svn commit: r1485206 - in /ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models: sharpPolarityFrags.txt sharpUncertaintyFrags.txt

[tm...@apache.org]

Author: tmill
Date: Wed May 22 13:29:57 2013
New Revision: 1485206

URL: http://svn.apache.org/r1485206
Log:
addresses ctakes-154: tree fragment features trained on sharp parses for polarity and uncertainty.

Added:
    ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpPolarityFrags.txt   (with props)
    ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpUncertaintyFrags.txt   (with props)

Added: ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpPolarityFrags.txt
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpPolarityFrags.txt?rev=1485206&view=auto
==============================================================================
--- ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpPolarityFrags.txt (added)
+++ ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpPolarityFrags.txt Wed May 22 13:29:57 2013
@@ -0,0 +1,545 @@
+(NML(NN)(CC)(NN))
+(NML(JJ)(JJ))
+(NML(CONCEPT))
+(NML(CONCEPT(NN)))
+(NML(NNS)(,)(NN))
+(NML(FW)(FW))
+(NML(FW(in))(FW))
+(NML(FW)(FW(situ)))
+(NML(NN))
+(NML(JJ)(NN))
+(NML(JJ(angiolymphatic))(NN))
+(NML(JJ)(NN(space)))
+(NML(JJ)(NNS))
+(NML(NN)(,)(NN)(CC)(NN))
+(:(-lrb-))
+(MD(semclass_uncertainty))
+(MD(semclass_hypothetical_cue_list))
+(PP(CONCEPT))
+(PP(CONCEPT(IN)))
+(PP(SYM)(NP))
+(CC(semclass_uncertainty))
+(CC(but))
+(CC(both))
+(CONCEPT(NML))
+(CONCEPT(JJ))
+(CONCEPT(JJ(negative)))
+(CONCEPT(JJ(suspicious)))
+(CONCEPT(JJ(significant)))
+(CONCEPT(IN))
+(CONCEPT(IN(without)))
+(CONCEPT(ADJP))
+(CONCEPT(ADJP(JJ)))
+(CONCEPT(NN))
+(CONCEPT(NN(iv)))
+(CONCEPT(NN(hepatosplenomegaly)))
+(CONCEPT(NN(breast)))
+(CONCEPT(NN(muscle)))
+(CONCEPT(NN(murmur)))
+(CONCEPT(NN(stenosis)))
+(CONCEPT(NN(skin)))
+(CONCEPT(NN(blood)))
+(CONCEPT(NN(gallop)))
+(CONCEPT(NN(tobacco)))
+(CONCEPT(NN(edema)))
+(CONCEPT(NN(chest)))
+(CONCEPT(JJ)(NNS))
+(CONCEPT(CD))
+(CONCEPT(NN)(HYPH)(NN))
+(CONCEPT(JJ)(NN)(NN))
+(CONCEPT(VBZ))
+(CONCEPT(INTJ))
+(CONCEPT(INTJ(UH)))
+(CONCEPT(DT))
+(CONCEPT(DT(no)))
+(CONCEPT(DT(both)))
+(CONCEPT(FRAG))
+(CONCEPT(VBN))
+(CONCEPT(RB)(ADVP)(VP))
+(CONCEPT(JJ)(JJ)(NN))
+(CONCEPT(VP))
+(CONCEPT(S))
+(CONCEPT(S(NP)(ADJP)))
+(CONCEPT(S(ADJP)))
+(CONCEPT(NP))
+(CONCEPT(NP(NP)(CC)(NP)))
+(CONCEPT(NP(NML)(NNS)))
+(CONCEPT(NP(NNS)))
+(CONCEPT(SYM))
+(ADJP(JJ)(PP))
+(ADJP(JJ(semclass_uncertainty))(PP))
+(ADJP(JJ(negative))(PP))
+(ADJP(JJ)(PP(IN)(NP)))
+(ADJP(CONCEPT))
+(ADJP(CONCEPT(JJ)))
+(ADJP(CONCEPT(RB)))
+(ADJP(JJ))
+(ADJP(JJ(occluded)))
+(ADJP(JJ(negative)))
+(ADJP(JJ(patent)))
+(ADJP(JJ(absent)))
+(ADJP(RB)(VBN))
+(ADJP(ADJP)(CC)(ADJP))
+(NNP(md))
+(NN(tongue))
+(NN(thyroid))
+(NN(hematuria))
+(NN(skin))
+(NN(anxiety))
+(NN(urgency))
+(NN(asthma))
+(NN(re-excision))
+(NN(pr))
+(NN(er))
+(NN(component))
+(NN(level))
+(NN(back))
+(NN(sentinel))
+(NN(infection))
+(NN(invasion))
+(NN(aneurysm))
+(NN(liver))
+(NN(panel))
+(NN(wheezing))
+(NN(status))
+(NN(hesitancy))
+(NN(cbc))
+(NN(semclass_evidence))
+(NN(patient))
+(NN(anemia))
+(NN(diverticulosis))
+(NN(constipation))
+(NN(relationship))
+(NN(edema))
+(NN(blood))
+(NN(muscle))
+(NN(angiogram))
+(NN(lymph))
+(NN(cta))
+(NN(itching))
+(NN(procedure))
+(NN(menopause))
+(NN(gallop))
+(NN(needle))
+(NN(abdomen))
+(NN(foot))
+(NN(nocturia))
+(NN(oophrectomy))
+(NN(health))
+(NN(catheter))
+(NN(origin))
+(NN(rhythm))
+(NN(core))
+(NN(cerebral))
+(NN(hormone))
+(NN(graft))
+(NN(pain))
+(NN(aorta))
+(NN(diarrhea))
+(NN(frequency))
+(NN(polyuria))
+(NN(therapy))
+(NN(gadolinium))
+(NN(rt))
+(NN(dcis))
+(NN(murmur))
+(NN(dysuria))
+(NN(mastectomy))
+(NN(in))
+(NN(use))
+(NN(mucosa))
+(NN(alopecia))
+(NN(bone))
+(NN(headache))
+(NN(sfa))
+(NN(pt))
+(NN(organomegaly))
+(NN(lump))
+(NN(artery))
+(NN(iv))
+(NN(node))
+(NN(lesion))
+(NN(vessel))
+(NN(cough))
+(NN(pe))
+(NN(palpation))
+(NN(right))
+(NN(pseudoaneurysm))
+(NN(hysterectomy))
+(NN(diabetes))
+(NN(radiotherapy))
+(NN(joint))
+(NN(none))
+(NN(ivc))
+(NN(uti))
+(NN(semclass_change_state))
+(NN(stenosis))
+(NN(breast))
+(NN(etoh))
+(NN(abscess))
+(NN(diarrrea))
+(NN(mg))
+(NN(mra))
+(NN(popliteal))
+(NN(contrast))
+(NN(weakness))
+(NN(shortness))
+(NN(tamoxifen))
+(NN(alcohol))
+(NN(week))
+(NN(dissection))
+(NN(tobacco))
+(NN(fluid))
+(NN(rest))
+(NN(pelvis))
+(NN(oropharynx))
+(NN(vomiting))
+(NN(mri))
+(NN(ct))
+(NN(reconstruction))
+(NN(exertion))
+(NN(neurologic))
+(NN(menarche))
+(NN(ln))
+(NN(fever))
+(NN(dyspnea))
+(NN(breath))
+(NN(exudate))
+(NN(family))
+(NN(retraction))
+(NN(carcinoma))
+(VBN(noted))
+(VBN(seen))
+(DT(an))
+(DT(the))
+(DT(a))
+(DT(both))
+(DT(any))
+(DT(semclass_def_determiner))
+(DT(4.))
+(DT(no))
+(PRP(we))
+(PRP(she))
+(PRP(it))
+(FRAG(NP)(:)(NP)(.))
+(FRAG(CONCEPT)(,))
+(FRAG(CONCEPT)(,(,)))
+(FRAG(NP)(:)(CONCEPT)(.))
+(FRAG(NP)(:(:))(CONCEPT(S))(.))
+(FRAG(NP)(:)(CONCEPT(S))(.(.)))
+(FRAG(NP)(:))
+(FRAG(NP(DT)(CONCEPT))(:))
+(FRAG(NP(NP)(PP))(:))
+(FRAG(CONCEPT))
+(FRAG(NP)(:)(NP)(FRAG))
+(FRAG(NP)(:)(PP))
+(FRAG(NP)(:)(NP))
+(FRAG(NP(NN))(:)(NP(NP)))
+(FRAG(NP(JJ)(NN))(:)(NP(NP)(,)))
+(FRAG(NP(JJ)(NN))(:)(NP(NP)))
+(FRAG(NP)(:)(CONCEPT))
+(FRAG(NP(NP)(PP))(:(:))(CONCEPT))
+(FRAG(NP)(:(:))(CONCEPT(INTJ)))
+(FRAG(NP(NP)(PP))(:)(CONCEPT(INTJ)))
+(FRAG(NP))
+(FRAG(NP(CONCEPT)))
+(FRAG(NP(NP)(PP)))
+(FRAG(NP(DT)(NML)))
+(FRAG(NP)(FRAG))
+(FRAG(NP(DT)(NML))(FRAG))
+(FRAG(NP)(FRAG(CONCEPT)(:)))
+(FRAG(S)(,)(NP)(,))
+(FRAG(NP)(:)(S))
+(FRAG(NP)(,)(S)(,)(NP))
+(FRAG(CONCEPT)(:))
+(VB(need))
+(VB(include))
+(VB(do))
+(VB(semclass_evidence))
+(VBD(semclass_copular))
+(VBD(did))
+(VBD(semclass_deny))
+(VBD(semclass_experience))
+(,(,))
+(NP(CONCEPT)(.))
+(NP(NN)(CC)(NN))
+(NP(DT)(JJ)(JJ)(CONCEPT))
+(NP(NML))
+(NP(JJ)(JJ)(CONCEPT))
+(NP(CONCEPT))
+(NP(CONCEPT(NML)))
+(NP(CONCEPT(JJ)))
+(NP(CONCEPT(DT)))
+(NP(CONCEPT(NNS)))
+(NP(ADJP))
+(NP(NP)(,)(NP)(,)(NP)(,)(NP)(,)(NP))
+(NP(NNP))
+(NP(NN)(JJ)(NNS))
+(NP(NP)(PP))
+(NP(NP(DT)(NN)(NN))(PP))
+(NP(NP(JJ)(NML))(PP))
+(NP(NP(NP)(PP))(PP))
+(NP(NP(NNS))(PP))
+(NP(NP(NN))(PP))
+(NP(NP)(,)(NP)(,)(NP))
+(NP(NP)(,)(NP)(,)(CONCEPT)(,))
+(NP(DT)(NML)(CONCEPT))
+(NP(JJ)(CONCEPT))
+(NP(JJ(mild))(CONCEPT))
+(NP(JJ(significant))(CONCEPT))
+(NP(DT))
+(NP(DT(semclass_def_determiner)))
+(NP(PRP))
+(NP(PRP(she)))
+(NP(PRP(it)))
+(NP(NML)(NN))
+(NP(NML(JJ)(NN))(NN))
+(NP(NML)(NN(invasion)))
+(NP(CD)(CONCEPT))
+(NP(DT)(JJ)(NNS))
+(NP(NP)(,)(NP))
+(NP(NN)(CONCEPT))
+(NP(NN)(NN)(NNS))
+(NP(NN)(POS))
+(NP(NN(uti))(POS))
+(NP(NP)(PP)(:))
+(NP(JJ)(NN)(CONCEPT))
+(NP(NP))
+(NP(NP(JJ)(CONCEPT)))
+(NP(NP(DT)(JJ)(NN)))
+(NP(NP(NP)(PP)))
+(NP(NP(DT)(JJ)(CONCEPT)))
+(NP(NP(NP)))
+(NP(NP(CONCEPT)))
+(NP(NNP)(NNP))
+(NP(DT)(NNS))
+(NP(NN)(CC)(CONCEPT))
+(NP(NP)(,)(NP)(,)(NP)(,)(CONCEPT)(,))
+(NP(CONCEPT)(NN))
+(NP(NN)(NN))
+(NP(NN(sentinel))(NN))
+(NP(NN(tobacco))(NN))
+(NP(NN)(NN(use)))
+(NP(NN)(NN(ln)))
+(NP(NN)(NNS))
+(NP(NN(bowel))(NNS))
+(NP(NN)(NNS(habits)))
+(NP(ADJP)(CONCEPT))
+(NP(DT)(CONCEPT))
+(NP(DT(an))(CONCEPT))
+(NP(DT(the))(CONCEPT))
+(NP(DT(no))(CONCEPT))
+(NP(DT)(CONCEPT(NN)))
+(NP(DT)(CONCEPT(JJ)(NN)))
+(NP(DT)(CONCEPT(JJ)(JJ)(NN)))
+(NP(DT)(CONCEPT(JJ)))
+(NP(DT)(CONCEPT(NNS)))
+(NP(NN)(NN)(NN))
+(NP(ADJP)(NNS))
+(NP(JJ)(NML))
+(NP(JJ(excessive))(NML))
+(NP(JJ)(NML(NN)(CC)(NN)))
+(NP(DT)(JJ)(NML))
+(NP(JJ)(JJ)(JJ)(NN))
+(NP(CONCEPT)(SYM))
+(NP(CD))
+(NP(CD)(NNS))
+(NP(NP)(PP)(.))
+(NP(NP)(PP(IN)(NP))(.(.)))
+(NP(CONCEPT)(:))
+(NP(DT)(NML)(NN))
+(NP(NML)(JJ)(NNS))
+(NP(DT)(NML))
+(NP(DT(no))(NML))
+(NP(DT(the))(NML))
+(NP(DT)(NML(CONCEPT)))
+(NP(DT)(NML(NNS)(,)(NN)))
+(NP(JJ)(JJ)(NN))
+(NP(CD)(JJ)(NN))
+(NP(DT)(NN)(JJ))
+(NP(NP)(CONCEPT))
+(NP(JJ)(CONCEPT)(.))
+(NP(NP)(,)(NP)(,)(NP)(,)(NP)(,)(CONCEPT)(,))
+(NP(NN)(CC)(NNS))
+(NP(ADJP)(NN))
+(NP(NN)(SYM)(NN))
+(SYM(*))
+(SYM(/))
+(SYM(x))
+(SYM(-))
+(INTJ(UH))
+(INTJ(UH(no)))
+(JJ(main))
+(JJ(absent))
+(JJ(oral))
+(JJ(scattered))
+(JJ(supraclavicular))
+(JJ(pelvic))
+(JJ(hormonal))
+(JJ(cognitive))
+(JJ(large))
+(JJ(suspicious))
+(JJ(moderate))
+(JJ(excessive))
+(JJ(interested))
+(JJ(aortoiliac))
+(JJ(pulmonary))
+(JJ(low))
+(JJ(cervical))
+(JJ(semclass_certainty))
+(JJ(calcified))
+(JJ(right))
+(JJ(gi))
+(JJ(-lrb-))
+(JJ(occluded))
+(JJ(surgical))
+(JJ(negative))
+(JJ(single))
+(JJ(extensive))
+(JJ(proximal))
+(JJ(axillary))
+(JJ(popliteal))
+(JJ(semclass_uncertainty))
+(JJ(current))
+(JJ(thoracic))
+(JJ(prior))
+(JJ(enlarged))
+(JJ(abdominal))
+(JJ(celiac))
+(JJ(ovarian))
+(JJ(musculoskeletal))
+(JJ(diagnostic))
+(JJ(intraductal))
+(JJ(alert))
+(JJ(vaginal))
+(JJ(mild))
+(JJ(patent))
+(JJ(good))
+(JJ(ductal))
+(JJ(lymphatic))
+(JJ(angiolymphatic))
+(JJ(social))
+(JJ(definitive))
+(JJ(normal))
+(JJ(visual))
+(JJ(bilateral))
+(JJ(present))
+(JJ(new))
+(JJ(mid))
+(NNS(seizures))
+(NNS(groups))
+(NNS(polyps))
+(NNS(disorders))
+(NNS(meds))
+(NNS(rales))
+(NNS(images))
+(NNS(calcifications))
+(NNS(systems))
+(NNS(semclass_evidence))
+(NNS(eyes))
+(NNS(areas))
+(NNS(lungs))
+(NNS(lips))
+(NNS(nodes))
+(NNS(chills))
+(NNS(antibodies))
+(NNS(semclass_change_state))
+(NNS(kg))
+(NNS(topics))
+(NNS(foci))
+(NNS(breasts))
+(NNS(rashes))
+(NNS(habits))
+(NNS(abnormalities))
+(NNS(exposures))
+(NNS(risks))
+(NNS(masses))
+(NNS(supplies))
+(NNS(hazards))
+(NNS(extremeties))
+(NNS(clusters))
+(IN(semclass_hypothetical_cue_list))
+(IN(in))
+(IN(than))
+(IN(within))
+(IN(for))
+(IN(to))
+(IN(after))
+(IN(without))
+(IN(-lrb-))
+(FW(in))
+(FW(situ))
+(UCP(ADJP)(CC)(PP))
+(UCP(NN)(CC)(JJ))
+(VBZ(semclass_copular))
+(VBZ(semclass_deny))
+(VBZ(semclass_experience))
+(VBZ(extends))
+(CD(3))
+(CD(4))
+(CD(2))
+(CD(two))
+(UH(no))
+(RB(therefore))
+(RB(severely))
+(RB(again))
+(RB(all))
+(RB(semclass_uncertainty))
+(RB(never))
+(RB(proximally))
+(RB(moderately))
+(RB(however))
+(RB(not))
+(PRP$(semclass_def_determiner))
+(VBG(pursuing))
+(VBG(taking))
+(VP(VB)(VP))
+(VP(VB)(VP(VBN)))
+(VP(VBP)(ADJP)(PP))
+(VP(VBN)(CONCEPT))
+(VP(MD)(VP))
+(VP(VB)(RB)(VP))
+(VP(VBD)(VP))
+(VP(VBP)(CONCEPT))
+(VP(VBZ)(PP))
+(VP(VBN)(PP))
+(VP(VBN)(PP(IN)(CONCEPT)))
+(VP(VB)(ADJP))
+(VP(VBG)(ADVP)(PP))
+(VP(VBZ)(ADJP))
+(VP(VBZ(semclass_copular))(ADJP))
+(VP(VBZ)(ADJP(JJ)))
+(VP(VBZ)(ADJP(ADJP)(CC)(ADJP)))
+(VP(VP))
+(VP(VBD))
+(VP(VB)(NP))
+(VP(VB(include))(NP))
+(VP(VB(semclass_evidence))(NP))
+(VP(VP)(CC)(VP))
+(VP(VBZ)(NP))
+(VP(VBZ(semclass_experience))(NP))
+(S(NP)(ADJP))
+(S(NP(NN))(ADJP))
+(S(NP)(ADJP(JJ)))
+(S(NP)(VP)(.))
+(S(NP)(UCP))
+(S(NP)(ADJP)(PP))
+(S(NP)(VP))
+(S(NP(DT)(NNS))(VP))
+(S(NP(NNS))(VP))
+(S(NP)(VP(VBD)(CONCEPT)))
+(S(NP)(VP(VBD)(PP)(PP)))
+(S(ADJP))
+(S(ADJP(JJ)(PP)))
+(S(ADJP(JJ)))
+(S(NP)(CONCEPT))
+(S(VP))
+(S(VP(VB)(RB)(VP)))
+(S(VP(VBZ)(ADJP)))
+(S(NP)(PP))
+(S(NP)(PP(IN)(NP)))
+(S(NP))
+(S(NP(NP)))
+(S(NP(DT)(CONCEPT)))
+(S(NP(DT)(NML)))
+(VBP(semclass_copular))

Propchange: ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpPolarityFrags.txt
------------------------------------------------------------------------------
    svn:mime-type = text/plain

Added: ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpUncertaintyFrags.txt
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpUncertaintyFrags.txt?rev=1485206&view=auto
==============================================================================
--- ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpUncertaintyFrags.txt (added)
+++ ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpUncertaintyFrags.txt Wed May 22 13:29:57 2013
@@ -0,0 +1,1263 @@
+(WHNP(WDT))
+(NML(NN)(CC)(CONCEPT))
+(NML(NML)(CC)(NML))
+(NML(NN)(NN))
+(NML(NN(kidney))(NN))
+(NML(NN)(NN(stone)))
+(NML(CONCEPT))
+(NML(CONCEPT(NN)))
+(NML(JJ)(JJ)(NN))
+(NML(CD)(NN))
+(NML(CD(1.5))(NN))
+(NML(CD)(NN(cm)))
+(NML(NN)(CC)(NN))
+(NML(JJ)(NNS))
+(NML(JJ(calcified))(NNS))
+(NML(JJ)(NNS(regions)))
+(NML(NN)(HYPH)(NN))
+(:(-rrb-))
+(:(:))
+(MD(semclass_uncertainty))
+(MD(will))
+(MD(semclass_hypothetical_cue_list))
+(PP(VBN)(NP))
+(PP(IN)(CC)(NP))
+(PP(IN)(CC(or))(NP(NN)))
+(PP(IN(w))(CC)(NP(NN)))
+(PP(IN))
+(PP(IN)(IN)(NP))
+(PP(IN(due))(IN(to))(NP))
+(PP(ADVP)(IN)(NP))
+(PP(CONCEPT))
+(PP(CONCEPT(IN)))
+(PP(SYM)(NP))
+(PP(SYM(/))(NP))
+(PP(IN)(HYPH)(CONCEPT))
+(PP(IN)(ADJP))
+(PP(IN)(CONCEPT))
+(PP(IN(for))(CONCEPT))
+(PP(IN(to))(CONCEPT))
+(PP(IN(with))(CONCEPT))
+(PP(IN(in))(CONCEPT))
+(PP(IN(by))(CONCEPT))
+(PP(IN(of))(CONCEPT))
+(PP(IN)(CONCEPT(NP)))
+(PP(VBG)(NP))
+(PP(ADVP)(IN)(IN)(NP))
+(PP(ADVP)(IN(due))(IN(to))(NP))
+(PP(IN)(CC)(IN)(NP))
+(PP(IN)(NP))
+(PP(IN(at))(NP))
+(PP(IN(to))(NP))
+(PP(IN(with))(NP))
+(PP(IN(via))(NP))
+(PP(IN(within))(NP))
+(PP(IN(for))(NP))
+(PP(IN(p))(NP))
+(PP(IN(without))(NP))
+(PP(IN)(NP(NN)(CC)(CONCEPT)))
+(PP(IN)(NP(NN)(CC)(NN)))
+(PP(IN)(NP(NN)(NN)))
+(PP(IN)(NP(DT)(CONCEPT)))
+(PP(IN)(NP(CONCEPT)))
+(PP(IN)(NP(JJ)(JJ)(NN)))
+(PP(IN)(NP(DT)(NN)))
+(PP(IN)(NP(DT)(JJ)(JJ)(NN)))
+(PP(IN)(NP(NN)))
+(PP(IN)(NP(DT)(JJ)(CONCEPT)))
+(PP(IN)(NP(DT)(NN)(NNS)))
+(PP(IN)(NP(JJ)(NNS)))
+(PP(IN)(NP(NP)(PP)))
+(PP(IN)(NP(JJ)(NN)(NN)))
+(PP(IN)(NP(JJ)(CONCEPT)))
+(PP(IN)(NP(DT)(JJ)(NN)(NN)))
+(PP(IN)(NP(NP)(SBAR)))
+(PP(IN)(NP(NNS)))
+(PP(IN)(NP(DT)(NNS)))
+(PP(IN)(NP(NP)(,)(NP)))
+(PP(IN)(NP(NN)(CONCEPT)))
+(PP(IN)(NP(PRP$)(CONCEPT)))
+(PP(IN)(NP(NP)))
+(PP(IN)(NP(JJ)(NN)))
+(PP(IN)(NP(NP)(CC)(NP)))
+(PP(IN)(NP(NP)(CC)(CONCEPT)))
+(PP(IN)(NP(DT)(JJ)(JJ)(JJ)(NN)))
+(PP(IN)(S))
+(CC(semclass_uncertainty))
+(CC(or))
+(CC(and))
+(CC(but))
+(CONCEPT(NML))
+(CONCEPT(NML(JJ)(NN)))
+(CONCEPT(CD)(HYPH)(CD))
+(CONCEPT(QP))
+(CONCEPT(PP))
+(CONCEPT(PP(IN)(NP)))
+(CONCEPT(CC))
+(CONCEPT(CC(semclass_uncertainty)))
+(CONCEPT(RB)(VP))
+(CONCEPT(RB(not))(VP))
+(CONCEPT(RB)(VP(VBN)))
+(CONCEPT(ADJP))
+(CONCEPT(ADJP(JJ)(PP)))
+(CONCEPT(ADJP(JJ)))
+(CONCEPT(NNP))
+(CONCEPT(CD)(NN))
+(CONCEPT(NP)(NP))
+(CONCEPT(NN))
+(CONCEPT(NN(stenosis)))
+(CONCEPT(NN(breast)))
+(CONCEPT(NN(claudication)))
+(CONCEPT(NN(mastectomy)))
+(CONCEPT(NN(blood)))
+(CONCEPT(NN(patient)))
+(CONCEPT(NN(occlusion)))
+(CONCEPT(NN(atherosclerosis)))
+(CONCEPT(NN(disease)))
+(CONCEPT(NN(mass)))
+(CONCEPT(VBN))
+(CONCEPT(JJ)(NN)(NN))
+(CONCEPT(JJ)(NN(space))(NN(invasion)))
+(CONCEPT(DT))
+(CONCEPT(DT(no)))
+(CONCEPT(FRAG))
+(CONCEPT(VB))
+(CONCEPT(VB(evaluate)))
+(CONCEPT(ADVP))
+(CONCEPT(NN)(NN))
+(CONCEPT(NN(breast))(NN))
+(CONCEPT(JJ)(NN))
+(CONCEPT(NP))
+(CONCEPT(NP(NP)(PP)(.)))
+(CONCEPT(NP(VBG)(NN)))
+(CONCEPT(NP(NNS)))
+(CONCEPT(NP(NN)(NNS)))
+(CONCEPT(NP(NP)(SYM)(NP)))
+(CONCEPT(NP(JJ)(JJ)(NN)))
+(CONCEPT(NP(CD)(NNS)))
+(CONCEPT(NP(ADJP)(NN)))
+(CONCEPT(NP(NP)(NP)))
+(CONCEPT(NP(NP)(PP)))
+(CONCEPT(NP(JJ)))
+(CONCEPT(NP(NML)(NN)))
+(CONCEPT(NP(NP)(HYPH)(PP)))
+(CONCEPT(NP(JJ)(NN)(NN)))
+(CONCEPT(NP(NN)))
+(CONCEPT(SYM))
+(CONCEPT(JJ))
+(CONCEPT(JJ(left)))
+(CONCEPT(JJ(semclass_uncertainty)))
+(CONCEPT(JJ(suspicious)))
+(CONCEPT(JJ(significant)))
+(CONCEPT(JJ(patent)))
+(CONCEPT(JJ(right)))
+(CONCEPT(JJ(proximal)))
+(CONCEPT(NNS))
+(CONCEPT(IN))
+(CONCEPT(NN)(NNS))
+(CONCEPT(VB)(HYPH)(PRT))
+(CONCEPT(VB(r))(HYPH(/))(PRT))
+(CONCEPT(VB)(HYPH(/))(PRT(RP)))
+(CONCEPT(VB(r))(HYPH)(PRT(RP)))
+(CONCEPT(JJ)(JJ)(NNS))
+(CONCEPT(VBZ))
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+(JJ(negative))
+(JJ(paternal))
+(JJ(superior))
+(JJ(mitotic))
+(JJ(simple))
+(JJ(inferior))
+(JJ(cystic))
+(JJ(peripheral))
+(JJ(thoracic))
+(JJ(irregular))
+(JJ(mild))
+(JJ(femoral))
+(JJ(lt))
+(JJ(lobular))
+(JJ(known))
+(JJ(related))
+(JJ(aneurysmal))
+(JJ(common))
+(JJ(arterial))
+(JJ(tibial))
+(JJ(intramammary))
+(JJ(angio))
+(JJ(patent))
+(JJ(bilateral))
+(JJ(aortic))
+(JJ(semclass_disappear))
+(JJ(fatty))
+(JJ(semclass_uncertainty))
+(JJ(mosaic))
+(JJ(ulcerated))
+(JJ(long))
+(JJ(new))
+(JJ(descending))
+(JJ(differentiated))
+(JJ(blue))
+(JJ(architectural))
+(JJ(lymphatic))
+(JJ(distal))
+(JJ(dense))
+(JJ(ischemic))
+(JJ(atheromatous))
+(JJ(ductal))
+(JJ(compatible))
+(JJ(suspicious))
+(JJ(hypogastric))
+(JJ(tight))
+(JJ(neoplastic))
+(JJ(worrisome))
+(JJ(malignant))
+(JJ(general))
+(JJ(aggressive))
+(JJ(cervical))
+(JJ(complete))
+(JJ(stable))
+(JJ(internal))
+(JJ(diffuse))
+(JJ(right))
+(JJ(calcific))
+(JJ(nuclear))
+(JJ(recent))
+(JJ(high))
+(JJ(focal))
+(JJ(luminal))
+(JJ(surgical))
+(JJ(mid))
+(JJ(stereotactic))
+(JJ(diseased))
+(JJ(cooperative))
+(JJ(circled))
+(JJ(axillary))
+(JJ(original))
+(JJ(diminutive))
+(JJ(minimal))
+(JJ(iliac))
+(JJ(previous))
+(JJ(abnormal))
+(JJ(cardiac))
+(JJ(marked))
+(JJ(alert))
+(JJ(left))
+(JJ(unchanged))
+(JJ(hepatic))
+(JJ(associated))
+(JJ(present))
+(JJ(old))
+(JJ(angiolymphatic))
+(JJ(vascular))
+(JJ(definitive))
+(JJ(pleasant))
+(JJ(several))
+(JJ(normal))
+(JJ(posterior))
+(JJ(small))
+(NNS(foci))
+(NNS(meds))
+(NNS(images))
+(NNS(calcifications))
+(NNS(complications))
+(NNS(extremities))
+(NNS(semclass_evidence))
+(NNS(mm))
+(NNS(trochanters))
+(NNS(areas))
+(NNS(cells))
+(NNS(features))
+(NNS(lungs))
+(NNS(lobes))
+(NNS(cores))
+(NNS(nodes))
+(NNS(effects))
+(NNS(lymphnodes))
+(NNS(sections))
+(NNS(semclass_change_state))
+(NNS(microcalcifications))
+(NNS(medications))
+(NNS(benefits))
+(NNS(regions))
+(NNS(limits))
+(NNS(stents))
+(NNS(breasts))
+(NNS(diseaseindications))
+(NNS(margins))
+(NNS(cysts))
+(NNS(toes))
+(NNS(outpouchings))
+(NNS(masses))
+(NNS(velocities))
+(NNS(cm))
+(NNS(veins))
+(NNS(vessels))
+(IN(at))
+(IN(p))
+(IN(on))
+(IN(wo))
+(IN(from))
+(IN(after))
+(IN(for))
+(IN(to))
+(IN(without))
+(IN(above))
+(IN(along))
+(IN(semclass_hypothetical_cue_list))
+(IN(with))
+(IN(than))
+(IN(before))
+(IN(-rrb-))
+(IN(due))
+(IN(by))
+(HYPH(/))
+(HYPH(-))
+(PRP(she))
+(PRP(i))
+(PRP(it))
+(POS('s))
+(VBZ(semclass_copular))
+(VBZ(reconstitutes))
+(VBZ(occludes))
+(VBZ(semclass_uncertainty))
+(VBZ(semclass_evidence))
+(VBZ(semclass_experience))
+(FW(in))
+(FW(situ))
+(CD(2009))
+(CD(10))
+(CD(00))
+(CD(12))
+(CD(06))
+(CD(21))
+(CD(1))
+(CD(0.5))
+(CD(23))
+(CD(20))
+(CD(29))
+(CD(00pm))
+(CD(5))
+(CD(7))
+(CD(1.5))
+(CD(6))
+(CD(19))
+(CD(three))
+(UH(please))
+(RB(at))
+(RB(diffusely))
+(RB(severely))
+(RB(about))
+(RB(hemodynamically))
+(RB(very))
+(RB(centrally))
+(RB(semclass_uncertainty))
+(RB(overall))
+(RB(distally))
+(RB(further))
+(RB(widely))
+(RB(highly))
+(RB(relatively))
+(RB(therefore))
+(RB(now))
+(RB(again))
+(RB(bilaterally))
+(RB(briefly))
+(RB(poorly))
+(RB(sometimes))
+(RB(just))
+(RB(moderately))
+(RB(completely))
+(RB(still))
+(PRP$(semclass_def_determiner))
+(VBG(healing))
+(VBG(measuring))
+(VBG(beginning))
+(VBG(containing))
+(VBG(semclass_change_state))
+(VBG(semclass_evidence))
+(VBG(semclass_disappear))
+(VBG(semclass_uncertainty))
+(VBG(infiltrating))
+(VBG(surrounding))
+(VBG(representing))
+(VBG(involving))
+(VBG(using))
+(VP(VBG)(PP)(PP))
+(VP(VBG(beginning))(PP(IN)(NP))(PP))
+(VP(MD)(RB)(VP))
+(VP(VB)(S))
+(VP(VBZ)(S))
+(VP(VBZ)(S(VP)))
+(VP(VBD)(NP))
+(VP(VBD(discussed))(NP))
+(VP(VBD)(NP(NP)))
+(VP(VBD)(NP(CONCEPT)))
+(VP(VBD)(NP(NP)(PP)))
+(VP(VP)(CC)(CONCEPT))
+(VP(VP)(CC(and))(CONCEPT(VP)))
+(VP(VBG)(NP))
+(VP(VBG(containing))(NP))
+(VP(VBG(measuring))(NP))
+(VP(VBG(involving))(NP))
+(VP(VBG(surrounding))(NP))
+(VP(VBG(semclass_evidence))(NP))
+(VP(VBG)(NP(NP)))
+(VP(VBG)(NP(CONCEPT)))
+(VP(VBG)(NP(NP)(,)(ADJP)))
+(VP(VP)(,))
+(VP(VP)(,(,)))
+(VP(VBP)(ADJP)(PP))
+(VP(VBP(semclass_copular))(ADJP(JJ))(PP))
+(VP(VBZ)(NP)(VP))
+(VP(VBZ(semclass_copular))(NP(JJ)(NNS))(VP))
+(VP(VBZ)(NP(JJ)(NNS))(VP(VBP)(NP)))
+(VP(VBZ(semclass_copular))(NP)(VP(VBP)(NP)))
+(VP(VB))
+(VP(VB)(CONCEPT))
+(VP(VB(semclass_copular))(CONCEPT))
+(VP(VB)(CONCEPT(NP)))
+(VP(VB)(CONCEPT(ADJP)))
+(VP(VBG)(CONCEPT))
+(VP(VBG)(CONCEPT(NP)))
+(VP(VBN)(PP)(PP))
+(VP(VBZ)(ADVP)(VP))
+(VP(VBZ(semclass_copular))(ADVP(RB))(VP))
+(VP(VBZ(semclass_copular))(ADVP)(VP(VBN)(PP)))
+(VP(VBZ)(RB)(VP))
+(VP(VB)(VP))
+(VP(VB(semclass_copular))(VP))
+(VP(VB)(VP(VBN)))
+(VP(VB)(VP(VBN)(PP)))
+(VP(VB)(NP)(PP))
+(VP(MD)(VP))
+(VP(MD(semclass_uncertainty))(VP))
+(VP(MD(will))(VP))
+(VP(MD(semclass_hypothetical_cue_list))(VP))
+(VP(MD)(VP(VB)(NP)))
+(VP(MD)(VP(VB)(NP)(PP)))
+(VP(MD)(VP(VB)(CONCEPT)))
+(VP(MD)(VP(VB)(ADJP)))
+(VP(MD)(VP(VB)(PP)))
+(VP(VBZ)(ADJP)(PP))
+(VP(VBZ(semclass_copular))(ADJP(RB)(JJ))(PP))
+(VP(VB)(HYPH)(PRT)(NP))
+(VP(VBZ)(RB)(ADVP)(VP))
+(VP(VBZ(semclass_copular))(RB(not))(ADVP)(VP))
+(VP(VBZ)(RB(not))(ADVP(RB))(VP))
+(VP(VBZ(semclass_copular))(RB)(ADVP(RB))(VP))
+(VP(TO)(ADVP)(VP))
+(VP(VB)(PP))
+(VP(VB)(PP(IN)(IN)(NP)))
+(VP(VB)(PP(IN)(NP)))
+(VP(VBZ)(PP))
+(VP(VBG)(PP))
+(VP(VBG)(PP(IN)(NP)))
+(VP(VBZ))
+(VP(MD)(ADVP)(VP))
+(VP(MD(will))(ADVP(RB))(VP))
+(VP(VBP)(ADJP))
+(VP(VBP(semclass_copular))(ADJP))
+(VP(VBP)(ADJP(JJ)(PP)))
+(VP(VBN)(PP))
+(VP(VBN(visualized))(PP))
+(VP(VBN)(PP(IN)(NP)))
+(VP(VBZ)(ADVP)(NP))
+(VP(VBZ(semclass_copular))(ADVP(RB))(NP))
+(VP(VB)(ADJP))
+(VP(VB(semclass_copular))(ADJP))
+(VP(VB)(ADJP(JJ)))
+(VP(VBZ)(NP)(PP))
+(VP(VBG))
+(VP(VP))
+(VP(VP(VBZ)(CONCEPT)))
+(VP(VBN)(S))
+(VP(VB)(NP))
+(VP(VB(semclass_association))(NP))
+(VP(VB(semclass_copular))(NP))
+(VP(VB(assess))(NP))
+(VP(VB(semclass_experience))(NP))
+(VP(VB(semclass_evidence))(NP))
+(VP(VB)(NP(NP)(CC)(NP)))
+(VP(VB)(NP(DT)(CONCEPT)))
+(VP(VB)(NP(NP)))
+(VP(VB)(NP(NP)(PP)))
+(VP(TO)(VP))
+(VP(TO(to))(VP))
+(VP(TO)(VP(VB)(VP)))
+(VP(TO)(VP(CONCEPT)))
+(VP(TO)(VP(VB)(CONCEPT)))
+(VP(VP)(CC)(VP))
+(VP(VP)(CC(and))(VP(MD)(VP)))
+(VP(VBD)(PP))
+(SBAR(IN)(S))
+(SBAR(IN(semclass_hypothetical_cue_list))(S))
+(SBAR(IN)(S(NP)(VP)))
+(S(NP)(VP)(.))
+(S(NP)(VP(VP)(CC)(CONCEPT))(.(.)))
+(S(NP)(VP(VP)(CC)(VP))(.(.)))
+(S(NP(DT))(VP)(.(.)))
+(S(NP(PRP))(VP)(.(.)))
+(S(NP(NP))(VP)(.(.)))
+(S(NP(NN))(VP)(.(.)))
+(S(NP(DT)(JJ)(JJ)(JJ)(NN))(VP)(.(.)))
+(S(NP)(FRAG))
+(S(PP)(,)(NP)(VP))
+(S(PP)(NP)(VP))
+(S(PP(IN)(NP))(NP(EX))(VP))
+(S(PP))
+(S(CONCEPT))
+(S(CONCEPT(NP)))
+(S(CONCEPT(VP)))
+(S(ADJP))
+(S(ADJP(JJ)(,)(JJ)))
+(S(ADJP(JJ)(PP)))
+(S(ADJP(JJ)))
+(S(NP)(CONCEPT))
+(S(NP(PRP))(CONCEPT))
+(S(NP(NP)(PP))(CONCEPT))
+(S(NP(NN))(CONCEPT))
+(S(NP)(CONCEPT(ADVP)))
+(S(NP)(CONCEPT(VP)))
+(S(NP)(CONCEPT(ADJP)))
+(S(NP)(ADVP)(VP))
+(S(NP)(ADVP(RB))(VP(VBD)(NP)))
+(S(ADVP)(,)(NP)(VP))
+(S(ADVP)(,(,))(NP(DT)(NNS))(VP))
+(S(ADVP(RB))(,)(NP)(VP(VBP)(ADJP)))
+(S(ADVP)(,(,))(NP)(VP(VBP)(ADJP)))
+(S(ADVP)(,)(NP(DT)(NNS))(VP(VBP)(ADJP)))
+(S(ADVP(RB))(,)(NP(DT)(NNS))(VP))
+(S(ADVP)(,)(NP)(VP)(.))
+(S(NP))
+(S(NP(NP)(CC)(NP)))
+(S(NP(DT)(CONCEPT)))
+(S(NP(NP)(PP)))
+(S(INTJ)(VP))
+(S(INTJ(UH))(VP))
+(JJR(greater))
+(JJR(smaller))
+(VBP(semclass_association))
+(VBP(semclass_copular))
+(VBP(semclass_evidence))

Propchange: ctakes/trunk/ctakes-assertion-res/src/main/resources/org/apache/ctakes/assertion/models/sharpUncertaintyFrags.txt
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