest.java
deleted file mode 100644
index 9be24c4..0000000
--- a/taverna-wsdl-generic/src/test/java/net/sf/taverna/wsdl/xmlsplitter/XMLInputSplitterTest.java
+++ /dev/null
@@ -1,95 +0,0 @@
-/*******************************************************************************
- * Copyright (C) 2007 The University of Manchester   
- * 
- *  Modifications to the initial code base are copyright of their
- *  respective authors, or their employers as appropriate.
- * 
- *  This program is free software; you can redistribute it and/or
- *  modify it under the terms of the GNU Lesser General Public License
- *  as published by the Free Software Foundation; either version 2.1 of
- *  the License, or (at your option) any later version.
- *    
- *  This program is distributed in the hope that it will be useful, but
- *  WITHOUT ANY WARRANTY; without even the implied warranty of
- *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
- *  Lesser General Public License for more details.
- *    
- *  You should have received a copy of the GNU Lesser General Public
- *  License along with this program; if not, write to the Free Software
- *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
- ******************************************************************************/
-package net.sf.taverna.wsdl.xmlsplitter;
-
-import static org.junit.Assert.assertNotNull;
-import static org.junit.Assert.assertTrue;
-
-import java.util.HashMap;
-import java.util.Map;
-
-import net.sf.taverna.wsdl.parser.TypeDescriptor;
-import net.sf.taverna.wsdl.parser.WSDLParser;
-import net.sf.taverna.wsdl.testutils.LocationConstants;
-import net.sf.taverna.wsdl.testutils.WSDLTestHelper;
-
-import org.junit.Ignore;
-import org.junit.Test;
-
-public class XMLInputSplitterTest implements LocationConstants {
-
-	@Test
-	public void testExecute() throws Exception {
-		WSDLParser parser = new WSDLParser(WSDLTestHelper.wsdlResourcePath("eutils/eutils_lite.wsdl"));
-		TypeDescriptor descriptor = parser.getOperationInputParameters("run_eInfo").get(0);
-		XMLInputSplitter splitter = new XMLInputSplitter(descriptor,new String[]{"db","tool","email"},new String[]{"text/plain","text/plain","text/plain"},new String[]{"output"});
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		inputMap.put("db", "pubmed");
-		inputMap.put("email", "bob.monkhouse@itv.com");
-		Map<String,String> outputMap = splitter.execute(inputMap);
-		assertNotNull("there should be an output named 'output'",outputMap.containsKey("output"));
-		String xml = outputMap.get("output");
-		assertTrue(xml.startsWith("<parameters xmlns=\"http://www.ncbi.nlm.nih.gov/soap/eutils/einfo\">"));
-		assertTrue(xml.contains("<db>pubmed</db>"));
-		assertTrue(! xml.contains("<tool"));
-		assertTrue(xml.contains("<email>bob.monkhouse@itv.com</email>"));
-	} 
-	
-	
-	@Test
-	public void testOptional() throws Exception {
-		WSDLParser parser = new WSDLParser(WSDLTestHelper.wsdlResourcePath("VSOi.wsdl"));
-		TypeDescriptor descriptor = parser.getOperationInputParameters("Query").get(0);
-		XMLInputSplitter splitter = new XMLInputSplitter(descriptor,new String[]{"version","block"},new String[]{"text/plain","text/plain"},new String[]{"output"});
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		// connect none of the inputs
-		Map<String,String> outputMap = splitter.execute(inputMap);
-		assertNotNull("there should be an output named 'output'",outputMap.containsKey("output"));
-		String xml = outputMap.get("output");
-		// empty string as <block> as it is not nillable
-		assertTrue(xml.contains("<block xmlns=\"\"></block>"));
-		// minOccurs=0 - so it should not be there
-		assertTrue(! xml.contains("<version>"));
-	} 
-	
-	
-	@Test
-	public void testNillable() throws Exception {
-		WSDLParser parser = new WSDLParser(WSDLTestHelper.wsdlResourcePath("VSOi.wsdl"));
-		TypeDescriptor descriptor = parser.getOperationInputParameters("Query").get(0);
-		XMLInputSplitter splitter = new XMLInputSplitter(descriptor,new String[]{"version","block"},new String[]{"text/plain","text/plain"},new String[]{"output"});
-		Map<String,Object> inputMap = new HashMap<String, Object>();
-		// Magic string meaning insert xsi:nil=true
-		inputMap.put("version", "xsi:nil");
-		Map<String,String> outputMap = splitter.execute(inputMap);
-		assertNotNull("there should be an output named 'output'",outputMap.containsKey("output"));
-		String xml = outputMap.get("output");
-		System.out.println(xml);
-		// empty string as <block> as it is not nillable
-		assertTrue(xml.contains("<block xmlns=\"\"></block>"));
-		// FIXME: Should not really allow nil=true here, as version is not nillable! 
-		assertTrue(xml.contains("<version xmlns=\"\" " +
-				"xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" " +
-				"xsi:nil=\"true\" />"));
-	} 
-	
-	
-}