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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2016/07/19 19:45:15 UTC
Build failed in Jenkins: ctakes-trunk-compiletest » Apache cTAKES Temporal Information Extraction #821
See <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/821/changes>
Changes:
[clin] python scripts that are needed for running keras-based CNN
[clin] Enable Convolutional Neural Network for event-time classification. May need further debug.
NeuralEventTimeRelationsEvaluation: will evaluate pre-trained embedding features.
NeuralEventTimeRelationsCNNEvaluation: will write sequece of tokens to feed in to the CNN.
Both above evals will evaluate the test instances within the cleartk framework.
[clin] add syntactic embedding features for classic event-event model
[clin] add syntactic features for classic event-time model
[clin] temporally remove confidence score from classification results for CNN implementation
[clin] modify the way to generate embedding features for CNN
[clin] relax the rule for removing non-contains relations
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Loading model:
........................................................................................
19 Jul 2016 19:44:24 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
19 Jul 2016 19:44:24 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
19 Jul 2016 19:44:24 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = /tmp/lvg.properties
19 Jul 2016 19:44:24 INFO LvgCmdApiResourceImpl - config file absolute path = /tmp/lvg.properties
19 Jul 2016 19:44:24 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
19 Jul 2016 19:44:24 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
19 Jul 2016 19:44:24 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
19 Jul 2016 19:44:24 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
19 Jul 2016 19:44:24 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
19 Jul 2016 19:44:25 INFO SentenceDetector - Starting processing.
19 Jul 2016 19:44:25 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
19 Jul 2016 19:44:25 INFO LvgAnnotator - process(JCas)
19 Jul 2016 19:44:25 INFO ContextDependentTokenizerAnnotator - process(JCas)
19 Jul 2016 19:44:25 INFO POSTagger - process(JCas)
19 Jul 2016 19:44:25 INFO DocTimeRelAnnotatorTest - Event: old DocTimeRel:OVERLAP
19 Jul 2016 19:44:25 INFO DocTimeRelAnnotatorTest - Event: referred DocTimeRel:BEFORE
19 Jul 2016 19:44:25 INFO DocTimeRelAnnotatorTest - Event: diagnosed DocTimeRel:BEFORE
19 Jul 2016 19:44:25 INFO DocTimeRelAnnotatorTest - Event: cancer DocTimeRel:OVERLAP
19 Jul 2016 19:44:25 INFO DocTimeRelAnnotatorTest - Event: blood DocTimeRel:OVERLAP
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.724 sec
Running org.apache.ctakes.temporal.ae.EventTimeRelationAnnotatorTest
19 Jul 2016 19:44:28 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
19 Jul 2016 19:44:38 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
19 Jul 2016 19:44:38 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
19 Jul 2016 19:44:39 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = /tmp/lvg.properties
19 Jul 2016 19:44:39 INFO LvgCmdApiResourceImpl - config file absolute path = /tmp/lvg.properties
19 Jul 2016 19:44:39 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
19 Jul 2016 19:44:39 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
19 Jul 2016 19:44:39 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
19 Jul 2016 19:44:39 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
19 Jul 2016 19:44:39 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
19 Jul 2016 19:44:39 INFO SentenceDetector - Starting processing.
19 Jul 2016 19:44:39 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
19 Jul 2016 19:44:39 INFO LvgAnnotator - process(JCas)
19 Jul 2016 19:44:39 INFO ContextDependentTokenizerAnnotator - process(JCas)
19 Jul 2016 19:44:39 INFO POSTagger - process(JCas)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
Null value found in Feature(<Time-Class->, <NULL>)
19 Jul 2016 19:44:39 INFO EventTimeRelationAnnotatorTest - Relation: RelationArgument
id: 0
argument: TimeMention
sofa: _InitialView
begin: 58
end: 66
id: 0
ontologyConceptArr: <null>
typeID: 0
segmentID: <null>
sentenceID: <null>
discoveryTechnique: 0
confidence: 0.0
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
date: <null>
time: <null>
timeClass: <null>
role: "Arg1"
participatesIn: <null>
RelationArgument
id: 0
argument: EventMention
sofa: _InitialView
begin: 67
end: 76
id: 0
ontologyConceptArr: <null>
typeID: 0
segmentID: <null>
sentenceID: <null>
discoveryTechnique: 0
confidence: 1.3807402
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
event: Event
id: 0
ontologyConcept: <null>
mentions: <null>
discoveryTechnique: 0
confidence: 0.0
conditional: false
generic: false
subject: <null>
polarity: 0
uncertainty: 0
historyOf: 0
properties: EventProperties
contextualModality: <null>
contextualAspect: <null>
permanence: <null>
category: <null>
aspect: <null>
docTimeRel: <null>
degree: <null>
polarity: 0
role: "Arg2"
participatesIn: <null>
Category: CONTAINS
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 14.504 sec
Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest
19 Jul 2016 19:44:42 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........Java HotSpot(TM) 64-Bit Server VM warning: INFO: os::commit_memory(0x0000000767580000, 409993216, 0) failed; error='Cannot allocate memory' (errno=12)
#
# There is insufficient memory for the Java Runtime Environment to continue.
# Native memory allocation (mmap) failed to map 409993216 bytes for committing reserved memory.
# An error report file with more information is saved as:
# <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/hs_err_pid4708.log>
Results :
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
Build failed in Jenkins: ctakes-trunk-compiletest » Apache cTAKES Temporal Information Extraction #824
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/824/>
------------------------------------------
[...truncated 332 lines...]
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[60,42] [unchecked] unchecked call to CleartkExtractor(Class<SEARCH_T>,FeatureExtractor1<SEARCH_T>,Context...) as a member of the raw type CleartkExtractor
[WARNING] where SEARCH_T is a type-variable:
SEARCH_T extends Annotation declared in class CleartkExtractor
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[70,44] [unchecked] unchecked call to DistanceExtractor(String,Class<? extends Annotation>) as a member of the raw type DistanceExtractor
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[81,56] [unchecked] unchecked call to extract(JCas,T) as a member of the raw type FeatureExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in interface FeatureExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[81,17] [unchecked] unchecked method invocation: method addAll in interface List is applied to given types
[WARNING] required: Collection<? extends E>
found: List
where E is a type-variable:
E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[81,56] [unchecked] unchecked conversion
[WARNING] required: Collection<? extends E>
found: List
where E is a type-variable:
E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[82,56] [unchecked] unchecked call to extract(JCas,T) as a member of the raw type FeatureExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in interface FeatureExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[82,17] [unchecked] unchecked method invocation: method addAll in interface List is applied to given types
[WARNING] required: Collection<? extends E>
found: List
where E is a type-variable:
E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[82,56] [unchecked] unchecked conversion
[WARNING] required: Collection<? extends E>
found: List
where E is a type-variable:
E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[83,51] [unchecked] unchecked call to extractBetween(JCas,FOCUS_T,FOCUS_T) as a member of the raw type CleartkExtractor
[WARNING] where FOCUS_T is a type-variable:
FOCUS_T extends Annotation declared in class CleartkExtractor
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[83,17] [unchecked] unchecked method invocation: method addAll in interface List is applied to given types
[WARNING] required: Collection<? extends E>
found: List
where E is a type-variable:
E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[83,51] [unchecked] unchecked conversion
[WARNING] required: Collection<? extends E>
found: List
where E is a type-variable:
E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[84,17] [unchecked] unchecked method invocation: method addAll in interface List is applied to given types
[WARNING] required: Collection<? extends E>
found: List
where E is a type-variable:
E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UnexpandedTokenFeaturesExtractor.java>:[84,45] [unchecked] unchecked conversion
[WARNING] required: Collection<? extends E>
found: List
where E is a type-variable:
E extends Object declared in interface List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/NeuralEventTimeSelfRelationAnnotator.java>:[149,27] [unchecked] unchecked generic array creation for varargs parameter of type RelationFeaturesExtractor<IdentifiedAnnotation,IdentifiedAnnotation>[]
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/TimexAdmissionTimeAnnotator.java>:[78,30] [deprecation] createPrimitiveDescription(Class<? extends AnalysisComponent>,Object...) in AnalysisEngineFactory has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/TimexAdmissionTimeAnnotator.java>:[90,30] [deprecation] createPrimitiveDescription(Class<? extends AnalysisComponent>,Object...) in AnalysisEngineFactory has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/TimexAdmissionTimeAnnotator.java>:[131,4] [unchecked] unchecked call to TypePathExtractor(Class<T>,String) as a member of the raw type TypePathExtractor
[WARNING] where T is a type-variable:
T extends Annotation declared in class TypePathExtractor
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/TimexAdmissionTimeAnnotator.java>:[129,37] [unchecked] unchecked call to CombinedExtractor1(FeatureExtractor1<T>,FeatureExtractor1<T>) as a member of the raw type CombinedExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class CombinedExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/TimexAdmissionTimeAnnotator.java>:[132,26] [unchecked] unchecked call to CleartkExtractor(Class<SEARCH_T>,FeatureExtractor1<SEARCH_T>,Context...) as a member of the raw type CleartkExtractor
[WARNING] where SEARCH_T is a type-variable:
SEARCH_T extends Annotation declared in class CleartkExtractor
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/TimexAdmissionTimeAnnotator.java>:[198,58] [unchecked] unchecked call to extract(JCas,FOCUS_T) as a member of the raw type CleartkExtractor
[WARNING] where FOCUS_T is a type-variable:
FOCUS_T extends Annotation declared in class CleartkExtractor
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/TimexAdmissionTimeAnnotator.java>:[198,58] [unchecked] unchecked conversion
[WARNING] required: List<Feature>
found: List
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[75,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[78,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[81,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[104,38] [deprecation] createEnsembleDescription(File,String) in BackwardsTimeAnnotator has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[107,46] [deprecation] createEnsembleDescription(File,String) in ConstituencyBasedTimeAnnotator has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/MetaTimeAnnotator.java>:[110,32] [deprecation] createEnsembleDescription(File,String) in CRFTimeAnnotator has been deprecated
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/EventEventRelationAnnotator.java>:[144,27] [unchecked] unchecked generic array creation for varargs parameter of type RelationFeaturesExtractor<IdentifiedAnnotation,IdentifiedAnnotation>[]
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/EventTimeRelationAnnotator.java>:[122,27] [unchecked] unchecked generic array creation for varargs parameter of type RelationFeaturesExtractor<IdentifiedAnnotation,IdentifiedAnnotation>[]
[WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[38,42] [unchecked] unchecked call to CleartkExtractor(Class<SEARCH_T>,FeatureExtractor1<SEARCH_T>,Context...) as a member of the raw type CleartkExtractor
[WARNING] where SEARCH_T is a type-variable:
SEARCH_T extends Annotation declared in class CleartkExtractor
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[50,62] [unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as a member of the raw type NamingExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[54,62] [unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as a member of the raw type NamingExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[60,62] [unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as a member of the raw type NamingExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[64,62] [unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as a member of the raw type NamingExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[73,3] [unchecked] unchecked call to NamingExtractor1(String,FeatureExtractor1<T>) as a member of the raw type NamingExtractor1
[WARNING] where T is a type-variable:
T extends Annotation declared in class NamingExtractor1
<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/main/java/org/apache/ctakes/temporal/ae/feature/UMLSBasedTokenFeaturesExtractor.java>:[71,42] [unchecked] unchecked call to CleartkExtractor(Class<SEARCH_T>,FeatureExtractor1<SEARCH_T>,Context...) as a member of the raw type CleartkExtractor
[INFO]
[INFO] --- maven-dependency-plugin:2.8:unpack (unpack) @ ctakes-temporal ---
[INFO] Configured Artifact: net.sourceforge.ctakesresources:ctakes-resources-umls2011ab:3.1.1:jar
[INFO] ctakes-resources-umls2011ab-3.1.1.jar already unpacked.
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-temporal ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-temporal ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 7 resources
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-temporal ---
[INFO] Compiling 2 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/target/classes>
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-temporal ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/src/test/resources>
[INFO] Copying 3 resources
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-temporal ---
[INFO] Compiling 6 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/target/test-classes>
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-temporal ---
[INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.apache.ctakes.temporal.ae.BackwardsTimeAnnotatorTest
log4j: reset attribute= "false".
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
25 Jul 2016 17:35:39 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
25 Jul 2016 17:35:50 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
25 Jul 2016 17:35:50 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
25 Jul 2016 17:35:51 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = /tmp/lvg.properties
25 Jul 2016 17:35:51 INFO LvgCmdApiResourceImpl - config file absolute path = /tmp/lvg.properties
25 Jul 2016 17:35:51 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
25 Jul 2016 17:35:51 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data> (No such file or directory)
** Error: problem of opening/reading stop words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/stopWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data> (No such file or directory)
** Error: problem of opening/reading non-Info words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/nonInfoWords.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data> (No such file or directory)
** Error: problem of opening/reading conjunction words file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/conjunctionWord.data'.>
** ERR: problem of opening/reading diacritics file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/diacriticMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data> (No such file or directory)
** Error: problem of opening/reading ligature file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/ligatureMap.data'.>
** Error: problem of opening/reading symbol synonym file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/synonymMap.data> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/misc/removeS.data> (No such file or directory)
** Error: problem of opening/reading Unicode symbol file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/symbolMap.data> (No such file or directory)
** Error: problem of opening/reading Unicode file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/unicodeMap.data> (No such file or directory)
** Error: problem of opening/reading nonStripMap file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/Unicode/nonStripMap.data> (No such file or directory)
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/im.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/im.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
Exception: java.io.FileNotFoundException: <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/data/rules/dm.rul> (No such file or directory)
**Error: problem of opening/reading file '<https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws//data/rules/dm.rul'.>
25 Jul 2016 17:35:51 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/ws/>
25 Jul 2016 17:35:51 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jul 2016 17:35:51 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
25 Jul 2016 17:35:52 INFO SentenceDetector - Starting processing.
25 Jul 2016 17:35:52 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
25 Jul 2016 17:35:52 INFO LvgAnnotator - process(JCas)
25 Jul 2016 17:35:52 INFO ContextDependentTokenizerAnnotator - process(JCas)
25 Jul 2016 17:35:52 INFO POSTagger - process(JCas)
25 Jul 2016 17:35:52 INFO BackwardsTimeAnnotatorTest - Event: recently
25 Jul 2016 17:35:52 INFO BackwardsTimeAnnotatorTest - Event: 6 months ago
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 19.316 sec
Running org.apache.ctakes.temporal.ae.DocTimeRelAnnotatorTest
25 Jul 2016 17:35:56 INFO ClearNLPDependencyParserAE - using Morphy analysis? true
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
..........
Results :
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
Jenkins build is still unstable: ctakes-trunk-compiletest » Apache cTAKES Temporal Information Extraction #823
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/changes>
Jenkins build is unstable: ctakes-trunk-compiletest » Apache cTAKES Temporal Information Extraction #822
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/ctakes-trunk-compiletest/org.apache.ctakes$ctakes-temporal/822/changes>