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Posted to github@beam.apache.org by GitBox <gi...@apache.org> on 2020/12/04 19:02:40 UTC

[GitHub] [beam] robertwb opened a new pull request #13489: Workaround for incremental in read_json.

robertwb opened a new pull request #13489:
URL: https://github.com/apache/beam/pull/13489


   
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[GitHub] [beam] TheNeuralBit commented on a change in pull request #13489: Workaround for incremental in read_json.

Posted by GitBox <gi...@apache.org>.
TheNeuralBit commented on a change in pull request #13489:
URL: https://github.com/apache/beam/pull/13489#discussion_r541397740



##########
File path: sdks/python/apache_beam/dataframe/io.py
##########
@@ -59,6 +59,11 @@ def read_fwf(path, *args, **kwargs):
 
 
 def read_json(path, *args, **kwargs):
+  if 'nrows' in kwargs:
+    raise NotImplementedError('nrows not yet supported')
+  elif kwargs.get('lines', False):
+    # Work around https://github.com/pandas-dev/pandas/issues/34548.
+    kwargs = dict(kwargs, nrows=1 << 63)

Review comment:
       The motivation isn't clear to me from that issue, could you clarify?




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[GitHub] [beam] TheNeuralBit merged pull request #13489: Workaround for incremental in read_json.

Posted by GitBox <gi...@apache.org>.
TheNeuralBit merged pull request #13489:
URL: https://github.com/apache/beam/pull/13489


   


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[GitHub] [beam] TheNeuralBit commented on a change in pull request #13489: Workaround for incremental in read_json.

Posted by GitBox <gi...@apache.org>.
TheNeuralBit commented on a change in pull request #13489:
URL: https://github.com/apache/beam/pull/13489#discussion_r541462698



##########
File path: sdks/python/apache_beam/dataframe/io.py
##########
@@ -59,6 +59,11 @@ def read_fwf(path, *args, **kwargs):
 
 
 def read_json(path, *args, **kwargs):
+  if 'nrows' in kwargs:
+    raise NotImplementedError('nrows not yet supported')
+  elif kwargs.get('lines', False):
+    # Work around https://github.com/pandas-dev/pandas/issues/34548.
+    kwargs = dict(kwargs, nrows=1 << 63)

Review comment:
       Ah ok, thanks




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[GitHub] [beam] robertwb commented on a change in pull request #13489: Workaround for incremental in read_json.

Posted by GitBox <gi...@apache.org>.
robertwb commented on a change in pull request #13489:
URL: https://github.com/apache/beam/pull/13489#discussion_r541425726



##########
File path: sdks/python/apache_beam/dataframe/io.py
##########
@@ -59,6 +59,11 @@ def read_fwf(path, *args, **kwargs):
 
 
 def read_json(path, *args, **kwargs):
+  if 'nrows' in kwargs:
+    raise NotImplementedError('nrows not yet supported')
+  elif kwargs.get('lines', False):
+    # Work around https://github.com/pandas-dev/pandas/issues/34548.
+    kwargs = dict(kwargs, nrows=1 << 63)

Review comment:
       Due to a bug in the code, the entire file is read into memory all at once unless both chunksize *and* nrows are set. 




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