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Posted to dev@ctakes.apache.org by "Liang, Yu" <Yu...@nyumc.org> on 2014/12/15 22:46:11 UTC
Problem running cTakes-clinical pipeline -->
AggregatePlaintextFastUMLSProcessor.xml
Hi Yu,
I think this is a current limitation in cTAKES. I think it has to do with negation not detecting if the line breaks are separating the sentences.
Would you mind forwarding the example to dev@ctakes.apache.org<ma...@ctakes.apache.org>?
I think Tim and others may be working on this issue.
--Pei
On Mon, Dec 15, 2014 at 3:54 PM, Liang, Yu <Yu...@nyumc.org>> wrote:
On Dec 15, 2014, at 2:58 PM, Liang, Yu <Yu...@nyumc.org>> wrote:
Hi Pei Chen,
Could you please look at the following example I run, I think the result is not accurate. The polarity of illness is -1 but for fever, vomiting, diarrhea,and pain are all +1.
Also do you know is there any command line I can run to annotate like a thousand files automatically rather than copy and paster.
Yu Liang
[cid:DF19883E-B993-4CD0-90BD-F285A3C1A5A3@wireless.nyumc.org]
Yu Liang
CHIBI
RE: Problem running cTakes-clinical pipeline -->
AggregatePlaintextFastUMLSProcessor.xml
Posted by "Finan, Sean" <Se...@childrens.harvard.edu>.
Hi Yu,
> Also do you know is there any command line I can run to annotate like a thousand files automatically rather than copy and paster.
You could try the CPE gui : bin/runctakesCPE.sh
Sean
From: Liang, Yu [mailto:Yu.Liang@nyumc.org]
Sent: Monday, December 15, 2014 4:51 PM
To: dev@ctakes.apache.org
Subject: Problem running cTakes-clinical pipeline --> AggregatePlaintextFastUMLSProcessor.xml
Hi Yu,
I think this is a current limitation in cTAKES. I think it has to do with negation not detecting if the line breaks are separating the sentences.
Would you mind forwarding the example to dev@ctakes.apache.org<ma...@ctakes.apache.org>?
I think Tim and others may be working on this issue.
--Pei
On Mon, Dec 15, 2014 at 3:54 PM, Liang, Yu <Yu...@nyumc.org>> wrote:
On Dec 15, 2014, at 2:58 PM, Liang, Yu <Yu...@nyumc.org>> wrote:
Hi Pei Chen,
Could you please look at the following example I run, I think the result is not accurate. The polarity of illness is -1 but for fever, vomiting, diarrhea,and pain are all +1.
Also do you know is there any command line I can run to annotate like a thousand files automatically rather than copy and paster.
Yu Liang
[cid:DF19883E-B993-4CD0-90BD-F285A3C1A5A3@wireless.nyumc.org]
Yu Liang
CHIBI