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Posted to issues@spark.apache.org by "Yuming Wang (Jira)" <ji...@apache.org> on 2020/10/08 12:56:00 UTC

[jira] [Commented] (SPARK-33093) Why do my Spark 3 jobs fail to use external shuffle service on YARN?

    [ https://issues.apache.org/jira/browse/SPARK-33093?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17210186#comment-17210186 ] 

Yuming Wang commented on SPARK-33093:
-------------------------------------

Try to set {{spark.shuffle.useOldFetchProtocol}} to {{true}}. Please see [Migration Guide: Spark Core|http://spark.apache.org/docs/3.0.0/core-migration-guide.html] for more details.

> Why do my Spark 3 jobs fail to use external shuffle service on YARN?
> --------------------------------------------------------------------
>
>                 Key: SPARK-33093
>                 URL: https://issues.apache.org/jira/browse/SPARK-33093
>             Project: Spark
>          Issue Type: Question
>          Components: Deploy, Java API
>    Affects Versions: 3.0.0
>            Reporter: Julien
>            Priority: Minor
>              Labels: beginner, newbie
>
> We are running a Spark-on-YARN setup, where each client uploads their own Spark JARs for their job, to run in YARN executors. YARN exposes a shuffle service on every NodeManager's 7337 port, and clients enable use of that.
> This has worked for a while, with clients using Spark 2 JARs, but we are seeing issues when clients attempt to use Spark 3 JAR. When shuffling is either disabled, or enabled but no use of the shuffle service is made, things seems to continue working in Spark 3.
> When a Spark 3 job attempts to use the external service, we get a stack-trace that looks like this:
> {noformat}java.lang.IllegalArgumentException: Unknown message type: 10
> 	at org.apache.spark.network.shuffle.protocol.BlockTransferMessage$Decoder.fromByteBuffer(BlockTransferMessage.java:67)
> 	at org.apache.spark.network.shuffle.ExternalShuffleBlockHandler.receive(ExternalShuffleBlockHandler.java:71)
> 	at org.apache.spark.network.server.TransportRequestHandler.processRpcRequest(TransportRequestHandler.java:154)
> 	at org.apache.spark.network.server.TransportRequestHandler.handle(TransportRequestHandler.java:102)
> 	at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:104)
> 	at org.apache.spark.network.server.TransportChannelHandler.channelRead0(TransportChannelHandler.java:51)
> 	at io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105)
> 	at ...{noformat}
> Message type 10 was introduced as of SPARK-27651, released in Spark 3.0.0; this error hints at an older version of {{BlockTransferMessage$Decoder.fromByteBuffer}} being used.
> {{ExternalShuffleBlockHandler}} was renamed to {{ExternalBlockHandler}} as of SPARK-28593, also released in Spark 3.0.0; this stack-trace hints at an older JAR being loaded.
> Our current Hadoop setup (Cloudera CDH parcels) is very likely to be polluting the class-path with older JARs. Trying to figure out where the old JARs come from, I added {{-verbose:class}} to the executor options, to log all class loading.
> This is where things get interesting: there is no mention of the old {{ExternalShuffleBlockHandler}} class anywhere, and {{BlockTransferMessage$Decoder}} is reported as loaded from the Spark 3 JARs:
> {noformat}grep -E 'org.apache.spark.network.shuffle.protocol.BlockTransferMessage|org.apache.spark.network.shuffle.ExternalShuffleBlockHandler|org.apache.spark.network.server.TransportRequestHandler|org.apache.spark.network.server.TransportChannelHandler|org.apache.spark.network.shuffle.ExternalBlockHandler' example_shuffle_stdout.txt
> [Loaded org.apache.spark.network.server.TransportRequestHandler from file:/hadoop/2/yarn/nm/filecache/0/2170513/spark-network-common_2.12-3.0.0.jar]
> [Loaded org.apache.spark.network.server.TransportChannelHandler from file:/hadoop/2/yarn/nm/filecache/0/2170513/spark-network-common_2.12-3.0.0.jar]
> [Loaded org.apache.spark.network.shuffle.protocol.BlockTransferMessage from file:/hadoop/1/yarn/nm/filecache/0/2170571/spark-network-shuffle_2.12-3.0.0.jar]
> [Loaded org.apache.spark.network.shuffle.protocol.BlockTransferMessage$Type from file:/hadoop/1/yarn/nm/filecache/0/2170571/spark-network-shuffle_2.12-3.0.0.jar]
> [Loaded org.apache.spark.network.shuffle.protocol.BlockTransferMessage$Decoder from file:/hadoop/1/yarn/nm/filecache/0/2170571/spark-network-shuffle_2.12-3.0.0.jar]
> [Loaded org.apache.spark.network.server.TransportRequestHandler$1 from file:/hadoop/2/yarn/nm/filecache/0/2170513/spark-network-common_2.12-3.0.0.jar]
> [Loaded org.apache.spark.network.server.TransportRequestHandler$$Lambda$666/376989599 from org.apache.spark.network.server.TransportRequestHandler]{noformat}
> I do not know how this is possible:
> - is the executor reporting a stack-trace that comes from another process rather than itself?
> - are old classes loaded without being reported by {{-verbose:class}}?
> I'm not sure how to investigate this further, as I failed to locate precisely how the instance of {{RpcHandler}} is injected into the {{TransportRequestHandler}} for my executors.
> I did try setting {{spark.executor.userClassPathFirst}} to {{true}} but that made no difference: I could confirm this was enabled in the Spark UI's Environment tab, and still got the same error. I also tried setting {{spark.jars}} and {{spark.yarn.jars}} to explicitly point to the user's Spark JARs, but that did not work: the value for those two keys was still empty in the Spark UI's Environment tab.
> What am I missing here?
> What should I try next?



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