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Posted to dev@ctakes.apache.org by "Masanz, James J." <Ma...@mayo.edu> on 2013/02/21 06:15:04 UTC
RE: [jira] [Commented] (CTAKES-165) no maven profiles for running
via maven other than mvn -PrunCPE and mvn -RrunCVD which are in
ctakes-clinical-pipeline
I'm uneasy about that but I can't explain why exactly.
I would be more comfortable having the dependencies match/describe the real dependencies.
________________________________________
From: ctakes-notifications-return-399-Masanz.James=mayo.edu@incubator.apache.org [ctakes-notifications-return-399-Masanz.James=mayo.edu@incubator.apache.org] on behalf of Pei Chen (JIRA) [jira@apache.org]
Sent: Wednesday, February 20, 2013 8:30 PM
To: ctakes-notifications@incubator.apache.org
Subject: [jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline
[ https://issues.apache.org/jira/browse/CTAKES-165?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13582813#comment-13582813 ]
Pei Chen commented on CTAKES-165:
---------------------------------
should we just add all available modules as a dependency in the ctakes-clinical-pipeline? irrespective if it's used or not...
> no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline
> ----------------------------------------------------------------------------------------------------------------------
>
> Key: CTAKES-165
> URL: https://issues.apache.org/jira/browse/CTAKES-165
> Project: cTAKES
> Issue Type: Bug
> Components: ctakes-drug-ner, ctakes-pad-term-spotter, ctakes-relation-extractor, ctakes-side-effect, ctakes-smoking-status
> Affects Versions: 3.0-incubating
> Reporter: James Joseph Masanz
> Priority: Minor
>
> It would be good to have other profiles than just those in ctakes-clinical-pipeline
> The two existing profiles don't compile some of the other components like ctakes-drug-ner or ctakes-relation-extractor and since the existing ones are in ctakes-clinical-pipeline they don't have everything on the classpath needed to run those other components.
> I noticed this while I was running
> mvn -PrunCVD compile
> and tried to load the relation extractor aggregate.
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Re: [jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline
Posted by Andy McMurry <mc...@gmail.com>.
+1 suggestion for real dependencies
On Feb 20, 2013, at 9:15 PM, "Masanz, James J." <Ma...@mayo.edu> wrote:
>
> I'm uneasy about that but I can't explain why exactly.
> I would be more comfortable having the dependencies match/describe the real dependencies.
>
> ________________________________________
> From: ctakes-notifications-return-399-Masanz.James=mayo.edu@incubator.apache.org [ctakes-notifications-return-399-Masanz.James=mayo.edu@incubator.apache.org] on behalf of Pei Chen (JIRA) [jira@apache.org]
> Sent: Wednesday, February 20, 2013 8:30 PM
> To: ctakes-notifications@incubator.apache.org
> Subject: [jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline
>
> [ https://issues.apache.org/jira/browse/CTAKES-165?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13582813#comment-13582813 ]
>
> Pei Chen commented on CTAKES-165:
> ---------------------------------
>
> should we just add all available modules as a dependency in the ctakes-clinical-pipeline? irrespective if it's used or not...
>
>> no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline
>> ----------------------------------------------------------------------------------------------------------------------
>>
>> Key: CTAKES-165
>> URL: https://issues.apache.org/jira/browse/CTAKES-165
>> Project: cTAKES
>> Issue Type: Bug
>> Components: ctakes-drug-ner, ctakes-pad-term-spotter, ctakes-relation-extractor, ctakes-side-effect, ctakes-smoking-status
>> Affects Versions: 3.0-incubating
>> Reporter: James Joseph Masanz
>> Priority: Minor
>>
>> It would be good to have other profiles than just those in ctakes-clinical-pipeline
>> The two existing profiles don't compile some of the other components like ctakes-drug-ner or ctakes-relation-extractor and since the existing ones are in ctakes-clinical-pipeline they don't have everything on the classpath needed to run those other components.
>> I noticed this while I was running
>> mvn -PrunCVD compile
>> and tried to load the relation extractor aggregate.
>
> --
> This message is automatically generated by JIRA.
> If you think it was sent incorrectly, please contact your JIRA administrators
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Re: [jira] [Commented] (CTAKES-165) no maven profiles for running
via maven other than mvn -PrunCPE and mvn -RrunCVD which are in
ctakes-clinical-pipeline
Posted by "Chen, Pei" <Pe...@childrens.harvard.edu>.
Might be worth it to refresh my memory again on the purpose of the clinical-pipeline module? I always thought it was used as a starting point for users that have a complete configuration with a components wired together.
Sent from my iPhone
On Feb 21, 2013, at 12:15 AM, "Masanz, James J." <Ma...@mayo.edu> wrote:
>
> I'm uneasy about that but I can't explain why exactly.
> I would be more comfortable having the dependencies match/describe the real dependencies.
>
> ________________________________________
> From: ctakes-notifications-return-399-Masanz.James=mayo.edu@incubator.apache.org [ctakes-notifications-return-399-Masanz.James=mayo.edu@incubator.apache.org] on behalf of Pei Chen (JIRA) [jira@apache.org]
> Sent: Wednesday, February 20, 2013 8:30 PM
> To: ctakes-notifications@incubator.apache.org
> Subject: [jira] [Commented] (CTAKES-165) no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline
>
> [ https://issues.apache.org/jira/browse/CTAKES-165?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13582813#comment-13582813 ]
>
> Pei Chen commented on CTAKES-165:
> ---------------------------------
>
> should we just add all available modules as a dependency in the ctakes-clinical-pipeline? irrespective if it's used or not...
>
>> no maven profiles for running via maven other than mvn -PrunCPE and mvn -RrunCVD which are in ctakes-clinical-pipeline
>> ----------------------------------------------------------------------------------------------------------------------
>>
>> Key: CTAKES-165
>> URL: https://issues.apache.org/jira/browse/CTAKES-165
>> Project: cTAKES
>> Issue Type: Bug
>> Components: ctakes-drug-ner, ctakes-pad-term-spotter, ctakes-relation-extractor, ctakes-side-effect, ctakes-smoking-status
>> Affects Versions: 3.0-incubating
>> Reporter: James Joseph Masanz
>> Priority: Minor
>>
>> It would be good to have other profiles than just those in ctakes-clinical-pipeline
>> The two existing profiles don't compile some of the other components like ctakes-drug-ner or ctakes-relation-extractor and since the existing ones are in ctakes-clinical-pipeline they don't have everything on the classpath needed to run those other components.
>> I noticed this while I was running
>> mvn -PrunCVD compile
>> and tried to load the relation extractor aggregate.
>
> --
> This message is automatically generated by JIRA.
> If you think it was sent incorrectly, please contact your JIRA administrators
> For more information on JIRA, see: http://www.atlassian.com/software/jira