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Posted to dev@ctakes.apache.org by "Savova, Guergana" <Gu...@childrens.harvard.edu> on 2014/12/05 17:28:01 UTC

gold standard annotations for Apache cTAKES sample notes

Thanks to John Green, we now have sample clinical notes in cTAKES. Many thanks, John, for your effort!

We will take these notes and will start generating gold annotations that could be used then to compare cTAKES output to. We are planning to include annotations for:

1.       Entities with the attributes

2.       LocationOf and DegreeOf relations

3.       Within-document coreference

4.       Events

5.       Temporal expressions

6.       Temporal relations

Effort permitting, we also have on the list annotations for:

1.       Syntactic trees

2.       Dependency links

3.       Semantic roles

It will take us some time to generate the gold annotations, we will keep you posted on the progress.
Cheers,
--Guergana

Re: gold standard annotations for Apache cTAKES sample notes

Posted by John Green <jo...@gmail.com>.

Thank you for the thanks! If its at all helpful, I can expand the note base at some point.


Best,

JG
—
Sent from Mailbox

On Fri, Dec 5, 2014 at 11:32 AM, Savova, Guergana
<Gu...@childrens.harvard.edu> wrote:

> Thanks to John Green, we now have sample clinical notes in cTAKES. Many thanks, John, for your effort!
> We will take these notes and will start generating gold annotations that could be used then to compare cTAKES output to. We are planning to include annotations for:
> 1.       Entities with the attributes
> 2.       LocationOf and DegreeOf relations
> 3.       Within-document coreference
> 4.       Events
> 5.       Temporal expressions
> 6.       Temporal relations
> Effort permitting, we also have on the list annotations for:
> 1.       Syntactic trees
> 2.       Dependency links
> 3.       Semantic roles
> It will take us some time to generate the gold annotations, we will keep you posted on the progress.
> Cheers,
> --Guergana

Re: gold standard annotations for Apache cTAKES sample notes

Posted by andy mcmurry <mc...@gmail.com>.

This is great, thanks John green !
On Dec 5, 2014 8:32 AM, "Savova, Guergana" <
Guergana.Savova@childrens.harvard.edu> wrote:

> Thanks to John Green, we now have sample clinical notes in cTAKES. Many
> thanks, John, for your effort!
>
> We will take these notes and will start generating gold annotations that
> could be used then to compare cTAKES output to. We are planning to include
> annotations for:
>
> 1.       Entities with the attributes
>
> 2.       LocationOf and DegreeOf relations
>
> 3.       Within-document coreference
>
> 4.       Events
>
> 5.       Temporal expressions
>
> 6.       Temporal relations
>
> Effort permitting, we also have on the list annotations for:
>
> 1.       Syntactic trees
>
> 2.       Dependency links
>
> 3.       Semantic roles
>
> It will take us some time to generate the gold annotations, we will keep
> you posted on the progress.
> Cheers,
> --Guergana
>