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Posted to dev@ctakes.apache.org by Sangram Patil <sa...@figmd.com> on 2015/05/18 08:17:53 UTC
Content extract and classification of Patient's note
Hi,
I am pretty new to cTakes, and need to extract fields from text note of
patient. Could you please tell me which AE is suitable. Also can I have
some sample code examples for my job. Attached is the sample patient note.
--
Sincerely,
Sangram Patil
RE: Content extract and classification of Patient's note
Posted by "Savova, Guergana" <Gu...@childrens.harvard.edu>.
You would probably need to write an annotator for PSA and TNM staging as currently cTAKES does not these cancer-specific variables extracted. We are working on such annotators but will be some time before we release them.
However, it should not be difficult for you to add a new annotator.
--Guergana Savova
From: Sangram Patil [mailto:sangramp@figmd.com]
Sent: Wednesday, May 20, 2015 10:02 AM
To: dev@ctakes.apache.org
Subject: Re: Content extract and classification of Patient's note
Thanks for the information!!!
I have notes of cancer patients and would like to extract values such PSA, Gleason TNM staging mentioned in the text-note. Could you please provide inputs.
On Mon, May 18, 2015 at 6:40 PM, Chen, Pei <Pe...@childrens.harvard.edu>> wrote:
Sangram,
cTAKES is modular by design so it is comprised of a collection of components/modules with some Default or Sample Aggregate pipelines. There could be an endless combination depending on the task at hand. I would suggest checking out the components guide (even though it may be outdated) to figure out what would be needed for a specific task...
On May 18, 2015, at 2:18 AM, Sangram Patil <sa...@figmd.com>>> wrote:
Hi,
I am pretty new to cTakes, and need to extract fields from text note of patient. Could you please tell me which AE is suitable. Also can I have some sample code examples for my job. Attached is the sample patient note.
--
Sincerely,
Sangram Patil
<Patient-note.txt>
--
* Please include your practice ID in your correspondence.
Sincerely,
Sangram Patil
Team Lead-Core Dev
Cell: +91 992 293 9497
[cid:8DBA14FA-A66C-440F-B247-FE46832624AA]
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Re: Content extract and classification of Patient's note
Posted by Sangram Patil <sa...@figmd.com>.
Thanks for the information!!!
I have notes of cancer patients and would like to extract values such PSA,
Gleason TNM staging mentioned in the text-note. Could you please provide
inputs.
On Mon, May 18, 2015 at 6:40 PM, Chen, Pei <Pe...@childrens.harvard.edu>
wrote:
> Sangram,
> cTAKES is modular by design so it is comprised of a collection of
> components/modules with some Default or Sample Aggregate pipelines. There
> could be an endless combination depending on the task at hand. I would
> suggest checking out the components guide (even though it may be outdated)
> to figure out what would be needed for a specific task...
>
>
>
> On May 18, 2015, at 2:18 AM, Sangram Patil <sangramp@figmd.com<mailto:
> sangramp@figmd.com>> wrote:
>
> Hi,
>
> I am pretty new to cTakes, and need to extract fields from text note of
> patient. Could you please tell me which AE is suitable. Also can I have
> some sample code examples for my job. Attached is the sample patient note.
>
> --
>
> Sincerely,
> Sangram Patil
>
> <Patient-note.txt>
>
--
** Please include your practice ID in your correspondence.*
Sincerely,
Sangram Patil
Team Lead-Core Dev
Cell: +91 992 293 9497
figmd.com <http://www.figmd.com/>
CONFIDENTIALITY NOTICE <http://www.figmd.com/terms/>
Re: Content extract and classification of Patient's note
Posted by "Chen, Pei" <Pe...@childrens.harvard.edu>.
Sangram,
cTAKES is modular by design so it is comprised of a collection of components/modules with some Default or Sample Aggregate pipelines. There could be an endless combination depending on the task at hand. I would suggest checking out the components guide (even though it may be outdated) to figure out what would be needed for a specific task...
On May 18, 2015, at 2:18 AM, Sangram Patil <sa...@figmd.com>> wrote:
Hi,
I am pretty new to cTakes, and need to extract fields from text note of patient. Could you please tell me which AE is suitable. Also can I have some sample code examples for my job. Attached is the sample patient note.
--
Sincerely,
Sangram Patil
<Patient-note.txt>