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Posted to dev@ctakes.apache.org by Pedro Teixeira <te...@gmail.com> on 2015/04/02 23:37:32 UTC
Running cTAKES via command line
Hello, I've got an installation of cTAKES running but am unsure of how to
run it via commandline only. I'd like to write a script to automate
processing and skip the GUI. A quick search hasn't turned anything up. Any
advice on how to do that? Will I have to dig into the code to do this?
Thanks!
Re: Running cTAKES via command line
Posted by Pei Chen <ch...@apache.org>.
Take one of the existing startup scripts such as
http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-distribution/src/main/bin/runctakesCPE.sh
Replace the main class org.apache.uima.tools.cpm.CpmFrame with ->
*org.apache.ctakes.ytex.tools.RunCPE or *
*org.apache.ctakes.core.cpe.CmdLineCpeRunner or*
*org.apache.uima.examples.cpe.SimpleRunCPM (requires uima examples jar)*
On Fri, Apr 3, 2015 at 11:18 AM, Pedro Teixeira <te...@gmail.com>
wrote:
> Pei Chen <ch...@...> writes:
>
> >
> > There were a couple of recent threads about this [1]. In particular
> search
> > for:
> > CmdLineCpeRunner.java and RunCPE.java
> >
> > [1]
> > http://mail-archives.apache.org/mod_mbox/ctakes-
> dev/201502.mbox/%3cCAHnnHnZFde5MF6dDV6Y2R4jyYgua1a43SrdNZRsKJQWDDtiB8w-
> JsoAwUIsXosN+BqQ9rBEUg <at> public.gmane.org%3e
> >
> > We should probably add it to the wiki documentation or FAQ...
> >
> > On Thu, Apr 2, 2015 at 10:58 PM, Pedro Teixeira <te...@...>
> > wrote:
> >
> > > John Green <john.travis.green <at> ...> writes:
> > >
> > > >
> > > > Hi!
> > > > It depends on what you mean by run on the command line... Can you
> > > clarify the use case?Jg
> > > >
> > > > On Thu, Apr 2, 2015 at 5:42 PM, Pedro Teixeira <teixeira09 <at>
> ...>
> > > > wrote:
> > > >
> > > > > Hello, I've got an installation of cTAKES running but am unsure
> of how
> > > to
> > > > > run it via commandline only. I'd like to write a script to
> automate
> > > > > processing and skip the GUI. A quick search hasn't turned
> anything up.
> > > Any
> > > > > advice on how to do that? Will I have to dig into the code to do
> this?
> > > > > Thanks!
> > >
> > >
> > > I'd like to have as input a string/file/directory with files and
> then call
> > > cTAKES to process and output the XML result (picking one of the
> analysis
> > > engines/setting parameters upon initiation). I want to just run this
> > > without having to boot up the GUI and manually select everything and
> click
> > > run. Seems easiest to automate that if I can run it via command line
> and
> > > then just write scripts around that.
> > >
> > > Thanks!
> > >
> > >
> >
>
>
> That looks like it'll do the trick although I'm having a little bit of
> trouble invoking it from the command line. I keep getting "Cold not find
> or load main class " errors. Unfortunately my Java is a bit rusty. I
> have the -cp argument in for all the paths but then when I go manually
> searching around I can't find the correct class. I'm assuming it's just
> contained in the .jar files but despite providing the /lib/* to -cp it
> doesn't seem to be finding it. Any advice? Perhaps an example command
> line invoking the CmdLineCpeRunner?
>
> Thanks so much for your help!
>
>
Re: Running cTAKES via command line
Posted by Pedro Teixeira <te...@gmail.com>.
Pei Chen <ch...@...> writes:
>
> There were a couple of recent threads about this [1]. In particular
search
> for:
> CmdLineCpeRunner.java and RunCPE.java
>
> [1]
> http://mail-archives.apache.org/mod_mbox/ctakes-
dev/201502.mbox/%3cCAHnnHnZFde5MF6dDV6Y2R4jyYgua1a43SrdNZRsKJQWDDtiB8w-
JsoAwUIsXosN+BqQ9rBEUg <at> public.gmane.org%3e
>
> We should probably add it to the wiki documentation or FAQ...
>
> On Thu, Apr 2, 2015 at 10:58 PM, Pedro Teixeira <te...@...>
> wrote:
>
> > John Green <john.travis.green <at> ...> writes:
> >
> > >
> > > Hi!
> > > It depends on what you mean by run on the command line... Can you
> > clarify the use case?Jg
> > >
> > > On Thu, Apr 2, 2015 at 5:42 PM, Pedro Teixeira <teixeira09 <at>
...>
> > > wrote:
> > >
> > > > Hello, I've got an installation of cTAKES running but am unsure
of how
> > to
> > > > run it via commandline only. I'd like to write a script to
automate
> > > > processing and skip the GUI. A quick search hasn't turned
anything up.
> > Any
> > > > advice on how to do that? Will I have to dig into the code to do
this?
> > > > Thanks!
> >
> >
> > I'd like to have as input a string/file/directory with files and
then call
> > cTAKES to process and output the XML result (picking one of the
analysis
> > engines/setting parameters upon initiation). I want to just run this
> > without having to boot up the GUI and manually select everything and
click
> > run. Seems easiest to automate that if I can run it via command line
and
> > then just write scripts around that.
> >
> > Thanks!
> >
> >
>
That looks like it'll do the trick although I'm having a little bit of
trouble invoking it from the command line. I keep getting "Cold not find
or load main class " errors. Unfortunately my Java is a bit rusty. I
have the -cp argument in for all the paths but then when I go manually
searching around I can't find the correct class. I'm assuming it's just
contained in the .jar files but despite providing the /lib/* to -cp it
doesn't seem to be finding it. Any advice? Perhaps an example command
line invoking the CmdLineCpeRunner?
Thanks so much for your help!
Re: Running cTAKES via command line
Posted by Pei Chen <ch...@apache.org>.
There were a couple of recent threads about this [1]. In particular search
for:
CmdLineCpeRunner.java and RunCPE.java
[1]
http://mail-archives.apache.org/mod_mbox/ctakes-dev/201502.mbox/%3cCAHnnHnZFde5MF6dDV6Y2R4jyYgua1a43SrdNZRsKJQWDDtiB8w@mail.gmail.com%3e
We should probably add it to the wiki documentation or FAQ...
On Thu, Apr 2, 2015 at 10:58 PM, Pedro Teixeira <te...@gmail.com>
wrote:
> John Green <jo...@...> writes:
>
> >
> > Hi!
> > It depends on what you mean by run on the command line... Can you
> clarify the use case?Jg
> >
> > On Thu, Apr 2, 2015 at 5:42 PM, Pedro Teixeira <te...@...>
> > wrote:
> >
> > > Hello, I've got an installation of cTAKES running but am unsure of how
> to
> > > run it via commandline only. I'd like to write a script to automate
> > > processing and skip the GUI. A quick search hasn't turned anything up.
> Any
> > > advice on how to do that? Will I have to dig into the code to do this?
> > > Thanks!
>
>
> I'd like to have as input a string/file/directory with files and then call
> cTAKES to process and output the XML result (picking one of the analysis
> engines/setting parameters upon initiation). I want to just run this
> without having to boot up the GUI and manually select everything and click
> run. Seems easiest to automate that if I can run it via command line and
> then just write scripts around that.
>
> Thanks!
>
>
Re: Running cTAKES via command line
Posted by Pedro Teixeira <te...@gmail.com>.
John Green <jo...@...> writes:
>
> Hi!
> It depends on what you mean by run on the command line... Can you
clarify the use case?Jg
>
> On Thu, Apr 2, 2015 at 5:42 PM, Pedro Teixeira <te...@...>
> wrote:
>
> > Hello, I've got an installation of cTAKES running but am unsure of how
to
> > run it via commandline only. I'd like to write a script to automate
> > processing and skip the GUI. A quick search hasn't turned anything up.
Any
> > advice on how to do that? Will I have to dig into the code to do this?
> > Thanks!
I'd like to have as input a string/file/directory with files and then call
cTAKES to process and output the XML result (picking one of the analysis
engines/setting parameters upon initiation). I want to just run this
without having to boot up the GUI and manually select everything and click
run. Seems easiest to automate that if I can run it via command line and
then just write scripts around that.
Thanks!
Re: Running cTAKES via command line
Posted by John Green <jo...@gmail.com>.
Hi!
It depends on what you mean by run on the command line... Can you clarify the use case?Jg
On Thu, Apr 2, 2015 at 5:42 PM, Pedro Teixeira <te...@gmail.com>
wrote:
> Hello, I've got an installation of cTAKES running but am unsure of how to
> run it via commandline only. I'd like to write a script to automate
> processing and skip the GUI. A quick search hasn't turned anything up. Any
> advice on how to do that? Will I have to dig into the code to do this?
> Thanks!