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Posted to commits@taverna.apache.org by st...@apache.org on 2018/01/10 00:24:36 UTC
[1/2] incubator-taverna-server git commit: Modernize doi.org hyperlink
Repository: incubator-taverna-server
Updated Branches:
refs/heads/master 46777e2c6 -> acce30332
Modernize doi.org hyperlink
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/commit/ba8577ea
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/tree/ba8577ea
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/diff/ba8577ea
Branch: refs/heads/master
Commit: ba8577ea2d0d97413b450429ec7cc06bf3b55d0d
Parents: 46777e2
Author: Stian Soiland-Reyes <st...@apache.org>
Authored: Wed Jan 10 00:01:06 2018 +0000
Committer: Stian Soiland-Reyes <st...@apache.org>
Committed: Wed Jan 10 00:01:06 2018 +0000
----------------------------------------------------------------------
CITATION | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/ba8577ea/CITATION
----------------------------------------------------------------------
diff --git a/CITATION b/CITATION
index fd17bfc..9c3d697 100644
--- a/CITATION
+++ b/CITATION
@@ -4,14 +4,14 @@ Wolstencroft, K., Haines, R., Fellows, D., Williams, A., Withers, D.,
Balcazar Vargas, M.P., Sufi, S., and Goble, C. 2013.
The Taverna workflow suite: designing and executing workflows of Web Services
on the desktop, web or in the cloud. Nucl. Acids Res. gkt328v1
-http://doi.org/doi:10.1093/nar/gkt328
+https://doi.org/10.1093/nar/gkt328
@article{Wolstencroft02052013,
author = {Wolstencroft, Katherine and Haines, Robert and Fellows, Donal and Williams, Alan and Withers, David and Owen, Stuart and Soiland-Reyes, Stian and Dunlop, Ian and Nenadic, Aleksandra and Fisher, Paul and Bhagat, Jiten and Belhajjame, Khalid and Bacall, Finn and Hardisty, Alex and Nieva de la Hidalga, Abraham and Balcazar Vargas, Maria P. and Sufi, Shoaib and Goble, Carole},
title = {The {Taverna} workflow suite: designing and executing workflows of {Web Services} on the desktop, web or in the cloud},
year = {2013},
doi = {10.1093/nar/gkt328},
- abstract ={The Taverna workflow tool suite (http://www.taverna.org.uk) is designed to combine distributed Web Services and/or local tools into complex analysis pipelines. These pipelines can be executed on local desktop machines or through larger infrastructure (such as supercomputers, Grids or cloud environments), using the Taverna Server. In bioinformatics, Taverna workflows are typically used in the areas of high-throughput omics analyses (for example, proteomics or transcriptomics), or for evidence gathering methods involving text mining or data mining. Through Taverna, scientists have access to several thousand different tools and resources that are freely available from a large range of life science institutions. Once constructed, the workflows are reusable, executable bioinformatics protocols that can be shared, reused and repurposed. A repository of public workflows is available at http://www.myexperiment.org. This article provides an update to the Taverna tool suite, high
lighting new features and developments in the workbench and the Taverna Server.},
+ abstract ={The Taverna workflow tool suite is designed to combine distributed Web Services and/or local tools into complex analysis pipelines. These pipelines can be executed on local desktop machines or through larger infrastructure (such as supercomputers, Grids or cloud environments), using the Taverna Server. In bioinformatics, Taverna workflows are typically used in the areas of high-throughput omics analyses (for example, proteomics or transcriptomics), or for evidence gathering methods involving text mining or data mining. Through Taverna, scientists have access to several thousand different tools and resources that are freely available from a large range of life science institutions. Once constructed, the workflows are reusable, executable bioinformatics protocols that can be shared, reused and repurposed. A repository of public workflows is available at http://www.myexperiment.org. This article provides an update to the Taverna tool suite, highlighting new features and de
velopments in the workbench and the Taverna Server.},
URL = {http://nar.oxfordjournals.org/content/early/2013/05/02/nar.gkt328.abstract},
eprint = {http://nar.oxfordjournals.org/content/early/2013/05/02/nar.gkt328.full.pdf+html},
journal = {Nucleic Acids Research}
[2/2] incubator-taverna-server git commit: corrected paths in
datanucleus config
Posted by st...@apache.org.
corrected paths in datanucleus config
(paths got broken by 46777e2c6624c382edfd65949ab515cafd1c7e37)
Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/repo
Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/commit/acce3033
Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/tree/acce3033
Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/diff/acce3033
Branch: refs/heads/master
Commit: acce303323de7de676d8243e2a2f56d302b3df95
Parents: ba8577e
Author: Stian Soiland-Reyes <st...@apache.org>
Authored: Wed Jan 10 00:22:38 2018 +0000
Committer: Stian Soiland-Reyes <st...@apache.org>
Committed: Wed Jan 10 00:22:38 2018 +0000
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taverna-server-webapp/pom.xml | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
----------------------------------------------------------------------
http://git-wip-us.apache.org/repos/asf/incubator-taverna-server/blob/acce3033/taverna-server-webapp/pom.xml
----------------------------------------------------------------------
diff --git a/taverna-server-webapp/pom.xml b/taverna-server-webapp/pom.xml
index e8ed5d7..f2b1351 100644
--- a/taverna-server-webapp/pom.xml
+++ b/taverna-server-webapp/pom.xml
@@ -539,12 +539,12 @@ limitations under the License.
<configuration>
<fork>false</fork>
<metadataIncludes>
- org.apache.taverna/server/master/*.class,
- org.apache.taverna/server/master/identity/*.class,
- org.apache.taverna/server/master/localworker/*.class,
- org.apache.taverna/server/master/notification/atom/*.class,
- org.apache.taverna/server/master/usage/*.class,
- org.apache.taverna/server/master/worker/*.class
+ org/apache/taverna/server/master/*.class,
+ org/apache/taverna/server/master/identity/*.class,
+ org/apache/taverna/server/master/localworker/*.class,
+ org/apache/taverna/server/master/notification/atom/*.class,
+ org/apache/taverna/server/master/usage/*.class,
+ org/apache/taverna/server/master/worker/*.class
</metadataIncludes>
</configuration>
<executions>