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Posted to dev@ctakes.apache.org by "Hari, Sekhar" <se...@cgi.com> on 2015/08/04 04:34:45 UTC
RE: cTAKES GUI for I2B2
Hello there -
Please, can somebody advise me on my question below?
Thanks,
Sekhar H.
________________________________
From: Hari, Sekhar
Sent: 31 July 2015 15:02
To: chenpei@apache.org
Subject: cTAKES GUI for I2B2
Hello Pei –
Can you please assist me. I am doing a few experiments using I2B2. There is a requirement for me to use cTAKES for reading clinical notes and to extract the key terminologies from the notes so it can be inserted into I2B2. I found cTAKES GUI for I2B2 and installed it. While trying to read a sample clinical note, though seemingly the pipelines run, I don’t see any useful output in the “Results” section of the GUI. I have included a screenshot below. The “Results” page says language: “x-unspecified”. Not sure what is going wrong. Am I doing anything wrong or missing any configurations? Also, I have included the NLP processors that am using to do this read and extract. You can see this screenshot at the bottom of this email. Hope you can help.
Many thanks,
Sekhar H.
[cid:image001.png@01D0CBA1.AF2F24E0]
[cid:image002.png@01D0CBA1.F968C2F0]
Re: cTAKES GUI for I2B2
Posted by Pei Chen <ch...@apache.org>.
Sekhar,
That application was done as a prototype/POC many years ago and hasn't
been actively maintained (hence in sandbox).
It seems from your screenshot that you have it up and running though.
Would you mind attaching the log files as well?
--Pei
On Wed, Aug 5, 2015 at 4:41 AM, Hari, Sekhar <se...@cgi.com> wrote:
> Hello Timothy -
>
> I have posted the screenshots here:
>
> https://drive.google.com/file/d/0B4sR85qs377yTThzWHM4YXlxOFE/view?usp=sharing
>
> Kindly advise as soon as possible.
>
> Many thanks,
> Sekhar H.
>
> -----Original Message-----
> From: Miller, Timothy [mailto:Timothy.Miller@childrens.harvard.edu]
> Sent: Tuesday, August 04, 2015 4:14 PM
> To: dev@ctakes.apache.org
> Subject: RE: cTAKES GUI for I2B2
>
> Can you post the screenshot somewhere it might be linked to? I don't know if we can post image attachments to the dev list.
> Thanks
> Tim
>
> ________________________________
> From: Hari, Sekhar [sekhar.hari@cgi.com]
> Sent: Monday, August 03, 2015 10:35 PM
> To: chenpei@apache.org; dev@ctakes.apache.org; user@ctakes.apache.org
> Subject: RE: cTAKES GUI for I2B2
>
> Hello there -
>
> Please, can somebody advise me on my question below?
>
> Thanks,
> Sekhar H.
> ________________________________
> From: Hari, Sekhar
> Sent: 31 July 2015 15:02
> To: chenpei@apache.org
> Subject: cTAKES GUI for I2B2
>
> Hello Pei -
>
> Can you please assist me. I am doing a few experiments using I2B2. There is a requirement for me to use cTAKES for reading clinical notes and to extract the key terminologies from the notes so it can be inserted into I2B2. I found cTAKES GUI for I2B2 and installed it. While trying to read a sample clinical note, though seemingly the pipelines run, I don't see any useful output in the "Results" section of the GUI. I have included a screenshot below. The "Results" page says language: "x-unspecified". Not sure what is going wrong. Am I doing anything wrong or missing any configurations? Also, I have included the NLP processors that am using to do this read and extract. You can see this screenshot at the bottom of this email. Hope you can help.
>
> Many thanks,
> Sekhar H.
>
>
>
>
Re: cTAKES GUI for I2B2
Posted by Pei Chen <ch...@apache.org>.
Sekhar,
That application was done as a prototype/POC many years ago and hasn't
been actively maintained (hence in sandbox).
It seems from your screenshot that you have it up and running though.
Would you mind attaching the log files as well?
--Pei
On Wed, Aug 5, 2015 at 4:41 AM, Hari, Sekhar <se...@cgi.com> wrote:
> Hello Timothy -
>
> I have posted the screenshots here:
>
> https://drive.google.com/file/d/0B4sR85qs377yTThzWHM4YXlxOFE/view?usp=sharing
>
> Kindly advise as soon as possible.
>
> Many thanks,
> Sekhar H.
>
> -----Original Message-----
> From: Miller, Timothy [mailto:Timothy.Miller@childrens.harvard.edu]
> Sent: Tuesday, August 04, 2015 4:14 PM
> To: dev@ctakes.apache.org
> Subject: RE: cTAKES GUI for I2B2
>
> Can you post the screenshot somewhere it might be linked to? I don't know if we can post image attachments to the dev list.
> Thanks
> Tim
>
> ________________________________
> From: Hari, Sekhar [sekhar.hari@cgi.com]
> Sent: Monday, August 03, 2015 10:35 PM
> To: chenpei@apache.org; dev@ctakes.apache.org; user@ctakes.apache.org
> Subject: RE: cTAKES GUI for I2B2
>
> Hello there -
>
> Please, can somebody advise me on my question below?
>
> Thanks,
> Sekhar H.
> ________________________________
> From: Hari, Sekhar
> Sent: 31 July 2015 15:02
> To: chenpei@apache.org
> Subject: cTAKES GUI for I2B2
>
> Hello Pei -
>
> Can you please assist me. I am doing a few experiments using I2B2. There is a requirement for me to use cTAKES for reading clinical notes and to extract the key terminologies from the notes so it can be inserted into I2B2. I found cTAKES GUI for I2B2 and installed it. While trying to read a sample clinical note, though seemingly the pipelines run, I don't see any useful output in the "Results" section of the GUI. I have included a screenshot below. The "Results" page says language: "x-unspecified". Not sure what is going wrong. Am I doing anything wrong or missing any configurations? Also, I have included the NLP processors that am using to do this read and extract. You can see this screenshot at the bottom of this email. Hope you can help.
>
> Many thanks,
> Sekhar H.
>
>
>
>
RE: cTAKES GUI for I2B2
Posted by "Hari, Sekhar" <se...@cgi.com>.
Hello Timothy -
I have posted the screenshots here:
https://drive.google.com/file/d/0B4sR85qs377yTThzWHM4YXlxOFE/view?usp=sharing
Kindly advise as soon as possible.
Many thanks,
Sekhar H.
-----Original Message-----
From: Miller, Timothy [mailto:Timothy.Miller@childrens.harvard.edu]
Sent: Tuesday, August 04, 2015 4:14 PM
To: dev@ctakes.apache.org
Subject: RE: cTAKES GUI for I2B2
Can you post the screenshot somewhere it might be linked to? I don't know if we can post image attachments to the dev list.
Thanks
Tim
________________________________
From: Hari, Sekhar [sekhar.hari@cgi.com]
Sent: Monday, August 03, 2015 10:35 PM
To: chenpei@apache.org; dev@ctakes.apache.org; user@ctakes.apache.org
Subject: RE: cTAKES GUI for I2B2
Hello there -
Please, can somebody advise me on my question below?
Thanks,
Sekhar H.
________________________________
From: Hari, Sekhar
Sent: 31 July 2015 15:02
To: chenpei@apache.org
Subject: cTAKES GUI for I2B2
Hello Pei -
Can you please assist me. I am doing a few experiments using I2B2. There is a requirement for me to use cTAKES for reading clinical notes and to extract the key terminologies from the notes so it can be inserted into I2B2. I found cTAKES GUI for I2B2 and installed it. While trying to read a sample clinical note, though seemingly the pipelines run, I don't see any useful output in the "Results" section of the GUI. I have included a screenshot below. The "Results" page says language: "x-unspecified". Not sure what is going wrong. Am I doing anything wrong or missing any configurations? Also, I have included the NLP processors that am using to do this read and extract. You can see this screenshot at the bottom of this email. Hope you can help.
Many thanks,
Sekhar H.
RE: cTAKES GUI for I2B2
Posted by "Hari, Sekhar" <se...@cgi.com>.
Hello Timothy -
I have posted the screenshots here:
https://drive.google.com/file/d/0B4sR85qs377yTThzWHM4YXlxOFE/view?usp=sharing
Kindly advise as soon as possible.
Many thanks,
Sekhar H.
-----Original Message-----
From: Miller, Timothy [mailto:Timothy.Miller@childrens.harvard.edu]
Sent: Tuesday, August 04, 2015 4:14 PM
To: dev@ctakes.apache.org
Subject: RE: cTAKES GUI for I2B2
Can you post the screenshot somewhere it might be linked to? I don't know if we can post image attachments to the dev list.
Thanks
Tim
________________________________
From: Hari, Sekhar [sekhar.hari@cgi.com]
Sent: Monday, August 03, 2015 10:35 PM
To: chenpei@apache.org; dev@ctakes.apache.org; user@ctakes.apache.org
Subject: RE: cTAKES GUI for I2B2
Hello there -
Please, can somebody advise me on my question below?
Thanks,
Sekhar H.
________________________________
From: Hari, Sekhar
Sent: 31 July 2015 15:02
To: chenpei@apache.org
Subject: cTAKES GUI for I2B2
Hello Pei -
Can you please assist me. I am doing a few experiments using I2B2. There is a requirement for me to use cTAKES for reading clinical notes and to extract the key terminologies from the notes so it can be inserted into I2B2. I found cTAKES GUI for I2B2 and installed it. While trying to read a sample clinical note, though seemingly the pipelines run, I don't see any useful output in the "Results" section of the GUI. I have included a screenshot below. The "Results" page says language: "x-unspecified". Not sure what is going wrong. Am I doing anything wrong or missing any configurations? Also, I have included the NLP processors that am using to do this read and extract. You can see this screenshot at the bottom of this email. Hope you can help.
Many thanks,
Sekhar H.
RE: cTAKES GUI for I2B2
Posted by "Miller, Timothy" <Ti...@childrens.harvard.edu>.
Can you post the screenshot somewhere it might be linked to? I don't know if we can post image attachments to the dev list.
Thanks
Tim
________________________________
From: Hari, Sekhar [sekhar.hari@cgi.com]
Sent: Monday, August 03, 2015 10:35 PM
To: chenpei@apache.org; dev@ctakes.apache.org; user@ctakes.apache.org
Subject: RE: cTAKES GUI for I2B2
Hello there -
Please, can somebody advise me on my question below?
Thanks,
Sekhar H.
________________________________
From: Hari, Sekhar
Sent: 31 July 2015 15:02
To: chenpei@apache.org
Subject: cTAKES GUI for I2B2
Hello Pei –
Can you please assist me. I am doing a few experiments using I2B2. There is a requirement for me to use cTAKES for reading clinical notes and to extract the key terminologies from the notes so it can be inserted into I2B2. I found cTAKES GUI for I2B2 and installed it. While trying to read a sample clinical note, though seemingly the pipelines run, I don’t see any useful output in the “Results” section of the GUI. I have included a screenshot below. The “Results” page says language: “x-unspecified”. Not sure what is going wrong. Am I doing anything wrong or missing any configurations? Also, I have included the NLP processors that am using to do this read and extract. You can see this screenshot at the bottom of this email. Hope you can help.
Many thanks,
Sekhar H.