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Posted to solr-user@lucene.apache.org by Danilo Tomasoni <to...@cosbi.eu> on 2019/02/12 08:53:42 UTC

misteriuos nullpointerexception while adding documents

Hello all,

I get this error while uploading my documents with 'set' modifier in 
json format.

My solr version is 7.3.1.

I disabled autocommit (both soft and hard), but used to work with a 
previous version of the schema.

Someone have any clue on what's going on here?

I can't reproduce the issue indexing locally on another solr 7.3.1 
instance, I get this error only in the production instance.

Thank you

Danilo


======== This is the error I get from client ========


{
   "responseHeader":{
     "status":500,
     "QTime":33},
   "error":{
     "trace":"

java.lang.NullPointerException
     at org.apache.solr.update.UpdateLog.lookup(UpdateLog.java:971)
     at 
org.apache.solr.handler.component.RealTimeGetComponent.getInputDocumentFromTlog(RealTimeGetComponent.java:537)
     at 
org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:617)
     at 
org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:594)
     at 
org.apache.solr.update.processor.DistributedUpdateProcessor.getUpdatedDocument(DistributedUpdateProcessor.java:1330)
     at 
org.apache.solr.update.processor.DistributedUpdateProcessor.versionAdd(DistributedUpdateProcessor.java:1049)
     at 
org.apache.solr.update.processor.DistributedUpdateProcessor.processAdd(DistributedUpdateProcessor.java:633)
     at 
org.apache.solr.update.processor.LogUpdateProcessorFactory$LogUpdateProcessor.processAdd(LogUpdateProcessorFactory.java:103)
     at 
org.apache.solr.update.processor.UpdateRequestProcessor.processAdd(UpdateRequestProcessor.java:55)
     at 
org.apache.solr.update.processor.FieldMutatingUpdateProcessor.processAdd(FieldMutatingUpdateProcessor.java:118)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:501)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
     at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
     at 
org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
     at 
org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
     at 
org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
     at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
     at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
     at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
     at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
     at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
     at 
org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
     at 
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
     at 
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
     at 
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
     at 
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
     at 
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
     at 
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
     at 
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
     at 
org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
     at 
org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at 
org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at org.eclipse.jetty.server.Server.handle(Server.java:530)
     at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
     at 
org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
     at 
org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
     at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
     at 
org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
     at 
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
     at 
org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
     at java.lang.Thread.run(Thread.java:748)
"

}


  ======= this is the error I see in solr.log ===============


2019-02-12 08:43:01.592 INFO  (qtp2137589296-19) [ x:COSBIBioIndex] 
o.a.s.u.p.LogUpdateProcessorFactory [COSBIBioIndex]  webapp=/solr 
path=/update/json params={}{add=[PUBMEDPMID24951927 
(1625251880396390400), PUBMEDPMID19328818 (1625251880437284864), 
PUBMEDPMID24304416 (1625251880442527744), PUBMEDPMID24398789 
(1625251880446722048), PUBMEDPMID23111281 (1625251880455110656), 
PUBMEDPMID26933085 (1625251880464547840), PUBMEDPMID18635358 
(1625251880471887872), PUBMEDPMID26856594 (1625251880472936448), 
PUBMEDPMID21803289 (1625251880479227904), PUBMEDPMID25722448 
(1625251880487616512), ... (194 adds)]} 0 5567
2019-02-12 08:43:01.594 ERROR (qtp2137589296-19) [ x:COSBIBioIndex] 
o.a.s.h.RequestHandlerBase org.eclipse.jetty.io.EofException: Early EOF
     at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
     at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
     at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
     at 
org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
     at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
     at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
     at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
     at java.io.InputStreamReader.read(InputStreamReader.java:184)
     at org.noggit.JSONParser.fill(JSONParser.java:208)
     at org.noggit.JSONParser.getMore(JSONParser.java:215)
     at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
     at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
     at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
     at org.noggit.JSONParser.getString(JSONParser.java:1142)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
     at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
     at 
org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
     at 
org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
     at 
org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
     at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
     at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
     at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
     at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
     at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
     at 
org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
     at 
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
     at 
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
     at 
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
     at 
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
     at 
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
     at 
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
     at 
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
     at 
org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
     at 
org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at 
org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at org.eclipse.jetty.server.Server.handle(Server.java:530)
     at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
     at 
org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
     at 
org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
     at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
     at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
     at 
org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
     at 
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
     at 
org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
     at java.lang.Thread.run(Thread.java:748)

2019-02-12 08:43:01.599 ERROR (qtp2137589296-19) [ x:COSBIBioIndex] 
o.a.s.s.HttpSolrCall null:org.eclipse.jetty.io.EofException: Early EOF
     at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
     at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
     at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
     at 
org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
     at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
     at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
     at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
     at java.io.InputStreamReader.read(InputStreamReader.java:184)
     at org.noggit.JSONParser.fill(JSONParser.java:208)
     at org.noggit.JSONParser.getMore(JSONParser.java:215)
     at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
     at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
     at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
     at org.noggit.JSONParser.getString(JSONParser.java:1142)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
     at 
org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
     at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
     at 
org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
     at 
org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
     at 
org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
     at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
     at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
     at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
     at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
     at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
     at 
org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
     at 
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
     at 
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
     at 
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
     at 
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
     at 
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
     at 
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
     at 
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
     at 
org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
     at 
org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at 
org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at org.eclipse.jetty.server.Server.handle(Server.java:530)
     at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
     at 
org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
     at 
org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
     at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
     at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
     at 
org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
     at 
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
     at 
org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
     at java.lang.Thread.run(Thread.java:748)

2019-02-12 08:43:01.599 INFO  (qtp2137589296-19) [ x:COSBIBioIndex] 
o.a.s.c.SolrCore [COSBIBioIndex]  CLOSING SolrCore 
org.apache.solr.core.SolrCore@44e058fb
2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex] 
o.a.s.m.SolrMetricManager Closing metric reporters for 
registry=solr.core.COSBIBioIndex, tag=1155553531
2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex] 
o.a.s.u.DirectUpdateHandler2 Committing on IndexWriter close.
2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex] 
o.a.s.u.SolrIndexWriter Calling setCommitData with 
IW:org.apache.solr.update.SolrIndexWriter@13750f6d commitCommandVersion:0
2019-02-12 08:43:02.915 ERROR (qtp2137589296-19) [ x:COSBIBioIndex] 
o.a.s.u.DirectUpdateHandler2 Error in final commit
java.lang.NoClassDefFoundError: 
org/apache/lucene/index/BufferedUpdatesStream$ApplyDeletesResult
     at 
org.apache.lucene.index.BufferedUpdatesStream.closeSegmentStates(BufferedUpdatesStream.java:368)
     at 
org.apache.lucene.index.FrozenBufferedUpdates.finishApply(FrozenBufferedUpdates.java:402)
     at 
org.apache.lucene.index.FrozenBufferedUpdates.apply(FrozenBufferedUpdates.java:327)
     at 
org.apache.lucene.index.DocumentsWriter$ResolveUpdatesEvent.process(DocumentsWriter.java:740)
     at 
org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5106)
     at 
org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5096)
     at 
org.apache.lucene.index.IndexWriter.prepareCommitInternal(IndexWriter.java:3258)
     at 
org.apache.lucene.index.IndexWriter.commitInternal(IndexWriter.java:3458)
     at org.apache.lucene.index.IndexWriter.commit(IndexWriter.java:3423)
     at 
org.apache.solr.update.DirectUpdateHandler2.closeWriter(DirectUpdateHandler2.java:875)
     at 
org.apache.solr.update.DefaultSolrCoreState.closeIndexWriter(DefaultSolrCoreState.java:105)
     at 
org.apache.solr.update.DefaultSolrCoreState.close(DefaultSolrCoreState.java:402)
     at 
org.apache.solr.update.SolrCoreState.decrefSolrCoreState(SolrCoreState.java:83)
     at org.apache.solr.core.SolrCore.close(SolrCore.java:1564)
     at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
     at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
     at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
     at 
org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
     at 
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
     at 
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
     at 
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
     at 
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
     at 
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
     at 
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
     at 
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
     at 
org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
     at 
org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at 
org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at org.eclipse.jetty.server.Server.handle(Server.java:530)
     at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
     at 
org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
     at 
org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
     at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
     at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
     at 
org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
     at 
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
     at 
org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
     at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: 
org.apache.lucene.index.BufferedUpdatesStream$ApplyDeletesResult
     at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
     at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
     at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
     at 
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
     at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
     ... 50 more
2019-02-12 08:43:02.920 ERROR (qtp2137589296-19) [ x:COSBIBioIndex] 
o.a.s.c.SolrCore java.lang.NoClassDefFoundError: 
org/apache/solr/core/ShutdownAwareDirectory
     at 
org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:298)
     at 
org.apache.solr.core.CachingDirectoryFactory.closeCacheValue(CachingDirectoryFactory.java:264)
     at 
org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:194)
     at org.apache.solr.core.SolrCore.close(SolrCore.java:1633)
     at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
     at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
     at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
     at 
org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
     at 
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
     at 
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
     at 
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
     at 
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
     at 
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
     at 
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
     at 
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
     at 
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
     at 
org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
     at 
org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at 
org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
     at 
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
     at org.eclipse.jetty.server.Server.handle(Server.java:530)
     at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
     at 
org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
     at 
org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
     at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
     at org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
     at 
org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
     at 
org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
     at 
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
     at 
org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
     at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: 
org.apache.solr.core.ShutdownAwareDirectory
     at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
     at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
     at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
     at 
org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
     at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
     ... 40 more


-- 
Danilo Tomasoni
COSBI

As for the European General Data Protection Regulation 2016/679 on the protection of natural persons with regard to the processing of personal data, we inform you that all the data we possess are object of treatement in the respect of the normative provided for by the cited GDPR.

It is your right to be informed on which of your data are used and how; you may ask for their correction, cancellation or you may oppose to their use by written request sent by recorded delivery to The Microsoft Research – University of Trento Centre for Computational and Systems Biology Scarl, Piazza Manifattura 1, 38068 Rovereto (TN), Italy.

Re: misteriuos nullpointerexception while adding documents

Posted by Erick Erickson <er...@gmail.com>.
bq. I also tried with a plain solr installation (just unpack solr and copy
the index folder), and in this way it works.

Then it sounds like your production system was not installed properly
if it mysteriously fails there but succeeds on a new install.

If you upgraded your prod system, did you use the configs that come
with the distro you're using or copy the old configs from a previous
version? The former is preferred.

Best,
Erick

On Wed, Feb 13, 2019 at 2:58 AM Danilo Tomasoni <to...@cosbi.eu> wrote:
>
> I changed the schema, but I deleted all the documents and tried a reindex.
>
> I also tried deleting the core and re-adding it.
>
> The autocommit is disabled because hard commits are controlled in the
> client-side.
>
> I also tried with a plain solr installation (just unpack solr and copy
> the index folder), and in this way it works.
>
> In my production environment, If I create a new core with exactly the
> same configuration it doesn't ( I mean, after a couple of POST the error
> I sent you appears in the logs and the core is stopped and reloaded).
>
> Any clue?
>
> Thank you for your suggestions
>
> Danilo
>
> On 12/02/19 18:09, Erick Erickson wrote:
> > bq. I disabled autocommit (both soft and hard), but used to work with a
> > previous version of the schema.
> >
> >
> > First, did you _change_ the schema without
> > 1> deleting all the docs in the index
> > 2> reindexing everything
> >
> > or better, indexing to a new collection and aliasing to it?
> >
> > If you changed the schema and continued indexing to the
> > collection _at any time in the past_ you may have
> > inconsistent merged segments. The only way to fix this
> > is to re-index, and I strongly recommend to a new
> > collection.
> >
> > Second:
> > do _not_ disable, commits and index for a long time.
> > 1> your tlog will grow forever until you do a hard commit
> > 2> certain internal Solr structures grow until a new searcher
> >      is opened, either soft commit or hard-commit-with-opensearcher-true
> >
> > https://lucidworks.com/2013/08/23/understanding-transaction-logs-softcommit-and-commit-in-sorlcloud/
> >
> > Best,
> > Erick
> >
> > On Tue, Feb 12, 2019 at 1:03 AM MUNENDRA S.N <sn...@gmail.com> wrote:
> >> Are you trying to set some field to null in the request?? Also, is that
> >> particular field numeric, doc valued enabled and stored set to false??
> >> Sharing more details would help here, specifically update request and
> >> schema for those fields.
> >>
> >> Regards,
> >> Munendra S N
> >>
> >>
> >> On Tue, Feb 12, 2019 at 2:24 PM Danilo Tomasoni <to...@cosbi.eu> wrote:
> >>
> >>> Hello all,
> >>>
> >>> I get this error while uploading my documents with 'set' modifier in
> >>> json format.
> >>>
> >>> My solr version is 7.3.1.
> >>>
> >>> I disabled autocommit (both soft and hard), but used to work with a
> >>> previous version of the schema.
> >>>
> >>> Someone have any clue on what's going on here?
> >>>
> >>> I can't reproduce the issue indexing locally on another solr 7.3.1
> >>> instance, I get this error only in the production instance.
> >>>
> >>> Thank you
> >>>
> >>> Danilo
> >>>
> >>>
> >>> ======== This is the error I get from client ========
> >>>
> >>>
> >>> {
> >>>     "responseHeader":{
> >>>       "status":500,
> >>>       "QTime":33},
> >>>     "error":{
> >>>       "trace":"
> >>>
> >>> java.lang.NullPointerException
> >>>       at org.apache.solr.update.UpdateLog.lookup(UpdateLog.java:971)
> >>>       at
> >>>
> >>> org.apache.solr.handler.component.RealTimeGetComponent.getInputDocumentFromTlog(RealTimeGetComponent.java:537)
> >>>       at
> >>>
> >>> org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:617)
> >>>       at
> >>>
> >>> org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:594)
> >>>       at
> >>>
> >>> org.apache.solr.update.processor.DistributedUpdateProcessor.getUpdatedDocument(DistributedUpdateProcessor.java:1330)
> >>>       at
> >>>
> >>> org.apache.solr.update.processor.DistributedUpdateProcessor.versionAdd(DistributedUpdateProcessor.java:1049)
> >>>       at
> >>>
> >>> org.apache.solr.update.processor.DistributedUpdateProcessor.processAdd(DistributedUpdateProcessor.java:633)
> >>>       at
> >>>
> >>> org.apache.solr.update.processor.LogUpdateProcessorFactory$LogUpdateProcessor.processAdd(LogUpdateProcessorFactory.java:103)
> >>>       at
> >>>
> >>> org.apache.solr.update.processor.UpdateRequestProcessor.processAdd(UpdateRequestProcessor.java:55)
> >>>       at
> >>>
> >>> org.apache.solr.update.processor.FieldMutatingUpdateProcessor.processAdd(FieldMutatingUpdateProcessor.java:118)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:501)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
> >>>       at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
> >>>       at
> >>>
> >>> org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
> >>>       at
> >>>
> >>> org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
> >>>       at
> >>>
> >>> org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
> >>>       at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
> >>>       at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
> >>>       at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
> >>>       at
> >>>
> >>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
> >>>       at
> >>>
> >>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >>>       at
> >>>
> >>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >>>       at
> >>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >>>       at
> >>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >>>       at
> >>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at
> >>>
> >>> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >>>       at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >>>       at
> >>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >>>       at
> >>> org.eclipse.jetty.io
> >>> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >>>       at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >>>       at
> >>> org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >>>       at java.lang.Thread.run(Thread.java:748)
> >>> "
> >>>
> >>> }
> >>>
> >>>
> >>>    ======= this is the error I see in solr.log ===============
> >>>
> >>>
> >>> 2019-02-12 08:43:01.592 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> >>> o.a.s.u.p.LogUpdateProcessorFactory [COSBIBioIndex]  webapp=/solr
> >>> path=/update/json params={}{add=[PUBMEDPMID24951927
> >>> (1625251880396390400), PUBMEDPMID19328818 (1625251880437284864),
> >>> PUBMEDPMID24304416 (1625251880442527744), PUBMEDPMID24398789
> >>> (1625251880446722048), PUBMEDPMID23111281 (1625251880455110656),
> >>> PUBMEDPMID26933085 (1625251880464547840), PUBMEDPMID18635358
> >>> (1625251880471887872), PUBMEDPMID26856594 (1625251880472936448),
> >>> PUBMEDPMID21803289 (1625251880479227904), PUBMEDPMID25722448
> >>> (1625251880487616512), ... (194 adds)]} 0 5567
> >>> 2019-02-12 08:43:01.594 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> >>> o.a.s.h.RequestHandlerBase org.eclipse.jetty.io.EofException: Early EOF
> >>>       at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
> >>>       at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
> >>>       at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
> >>>       at
> >>>
> >>> org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
> >>>       at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
> >>>       at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
> >>>       at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
> >>>       at java.io.InputStreamReader.read(InputStreamReader.java:184)
> >>>       at org.noggit.JSONParser.fill(JSONParser.java:208)
> >>>       at org.noggit.JSONParser.getMore(JSONParser.java:215)
> >>>       at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
> >>>       at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
> >>>       at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
> >>>       at org.noggit.JSONParser.getString(JSONParser.java:1142)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
> >>>       at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
> >>>       at
> >>>
> >>> org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
> >>>       at
> >>>
> >>> org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
> >>>       at
> >>>
> >>> org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
> >>>       at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
> >>>       at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
> >>>       at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
> >>>       at
> >>>
> >>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
> >>>       at
> >>>
> >>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >>>       at
> >>>
> >>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >>>       at
> >>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >>>       at
> >>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >>>       at
> >>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at
> >>>
> >>> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >>>       at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >>>       at
> >>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >>>       at
> >>> org.eclipse.jetty.io
> >>> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >>>       at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >>>       at org.eclipse.jetty.io
> >>> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >>>       at java.lang.Thread.run(Thread.java:748)
> >>>
> >>> 2019-02-12 08:43:01.599 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> >>> o.a.s.s.HttpSolrCall null:org.eclipse.jetty.io.EofException: Early EOF
> >>>       at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
> >>>       at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
> >>>       at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
> >>>       at
> >>>
> >>> org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
> >>>       at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
> >>>       at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
> >>>       at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
> >>>       at java.io.InputStreamReader.read(InputStreamReader.java:184)
> >>>       at org.noggit.JSONParser.fill(JSONParser.java:208)
> >>>       at org.noggit.JSONParser.getMore(JSONParser.java:215)
> >>>       at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
> >>>       at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
> >>>       at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
> >>>       at org.noggit.JSONParser.getString(JSONParser.java:1142)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
> >>>       at
> >>>
> >>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
> >>>       at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
> >>>       at
> >>>
> >>> org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
> >>>       at
> >>>
> >>> org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
> >>>       at
> >>>
> >>> org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
> >>>       at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
> >>>       at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
> >>>       at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
> >>>       at
> >>>
> >>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
> >>>       at
> >>>
> >>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >>>       at
> >>>
> >>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >>>       at
> >>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >>>       at
> >>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >>>       at
> >>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at
> >>>
> >>> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >>>       at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >>>       at
> >>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >>>       at
> >>> org.eclipse.jetty.io
> >>> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >>>       at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >>>       at org.eclipse.jetty.io
> >>> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >>>       at java.lang.Thread.run(Thread.java:748)
> >>>
> >>> 2019-02-12 08:43:01.599 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> >>> o.a.s.c.SolrCore [COSBIBioIndex]  CLOSING SolrCore
> >>> org.apache.solr.core.SolrCore@44e058fb
> >>> 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> >>> o.a.s.m.SolrMetricManager Closing metric reporters for
> >>> registry=solr.core.COSBIBioIndex, tag=1155553531
> >>> 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> >>> o.a.s.u.DirectUpdateHandler2 Committing on IndexWriter close.
> >>> 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> >>> o.a.s.u.SolrIndexWriter Calling setCommitData with
> >>> IW:org.apache.solr.update.SolrIndexWriter@13750f6d commitCommandVersion:0
> >>> 2019-02-12 08:43:02.915 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> >>> o.a.s.u.DirectUpdateHandler2 Error in final commit
> >>> java.lang.NoClassDefFoundError:
> >>> org/apache/lucene/index/BufferedUpdatesStream$ApplyDeletesResult
> >>>       at
> >>>
> >>> org.apache.lucene.index.BufferedUpdatesStream.closeSegmentStates(BufferedUpdatesStream.java:368)
> >>>       at
> >>>
> >>> org.apache.lucene.index.FrozenBufferedUpdates.finishApply(FrozenBufferedUpdates.java:402)
> >>>       at
> >>>
> >>> org.apache.lucene.index.FrozenBufferedUpdates.apply(FrozenBufferedUpdates.java:327)
> >>>       at
> >>>
> >>> org.apache.lucene.index.DocumentsWriter$ResolveUpdatesEvent.process(DocumentsWriter.java:740)
> >>>       at
> >>> org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5106)
> >>>       at
> >>> org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5096)
> >>>       at
> >>>
> >>> org.apache.lucene.index.IndexWriter.prepareCommitInternal(IndexWriter.java:3258)
> >>>       at
> >>> org.apache.lucene.index.IndexWriter.commitInternal(IndexWriter.java:3458)
> >>>       at org.apache.lucene.index.IndexWriter.commit(IndexWriter.java:3423)
> >>>       at
> >>>
> >>> org.apache.solr.update.DirectUpdateHandler2.closeWriter(DirectUpdateHandler2.java:875)
> >>>       at
> >>>
> >>> org.apache.solr.update.DefaultSolrCoreState.closeIndexWriter(DefaultSolrCoreState.java:105)
> >>>       at
> >>>
> >>> org.apache.solr.update.DefaultSolrCoreState.close(DefaultSolrCoreState.java:402)
> >>>       at
> >>>
> >>> org.apache.solr.update.SolrCoreState.decrefSolrCoreState(SolrCoreState.java:83)
> >>>       at org.apache.solr.core.SolrCore.close(SolrCore.java:1564)
> >>>       at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
> >>>       at
> >>>
> >>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
> >>>       at
> >>>
> >>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >>>       at
> >>>
> >>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >>>       at
> >>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >>>       at
> >>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >>>       at
> >>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at
> >>>
> >>> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >>>       at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >>>       at
> >>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >>>       at
> >>> org.eclipse.jetty.io
> >>> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >>>       at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >>>       at org.eclipse.jetty.io
> >>> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >>>       at java.lang.Thread.run(Thread.java:748)
> >>> Caused by: java.lang.ClassNotFoundException:
> >>> org.apache.lucene.index.BufferedUpdatesStream$ApplyDeletesResult
> >>>       at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
> >>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
> >>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >>>       at
> >>>
> >>> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
> >>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >>>       ... 50 more
> >>> 2019-02-12 08:43:02.920 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> >>> o.a.s.c.SolrCore java.lang.NoClassDefFoundError:
> >>> org/apache/solr/core/ShutdownAwareDirectory
> >>>       at
> >>>
> >>> org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:298)
> >>>       at
> >>>
> >>> org.apache.solr.core.CachingDirectoryFactory.closeCacheValue(CachingDirectoryFactory.java:264)
> >>>       at
> >>>
> >>> org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:194)
> >>>       at org.apache.solr.core.SolrCore.close(SolrCore.java:1633)
> >>>       at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
> >>>       at
> >>>
> >>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
> >>>       at
> >>>
> >>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >>>       at
> >>>
> >>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >>>       at
> >>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >>>       at
> >>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >>>       at
> >>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at
> >>>
> >>> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >>>       at
> >>>
> >>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >>>       at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >>>       at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >>>       at
> >>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >>>       at
> >>> org.eclipse.jetty.io
> >>> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >>>       at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >>>       at org.eclipse.jetty.io
> >>> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >>>       at
> >>>
> >>> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >>>       at java.lang.Thread.run(Thread.java:748)
> >>> Caused by: java.lang.ClassNotFoundException:
> >>> org.apache.solr.core.ShutdownAwareDirectory
> >>>       at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
> >>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
> >>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >>>       at
> >>>
> >>> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
> >>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >>>       ... 40 more
> >>>
> >>>
> >>> --
> >>> Danilo Tomasoni
> >>> COSBI
> >>>
> >>> As for the European General Data Protection Regulation 2016/679 on the
> >>> protection of natural persons with regard to the processing of personal
> >>> data, we inform you that all the data we possess are object of treatement
> >>> in the respect of the normative provided for by the cited GDPR.
> >>>
> >>> It is your right to be informed on which of your data are used and how;
> >>> you may ask for their correction, cancellation or you may oppose to their
> >>> use by written request sent by recorded delivery to The Microsoft Research
> >>> – University of Trento Centre for Computational and Systems Biology Scarl,
> >>> Piazza Manifattura 1, 38068 Rovereto (TN), Italy.
> >>>
> >>>
> --
> Danilo Tomasoni
> COSBI
>
> As for the European General Data Protection Regulation 2016/679 on the protection of natural persons with regard to the processing of personal data, we inform you that all the data we possess are object of treatement in the respect of the normative provided for by the cited GDPR.
>
> It is your right to be informed on which of your data are used and how; you may ask for their correction, cancellation or you may oppose to their use by written request sent by recorded delivery to The Microsoft Research – University of Trento Centre for Computational and Systems Biology Scarl, Piazza Manifattura 1, 38068 Rovereto (TN), Italy.
>

Re: misteriuos nullpointerexception while adding documents

Posted by Danilo Tomasoni <to...@cosbi.eu>.
I changed the schema, but I deleted all the documents and tried a reindex.

I also tried deleting the core and re-adding it.

The autocommit is disabled because hard commits are controlled in the 
client-side.

I also tried with a plain solr installation (just unpack solr and copy 
the index folder), and in this way it works.

In my production environment, If I create a new core with exactly the 
same configuration it doesn't ( I mean, after a couple of POST the error 
I sent you appears in the logs and the core is stopped and reloaded).

Any clue?

Thank you for your suggestions

Danilo

On 12/02/19 18:09, Erick Erickson wrote:
> bq. I disabled autocommit (both soft and hard), but used to work with a
> previous version of the schema.
>
>
> First, did you _change_ the schema without
> 1> deleting all the docs in the index
> 2> reindexing everything
>
> or better, indexing to a new collection and aliasing to it?
>
> If you changed the schema and continued indexing to the
> collection _at any time in the past_ you may have
> inconsistent merged segments. The only way to fix this
> is to re-index, and I strongly recommend to a new
> collection.
>
> Second:
> do _not_ disable, commits and index for a long time.
> 1> your tlog will grow forever until you do a hard commit
> 2> certain internal Solr structures grow until a new searcher
>      is opened, either soft commit or hard-commit-with-opensearcher-true
>
> https://lucidworks.com/2013/08/23/understanding-transaction-logs-softcommit-and-commit-in-sorlcloud/
>
> Best,
> Erick
>
> On Tue, Feb 12, 2019 at 1:03 AM MUNENDRA S.N <sn...@gmail.com> wrote:
>> Are you trying to set some field to null in the request?? Also, is that
>> particular field numeric, doc valued enabled and stored set to false??
>> Sharing more details would help here, specifically update request and
>> schema for those fields.
>>
>> Regards,
>> Munendra S N
>>
>>
>> On Tue, Feb 12, 2019 at 2:24 PM Danilo Tomasoni <to...@cosbi.eu> wrote:
>>
>>> Hello all,
>>>
>>> I get this error while uploading my documents with 'set' modifier in
>>> json format.
>>>
>>> My solr version is 7.3.1.
>>>
>>> I disabled autocommit (both soft and hard), but used to work with a
>>> previous version of the schema.
>>>
>>> Someone have any clue on what's going on here?
>>>
>>> I can't reproduce the issue indexing locally on another solr 7.3.1
>>> instance, I get this error only in the production instance.
>>>
>>> Thank you
>>>
>>> Danilo
>>>
>>>
>>> ======== This is the error I get from client ========
>>>
>>>
>>> {
>>>     "responseHeader":{
>>>       "status":500,
>>>       "QTime":33},
>>>     "error":{
>>>       "trace":"
>>>
>>> java.lang.NullPointerException
>>>       at org.apache.solr.update.UpdateLog.lookup(UpdateLog.java:971)
>>>       at
>>>
>>> org.apache.solr.handler.component.RealTimeGetComponent.getInputDocumentFromTlog(RealTimeGetComponent.java:537)
>>>       at
>>>
>>> org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:617)
>>>       at
>>>
>>> org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:594)
>>>       at
>>>
>>> org.apache.solr.update.processor.DistributedUpdateProcessor.getUpdatedDocument(DistributedUpdateProcessor.java:1330)
>>>       at
>>>
>>> org.apache.solr.update.processor.DistributedUpdateProcessor.versionAdd(DistributedUpdateProcessor.java:1049)
>>>       at
>>>
>>> org.apache.solr.update.processor.DistributedUpdateProcessor.processAdd(DistributedUpdateProcessor.java:633)
>>>       at
>>>
>>> org.apache.solr.update.processor.LogUpdateProcessorFactory$LogUpdateProcessor.processAdd(LogUpdateProcessorFactory.java:103)
>>>       at
>>>
>>> org.apache.solr.update.processor.UpdateRequestProcessor.processAdd(UpdateRequestProcessor.java:55)
>>>       at
>>>
>>> org.apache.solr.update.processor.FieldMutatingUpdateProcessor.processAdd(FieldMutatingUpdateProcessor.java:118)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:501)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
>>>       at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
>>>       at
>>>
>>> org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
>>>       at
>>>
>>> org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
>>>       at
>>>
>>> org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
>>>       at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
>>>       at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
>>>       at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
>>>       at
>>>
>>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
>>>       at
>>>
>>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
>>>       at
>>>
>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
>>>       at
>>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>>>       at
>>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
>>>       at
>>>
>>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
>>>       at
>>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
>>>       at
>>>
>>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at
>>>
>>> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at org.eclipse.jetty.server.Server.handle(Server.java:530)
>>>       at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
>>>       at
>>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
>>>       at
>>> org.eclipse.jetty.io
>>> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
>>>       at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
>>>       at
>>> org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
>>>       at java.lang.Thread.run(Thread.java:748)
>>> "
>>>
>>> }
>>>
>>>
>>>    ======= this is the error I see in solr.log ===============
>>>
>>>
>>> 2019-02-12 08:43:01.592 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
>>> o.a.s.u.p.LogUpdateProcessorFactory [COSBIBioIndex]  webapp=/solr
>>> path=/update/json params={}{add=[PUBMEDPMID24951927
>>> (1625251880396390400), PUBMEDPMID19328818 (1625251880437284864),
>>> PUBMEDPMID24304416 (1625251880442527744), PUBMEDPMID24398789
>>> (1625251880446722048), PUBMEDPMID23111281 (1625251880455110656),
>>> PUBMEDPMID26933085 (1625251880464547840), PUBMEDPMID18635358
>>> (1625251880471887872), PUBMEDPMID26856594 (1625251880472936448),
>>> PUBMEDPMID21803289 (1625251880479227904), PUBMEDPMID25722448
>>> (1625251880487616512), ... (194 adds)]} 0 5567
>>> 2019-02-12 08:43:01.594 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
>>> o.a.s.h.RequestHandlerBase org.eclipse.jetty.io.EofException: Early EOF
>>>       at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
>>>       at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
>>>       at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
>>>       at
>>>
>>> org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
>>>       at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
>>>       at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
>>>       at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
>>>       at java.io.InputStreamReader.read(InputStreamReader.java:184)
>>>       at org.noggit.JSONParser.fill(JSONParser.java:208)
>>>       at org.noggit.JSONParser.getMore(JSONParser.java:215)
>>>       at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
>>>       at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
>>>       at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
>>>       at org.noggit.JSONParser.getString(JSONParser.java:1142)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
>>>       at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
>>>       at
>>>
>>> org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
>>>       at
>>>
>>> org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
>>>       at
>>>
>>> org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
>>>       at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
>>>       at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
>>>       at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
>>>       at
>>>
>>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
>>>       at
>>>
>>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
>>>       at
>>>
>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
>>>       at
>>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>>>       at
>>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
>>>       at
>>>
>>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
>>>       at
>>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
>>>       at
>>>
>>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at
>>>
>>> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at org.eclipse.jetty.server.Server.handle(Server.java:530)
>>>       at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
>>>       at
>>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
>>>       at
>>> org.eclipse.jetty.io
>>> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
>>>       at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
>>>       at org.eclipse.jetty.io
>>> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
>>>       at java.lang.Thread.run(Thread.java:748)
>>>
>>> 2019-02-12 08:43:01.599 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
>>> o.a.s.s.HttpSolrCall null:org.eclipse.jetty.io.EofException: Early EOF
>>>       at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
>>>       at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
>>>       at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
>>>       at
>>>
>>> org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
>>>       at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
>>>       at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
>>>       at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
>>>       at java.io.InputStreamReader.read(InputStreamReader.java:184)
>>>       at org.noggit.JSONParser.fill(JSONParser.java:208)
>>>       at org.noggit.JSONParser.getMore(JSONParser.java:215)
>>>       at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
>>>       at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
>>>       at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
>>>       at org.noggit.JSONParser.getString(JSONParser.java:1142)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
>>>       at
>>>
>>> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
>>>       at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
>>>       at
>>>
>>> org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
>>>       at
>>>
>>> org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
>>>       at
>>>
>>> org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
>>>       at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
>>>       at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
>>>       at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
>>>       at
>>>
>>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
>>>       at
>>>
>>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
>>>       at
>>>
>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
>>>       at
>>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>>>       at
>>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
>>>       at
>>>
>>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
>>>       at
>>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
>>>       at
>>>
>>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at
>>>
>>> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at org.eclipse.jetty.server.Server.handle(Server.java:530)
>>>       at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
>>>       at
>>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
>>>       at
>>> org.eclipse.jetty.io
>>> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
>>>       at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
>>>       at org.eclipse.jetty.io
>>> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
>>>       at java.lang.Thread.run(Thread.java:748)
>>>
>>> 2019-02-12 08:43:01.599 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
>>> o.a.s.c.SolrCore [COSBIBioIndex]  CLOSING SolrCore
>>> org.apache.solr.core.SolrCore@44e058fb
>>> 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
>>> o.a.s.m.SolrMetricManager Closing metric reporters for
>>> registry=solr.core.COSBIBioIndex, tag=1155553531
>>> 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
>>> o.a.s.u.DirectUpdateHandler2 Committing on IndexWriter close.
>>> 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
>>> o.a.s.u.SolrIndexWriter Calling setCommitData with
>>> IW:org.apache.solr.update.SolrIndexWriter@13750f6d commitCommandVersion:0
>>> 2019-02-12 08:43:02.915 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
>>> o.a.s.u.DirectUpdateHandler2 Error in final commit
>>> java.lang.NoClassDefFoundError:
>>> org/apache/lucene/index/BufferedUpdatesStream$ApplyDeletesResult
>>>       at
>>>
>>> org.apache.lucene.index.BufferedUpdatesStream.closeSegmentStates(BufferedUpdatesStream.java:368)
>>>       at
>>>
>>> org.apache.lucene.index.FrozenBufferedUpdates.finishApply(FrozenBufferedUpdates.java:402)
>>>       at
>>>
>>> org.apache.lucene.index.FrozenBufferedUpdates.apply(FrozenBufferedUpdates.java:327)
>>>       at
>>>
>>> org.apache.lucene.index.DocumentsWriter$ResolveUpdatesEvent.process(DocumentsWriter.java:740)
>>>       at
>>> org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5106)
>>>       at
>>> org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5096)
>>>       at
>>>
>>> org.apache.lucene.index.IndexWriter.prepareCommitInternal(IndexWriter.java:3258)
>>>       at
>>> org.apache.lucene.index.IndexWriter.commitInternal(IndexWriter.java:3458)
>>>       at org.apache.lucene.index.IndexWriter.commit(IndexWriter.java:3423)
>>>       at
>>>
>>> org.apache.solr.update.DirectUpdateHandler2.closeWriter(DirectUpdateHandler2.java:875)
>>>       at
>>>
>>> org.apache.solr.update.DefaultSolrCoreState.closeIndexWriter(DefaultSolrCoreState.java:105)
>>>       at
>>>
>>> org.apache.solr.update.DefaultSolrCoreState.close(DefaultSolrCoreState.java:402)
>>>       at
>>>
>>> org.apache.solr.update.SolrCoreState.decrefSolrCoreState(SolrCoreState.java:83)
>>>       at org.apache.solr.core.SolrCore.close(SolrCore.java:1564)
>>>       at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
>>>       at
>>>
>>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
>>>       at
>>>
>>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
>>>       at
>>>
>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
>>>       at
>>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>>>       at
>>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
>>>       at
>>>
>>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
>>>       at
>>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
>>>       at
>>>
>>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at
>>>
>>> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at org.eclipse.jetty.server.Server.handle(Server.java:530)
>>>       at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
>>>       at
>>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
>>>       at
>>> org.eclipse.jetty.io
>>> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
>>>       at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
>>>       at org.eclipse.jetty.io
>>> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
>>>       at java.lang.Thread.run(Thread.java:748)
>>> Caused by: java.lang.ClassNotFoundException:
>>> org.apache.lucene.index.BufferedUpdatesStream$ApplyDeletesResult
>>>       at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
>>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
>>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>>>       at
>>>
>>> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
>>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>>>       ... 50 more
>>> 2019-02-12 08:43:02.920 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
>>> o.a.s.c.SolrCore java.lang.NoClassDefFoundError:
>>> org/apache/solr/core/ShutdownAwareDirectory
>>>       at
>>>
>>> org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:298)
>>>       at
>>>
>>> org.apache.solr.core.CachingDirectoryFactory.closeCacheValue(CachingDirectoryFactory.java:264)
>>>       at
>>>
>>> org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:194)
>>>       at org.apache.solr.core.SolrCore.close(SolrCore.java:1633)
>>>       at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
>>>       at
>>>
>>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
>>>       at
>>>
>>> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
>>>       at
>>>
>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
>>>       at
>>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>>>       at
>>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
>>>       at
>>>
>>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
>>>       at
>>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
>>>       at
>>>
>>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at
>>>
>>> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
>>>       at
>>>
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>>>       at org.eclipse.jetty.server.Server.handle(Server.java:530)
>>>       at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
>>>       at
>>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
>>>       at
>>> org.eclipse.jetty.io
>>> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
>>>       at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
>>>       at org.eclipse.jetty.io
>>> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
>>>       at
>>>
>>> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
>>>       at java.lang.Thread.run(Thread.java:748)
>>> Caused by: java.lang.ClassNotFoundException:
>>> org.apache.solr.core.ShutdownAwareDirectory
>>>       at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
>>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
>>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>>>       at
>>>
>>> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
>>>       at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>>>       ... 40 more
>>>
>>>
>>> --
>>> Danilo Tomasoni
>>> COSBI
>>>
>>> As for the European General Data Protection Regulation 2016/679 on the
>>> protection of natural persons with regard to the processing of personal
>>> data, we inform you that all the data we possess are object of treatement
>>> in the respect of the normative provided for by the cited GDPR.
>>>
>>> It is your right to be informed on which of your data are used and how;
>>> you may ask for their correction, cancellation or you may oppose to their
>>> use by written request sent by recorded delivery to The Microsoft Research
>>> – University of Trento Centre for Computational and Systems Biology Scarl,
>>> Piazza Manifattura 1, 38068 Rovereto (TN), Italy.
>>>
>>>
-- 
Danilo Tomasoni
COSBI

As for the European General Data Protection Regulation 2016/679 on the protection of natural persons with regard to the processing of personal data, we inform you that all the data we possess are object of treatement in the respect of the normative provided for by the cited GDPR.

It is your right to be informed on which of your data are used and how; you may ask for their correction, cancellation or you may oppose to their use by written request sent by recorded delivery to The Microsoft Research – University of Trento Centre for Computational and Systems Biology Scarl, Piazza Manifattura 1, 38068 Rovereto (TN), Italy.

Re: misteriuos nullpointerexception while adding documents

Posted by Erick Erickson <er...@gmail.com>.
bq. I disabled autocommit (both soft and hard), but used to work with a
previous version of the schema.


First, did you _change_ the schema without
1> deleting all the docs in the index
2> reindexing everything

or better, indexing to a new collection and aliasing to it?

If you changed the schema and continued indexing to the
collection _at any time in the past_ you may have
inconsistent merged segments. The only way to fix this
is to re-index, and I strongly recommend to a new
collection.

Second:
do _not_ disable, commits and index for a long time.
1> your tlog will grow forever until you do a hard commit
2> certain internal Solr structures grow until a new searcher
    is opened, either soft commit or hard-commit-with-opensearcher-true

https://lucidworks.com/2013/08/23/understanding-transaction-logs-softcommit-and-commit-in-sorlcloud/

Best,
Erick

On Tue, Feb 12, 2019 at 1:03 AM MUNENDRA S.N <sn...@gmail.com> wrote:
>
> Are you trying to set some field to null in the request?? Also, is that
> particular field numeric, doc valued enabled and stored set to false??
> Sharing more details would help here, specifically update request and
> schema for those fields.
>
> Regards,
> Munendra S N
>
>
> On Tue, Feb 12, 2019 at 2:24 PM Danilo Tomasoni <to...@cosbi.eu> wrote:
>
> > Hello all,
> >
> > I get this error while uploading my documents with 'set' modifier in
> > json format.
> >
> > My solr version is 7.3.1.
> >
> > I disabled autocommit (both soft and hard), but used to work with a
> > previous version of the schema.
> >
> > Someone have any clue on what's going on here?
> >
> > I can't reproduce the issue indexing locally on another solr 7.3.1
> > instance, I get this error only in the production instance.
> >
> > Thank you
> >
> > Danilo
> >
> >
> > ======== This is the error I get from client ========
> >
> >
> > {
> >    "responseHeader":{
> >      "status":500,
> >      "QTime":33},
> >    "error":{
> >      "trace":"
> >
> > java.lang.NullPointerException
> >      at org.apache.solr.update.UpdateLog.lookup(UpdateLog.java:971)
> >      at
> >
> > org.apache.solr.handler.component.RealTimeGetComponent.getInputDocumentFromTlog(RealTimeGetComponent.java:537)
> >      at
> >
> > org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:617)
> >      at
> >
> > org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:594)
> >      at
> >
> > org.apache.solr.update.processor.DistributedUpdateProcessor.getUpdatedDocument(DistributedUpdateProcessor.java:1330)
> >      at
> >
> > org.apache.solr.update.processor.DistributedUpdateProcessor.versionAdd(DistributedUpdateProcessor.java:1049)
> >      at
> >
> > org.apache.solr.update.processor.DistributedUpdateProcessor.processAdd(DistributedUpdateProcessor.java:633)
> >      at
> >
> > org.apache.solr.update.processor.LogUpdateProcessorFactory$LogUpdateProcessor.processAdd(LogUpdateProcessorFactory.java:103)
> >      at
> >
> > org.apache.solr.update.processor.UpdateRequestProcessor.processAdd(UpdateRequestProcessor.java:55)
> >      at
> >
> > org.apache.solr.update.processor.FieldMutatingUpdateProcessor.processAdd(FieldMutatingUpdateProcessor.java:118)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:501)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
> >      at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
> >      at
> >
> > org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
> >      at
> >
> > org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
> >      at
> >
> > org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
> >      at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
> >      at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
> >      at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >      at
> >
> > org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >      at
> > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >      at
> > org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >      at
> > org.eclipse.jetty.io
> > .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >      at
> > org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >      at java.lang.Thread.run(Thread.java:748)
> > "
> >
> > }
> >
> >
> >   ======= this is the error I see in solr.log ===============
> >
> >
> > 2019-02-12 08:43:01.592 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.u.p.LogUpdateProcessorFactory [COSBIBioIndex]  webapp=/solr
> > path=/update/json params={}{add=[PUBMEDPMID24951927
> > (1625251880396390400), PUBMEDPMID19328818 (1625251880437284864),
> > PUBMEDPMID24304416 (1625251880442527744), PUBMEDPMID24398789
> > (1625251880446722048), PUBMEDPMID23111281 (1625251880455110656),
> > PUBMEDPMID26933085 (1625251880464547840), PUBMEDPMID18635358
> > (1625251880471887872), PUBMEDPMID26856594 (1625251880472936448),
> > PUBMEDPMID21803289 (1625251880479227904), PUBMEDPMID25722448
> > (1625251880487616512), ... (194 adds)]} 0 5567
> > 2019-02-12 08:43:01.594 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.h.RequestHandlerBase org.eclipse.jetty.io.EofException: Early EOF
> >      at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
> >      at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
> >      at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
> >      at
> >
> > org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
> >      at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
> >      at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
> >      at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
> >      at java.io.InputStreamReader.read(InputStreamReader.java:184)
> >      at org.noggit.JSONParser.fill(JSONParser.java:208)
> >      at org.noggit.JSONParser.getMore(JSONParser.java:215)
> >      at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
> >      at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
> >      at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
> >      at org.noggit.JSONParser.getString(JSONParser.java:1142)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
> >      at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
> >      at
> >
> > org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
> >      at
> >
> > org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
> >      at
> >
> > org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
> >      at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
> >      at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
> >      at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >      at
> >
> > org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >      at
> > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >      at
> > org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >      at
> > org.eclipse.jetty.io
> > .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >      at org.eclipse.jetty.io
> > .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >      at
> >
> > org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >      at java.lang.Thread.run(Thread.java:748)
> >
> > 2019-02-12 08:43:01.599 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.s.HttpSolrCall null:org.eclipse.jetty.io.EofException: Early EOF
> >      at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
> >      at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
> >      at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
> >      at
> >
> > org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
> >      at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
> >      at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
> >      at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
> >      at java.io.InputStreamReader.read(InputStreamReader.java:184)
> >      at org.noggit.JSONParser.fill(JSONParser.java:208)
> >      at org.noggit.JSONParser.getMore(JSONParser.java:215)
> >      at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
> >      at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
> >      at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
> >      at org.noggit.JSONParser.getString(JSONParser.java:1142)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
> >      at
> >
> > org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
> >      at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
> >      at
> >
> > org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
> >      at
> >
> > org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
> >      at
> >
> > org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
> >      at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
> >      at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
> >      at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >      at
> >
> > org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >      at
> > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >      at
> > org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >      at
> > org.eclipse.jetty.io
> > .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >      at org.eclipse.jetty.io
> > .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >      at
> >
> > org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >      at java.lang.Thread.run(Thread.java:748)
> >
> > 2019-02-12 08:43:01.599 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.c.SolrCore [COSBIBioIndex]  CLOSING SolrCore
> > org.apache.solr.core.SolrCore@44e058fb
> > 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.m.SolrMetricManager Closing metric reporters for
> > registry=solr.core.COSBIBioIndex, tag=1155553531
> > 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.u.DirectUpdateHandler2 Committing on IndexWriter close.
> > 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.u.SolrIndexWriter Calling setCommitData with
> > IW:org.apache.solr.update.SolrIndexWriter@13750f6d commitCommandVersion:0
> > 2019-02-12 08:43:02.915 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.u.DirectUpdateHandler2 Error in final commit
> > java.lang.NoClassDefFoundError:
> > org/apache/lucene/index/BufferedUpdatesStream$ApplyDeletesResult
> >      at
> >
> > org.apache.lucene.index.BufferedUpdatesStream.closeSegmentStates(BufferedUpdatesStream.java:368)
> >      at
> >
> > org.apache.lucene.index.FrozenBufferedUpdates.finishApply(FrozenBufferedUpdates.java:402)
> >      at
> >
> > org.apache.lucene.index.FrozenBufferedUpdates.apply(FrozenBufferedUpdates.java:327)
> >      at
> >
> > org.apache.lucene.index.DocumentsWriter$ResolveUpdatesEvent.process(DocumentsWriter.java:740)
> >      at
> > org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5106)
> >      at
> > org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5096)
> >      at
> >
> > org.apache.lucene.index.IndexWriter.prepareCommitInternal(IndexWriter.java:3258)
> >      at
> > org.apache.lucene.index.IndexWriter.commitInternal(IndexWriter.java:3458)
> >      at org.apache.lucene.index.IndexWriter.commit(IndexWriter.java:3423)
> >      at
> >
> > org.apache.solr.update.DirectUpdateHandler2.closeWriter(DirectUpdateHandler2.java:875)
> >      at
> >
> > org.apache.solr.update.DefaultSolrCoreState.closeIndexWriter(DefaultSolrCoreState.java:105)
> >      at
> >
> > org.apache.solr.update.DefaultSolrCoreState.close(DefaultSolrCoreState.java:402)
> >      at
> >
> > org.apache.solr.update.SolrCoreState.decrefSolrCoreState(SolrCoreState.java:83)
> >      at org.apache.solr.core.SolrCore.close(SolrCore.java:1564)
> >      at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >      at
> >
> > org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >      at
> > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >      at
> > org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >      at
> > org.eclipse.jetty.io
> > .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >      at org.eclipse.jetty.io
> > .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >      at
> >
> > org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >      at java.lang.Thread.run(Thread.java:748)
> > Caused by: java.lang.ClassNotFoundException:
> > org.apache.lucene.index.BufferedUpdatesStream$ApplyDeletesResult
> >      at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >      at
> >
> > org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >      ... 50 more
> > 2019-02-12 08:43:02.920 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> > o.a.s.c.SolrCore java.lang.NoClassDefFoundError:
> > org/apache/solr/core/ShutdownAwareDirectory
> >      at
> >
> > org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:298)
> >      at
> >
> > org.apache.solr.core.CachingDirectoryFactory.closeCacheValue(CachingDirectoryFactory.java:264)
> >      at
> >
> > org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:194)
> >      at org.apache.solr.core.SolrCore.close(SolrCore.java:1633)
> >      at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
> >      at
> >
> > org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
> >      at
> >
> > org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
> >      at
> > org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
> >      at
> > org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
> >      at
> >
> > org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
> >      at
> >
> > org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
> >      at
> >
> > org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at
> >
> > org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
> >      at
> >
> > org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
> >      at org.eclipse.jetty.server.Server.handle(Server.java:530)
> >      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
> >      at
> > org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
> >      at
> > org.eclipse.jetty.io
> > .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
> >      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
> >      at org.eclipse.jetty.io
> > .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
> >      at
> >
> > org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
> >      at
> >
> > org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
> >      at
> >
> > org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
> >      at java.lang.Thread.run(Thread.java:748)
> > Caused by: java.lang.ClassNotFoundException:
> > org.apache.solr.core.ShutdownAwareDirectory
> >      at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >      at
> >
> > org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
> >      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> >      ... 40 more
> >
> >
> > --
> > Danilo Tomasoni
> > COSBI
> >
> > As for the European General Data Protection Regulation 2016/679 on the
> > protection of natural persons with regard to the processing of personal
> > data, we inform you that all the data we possess are object of treatement
> > in the respect of the normative provided for by the cited GDPR.
> >
> > It is your right to be informed on which of your data are used and how;
> > you may ask for their correction, cancellation or you may oppose to their
> > use by written request sent by recorded delivery to The Microsoft Research
> > – University of Trento Centre for Computational and Systems Biology Scarl,
> > Piazza Manifattura 1, 38068 Rovereto (TN), Italy.
> >
> >

Re: misteriuos nullpointerexception while adding documents

Posted by "MUNENDRA S.N" <sn...@gmail.com>.
Are you trying to set some field to null in the request?? Also, is that
particular field numeric, doc valued enabled and stored set to false??
Sharing more details would help here, specifically update request and
schema for those fields.

Regards,
Munendra S N


On Tue, Feb 12, 2019 at 2:24 PM Danilo Tomasoni <to...@cosbi.eu> wrote:

> Hello all,
>
> I get this error while uploading my documents with 'set' modifier in
> json format.
>
> My solr version is 7.3.1.
>
> I disabled autocommit (both soft and hard), but used to work with a
> previous version of the schema.
>
> Someone have any clue on what's going on here?
>
> I can't reproduce the issue indexing locally on another solr 7.3.1
> instance, I get this error only in the production instance.
>
> Thank you
>
> Danilo
>
>
> ======== This is the error I get from client ========
>
>
> {
>    "responseHeader":{
>      "status":500,
>      "QTime":33},
>    "error":{
>      "trace":"
>
> java.lang.NullPointerException
>      at org.apache.solr.update.UpdateLog.lookup(UpdateLog.java:971)
>      at
>
> org.apache.solr.handler.component.RealTimeGetComponent.getInputDocumentFromTlog(RealTimeGetComponent.java:537)
>      at
>
> org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:617)
>      at
>
> org.apache.solr.handler.component.RealTimeGetComponent.getInputDocument(RealTimeGetComponent.java:594)
>      at
>
> org.apache.solr.update.processor.DistributedUpdateProcessor.getUpdatedDocument(DistributedUpdateProcessor.java:1330)
>      at
>
> org.apache.solr.update.processor.DistributedUpdateProcessor.versionAdd(DistributedUpdateProcessor.java:1049)
>      at
>
> org.apache.solr.update.processor.DistributedUpdateProcessor.processAdd(DistributedUpdateProcessor.java:633)
>      at
>
> org.apache.solr.update.processor.LogUpdateProcessorFactory$LogUpdateProcessor.processAdd(LogUpdateProcessorFactory.java:103)
>      at
>
> org.apache.solr.update.processor.UpdateRequestProcessor.processAdd(UpdateRequestProcessor.java:55)
>      at
>
> org.apache.solr.update.processor.FieldMutatingUpdateProcessor.processAdd(FieldMutatingUpdateProcessor.java:118)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:501)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
>      at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
>      at
>
> org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
>      at
>
> org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
>      at
>
> org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
>      at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
>      at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
>      at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
>      at
>
> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
>      at
>
> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
>      at
>
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
>      at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>      at
> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
>      at
>
> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
>      at
> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
>      at
>
> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
>      at
>
> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at
>
> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at org.eclipse.jetty.server.Server.handle(Server.java:530)
>      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
>      at
> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
>      at
> org.eclipse.jetty.io
> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
>      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
>      at
> org.eclipse.jetty.io.ChannelEndPoint$2.run(ChannelEndPoint.java:124)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
>      at
>
> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
>      at
>
> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
>      at java.lang.Thread.run(Thread.java:748)
> "
>
> }
>
>
>   ======= this is the error I see in solr.log ===============
>
>
> 2019-02-12 08:43:01.592 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> o.a.s.u.p.LogUpdateProcessorFactory [COSBIBioIndex]  webapp=/solr
> path=/update/json params={}{add=[PUBMEDPMID24951927
> (1625251880396390400), PUBMEDPMID19328818 (1625251880437284864),
> PUBMEDPMID24304416 (1625251880442527744), PUBMEDPMID24398789
> (1625251880446722048), PUBMEDPMID23111281 (1625251880455110656),
> PUBMEDPMID26933085 (1625251880464547840), PUBMEDPMID18635358
> (1625251880471887872), PUBMEDPMID26856594 (1625251880472936448),
> PUBMEDPMID21803289 (1625251880479227904), PUBMEDPMID25722448
> (1625251880487616512), ... (194 adds)]} 0 5567
> 2019-02-12 08:43:01.594 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> o.a.s.h.RequestHandlerBase org.eclipse.jetty.io.EofException: Early EOF
>      at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
>      at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
>      at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
>      at
>
> org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
>      at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
>      at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
>      at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
>      at java.io.InputStreamReader.read(InputStreamReader.java:184)
>      at org.noggit.JSONParser.fill(JSONParser.java:208)
>      at org.noggit.JSONParser.getMore(JSONParser.java:215)
>      at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
>      at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
>      at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
>      at org.noggit.JSONParser.getString(JSONParser.java:1142)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
>      at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
>      at
>
> org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
>      at
>
> org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
>      at
>
> org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
>      at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
>      at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
>      at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
>      at
>
> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
>      at
>
> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
>      at
>
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
>      at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>      at
> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
>      at
>
> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
>      at
> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
>      at
>
> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
>      at
>
> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at
>
> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at org.eclipse.jetty.server.Server.handle(Server.java:530)
>      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
>      at
> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
>      at
> org.eclipse.jetty.io
> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
>      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
>      at org.eclipse.jetty.io
> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
>      at
>
> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
>      at
>
> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
>      at
>
> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
>      at java.lang.Thread.run(Thread.java:748)
>
> 2019-02-12 08:43:01.599 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> o.a.s.s.HttpSolrCall null:org.eclipse.jetty.io.EofException: Early EOF
>      at org.eclipse.jetty.server.HttpInput$3.getError(HttpInput.java:1126)
>      at org.eclipse.jetty.server.HttpInput$3.noContent(HttpInput.java:1115)
>      at org.eclipse.jetty.server.HttpInput.read(HttpInput.java:309)
>      at
>
> org.apache.commons.io.input.ProxyInputStream.read(ProxyInputStream.java:100)
>      at sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:284)
>      at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)
>      at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)
>      at java.io.InputStreamReader.read(InputStreamReader.java:184)
>      at org.noggit.JSONParser.fill(JSONParser.java:208)
>      at org.noggit.JSONParser.getMore(JSONParser.java:215)
>      at org.noggit.JSONParser.readStringChars2(JSONParser.java:709)
>      at org.noggit.JSONParser.readStringChars(JSONParser.java:689)
>      at org.noggit.JSONParser.getStringChars(JSONParser.java:1154)
>      at org.noggit.JSONParser.getString(JSONParser.java:1142)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseSingleFieldValue(JsonLoader.java:637)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseArrayFieldValue(JsonLoader.java:667)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseNormalFieldValue(JsonLoader.java:625)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseExtendedFieldValue(JsonLoader.java:599)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseFieldValue(JsonLoader.java:557)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.parseDoc(JsonLoader.java:543)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.handleAdds(JsonLoader.java:500)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.processUpdate(JsonLoader.java:145)
>      at
>
> org.apache.solr.handler.loader.JsonLoader$SingleThreadedJsonLoader.load(JsonLoader.java:121)
>      at org.apache.solr.handler.loader.JsonLoader.load(JsonLoader.java:84)
>      at
>
> org.apache.solr.handler.UpdateRequestHandler$1.load(UpdateRequestHandler.java:97)
>      at
>
> org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentStreamHandlerBase.java:68)
>      at
>
> org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:195)
>      at org.apache.solr.core.SolrCore.execute(SolrCore.java:2503)
>      at org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:711)
>      at org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:517)
>      at
>
> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:384)
>      at
>
> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
>      at
>
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
>      at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>      at
> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
>      at
>
> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
>      at
> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
>      at
>
> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
>      at
>
> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at
>
> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at org.eclipse.jetty.server.Server.handle(Server.java:530)
>      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
>      at
> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
>      at
> org.eclipse.jetty.io
> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
>      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
>      at org.eclipse.jetty.io
> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
>      at
>
> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
>      at
>
> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
>      at
>
> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
>      at java.lang.Thread.run(Thread.java:748)
>
> 2019-02-12 08:43:01.599 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> o.a.s.c.SolrCore [COSBIBioIndex]  CLOSING SolrCore
> org.apache.solr.core.SolrCore@44e058fb
> 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> o.a.s.m.SolrMetricManager Closing metric reporters for
> registry=solr.core.COSBIBioIndex, tag=1155553531
> 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> o.a.s.u.DirectUpdateHandler2 Committing on IndexWriter close.
> 2019-02-12 08:43:01.600 INFO  (qtp2137589296-19) [ x:COSBIBioIndex]
> o.a.s.u.SolrIndexWriter Calling setCommitData with
> IW:org.apache.solr.update.SolrIndexWriter@13750f6d commitCommandVersion:0
> 2019-02-12 08:43:02.915 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> o.a.s.u.DirectUpdateHandler2 Error in final commit
> java.lang.NoClassDefFoundError:
> org/apache/lucene/index/BufferedUpdatesStream$ApplyDeletesResult
>      at
>
> org.apache.lucene.index.BufferedUpdatesStream.closeSegmentStates(BufferedUpdatesStream.java:368)
>      at
>
> org.apache.lucene.index.FrozenBufferedUpdates.finishApply(FrozenBufferedUpdates.java:402)
>      at
>
> org.apache.lucene.index.FrozenBufferedUpdates.apply(FrozenBufferedUpdates.java:327)
>      at
>
> org.apache.lucene.index.DocumentsWriter$ResolveUpdatesEvent.process(DocumentsWriter.java:740)
>      at
> org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5106)
>      at
> org.apache.lucene.index.IndexWriter.processEvents(IndexWriter.java:5096)
>      at
>
> org.apache.lucene.index.IndexWriter.prepareCommitInternal(IndexWriter.java:3258)
>      at
> org.apache.lucene.index.IndexWriter.commitInternal(IndexWriter.java:3458)
>      at org.apache.lucene.index.IndexWriter.commit(IndexWriter.java:3423)
>      at
>
> org.apache.solr.update.DirectUpdateHandler2.closeWriter(DirectUpdateHandler2.java:875)
>      at
>
> org.apache.solr.update.DefaultSolrCoreState.closeIndexWriter(DefaultSolrCoreState.java:105)
>      at
>
> org.apache.solr.update.DefaultSolrCoreState.close(DefaultSolrCoreState.java:402)
>      at
>
> org.apache.solr.update.SolrCoreState.decrefSolrCoreState(SolrCoreState.java:83)
>      at org.apache.solr.core.SolrCore.close(SolrCore.java:1564)
>      at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
>      at
>
> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
>      at
>
> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
>      at
>
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
>      at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>      at
> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
>      at
>
> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
>      at
> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
>      at
>
> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
>      at
>
> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at
>
> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at org.eclipse.jetty.server.Server.handle(Server.java:530)
>      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
>      at
> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
>      at
> org.eclipse.jetty.io
> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
>      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
>      at org.eclipse.jetty.io
> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
>      at
>
> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
>      at
>
> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
>      at
>
> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
>      at java.lang.Thread.run(Thread.java:748)
> Caused by: java.lang.ClassNotFoundException:
> org.apache.lucene.index.BufferedUpdatesStream$ApplyDeletesResult
>      at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
>      at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
>      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>      at
>
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
>      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>      ... 50 more
> 2019-02-12 08:43:02.920 ERROR (qtp2137589296-19) [ x:COSBIBioIndex]
> o.a.s.c.SolrCore java.lang.NoClassDefFoundError:
> org/apache/solr/core/ShutdownAwareDirectory
>      at
>
> org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:298)
>      at
>
> org.apache.solr.core.CachingDirectoryFactory.closeCacheValue(CachingDirectoryFactory.java:264)
>      at
>
> org.apache.solr.core.CachingDirectoryFactory.close(CachingDirectoryFactory.java:194)
>      at org.apache.solr.core.SolrCore.close(SolrCore.java:1633)
>      at org.apache.solr.servlet.HttpSolrCall.destroy(HttpSolrCall.java:570)
>      at
>
> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:402)
>      at
>
> org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:330)
>      at
>
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1629)
>      at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:533)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>      at
> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:190)
>      at
>
> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:1595)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextHandle(ScopedHandler.java:188)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1253)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:168)
>      at
> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:473)
>      at
>
> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:1564)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.nextScope(ScopedHandler.java:166)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1155)
>      at
>
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>      at
>
> org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:219)
>      at
>
> org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:126)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at
>
> org.eclipse.jetty.rewrite.handler.RewriteHandler.handle(RewriteHandler.java:335)
>      at
>
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:132)
>      at org.eclipse.jetty.server.Server.handle(Server.java:530)
>      at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:347)
>      at
> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:256)
>      at
> org.eclipse.jetty.io
> .AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:279)
>      at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:102)
>      at org.eclipse.jetty.io
> .ChannelEndPoint$2.run(ChannelEndPoint.java:124)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.doProduce(EatWhatYouKill.java:247)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.produce(EatWhatYouKill.java:140)
>      at
>
> org.eclipse.jetty.util.thread.strategy.EatWhatYouKill.run(EatWhatYouKill.java:131)
>      at
>
> org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:382)
>      at
>
> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:708)
>      at
>
> org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:626)
>      at java.lang.Thread.run(Thread.java:748)
> Caused by: java.lang.ClassNotFoundException:
> org.apache.solr.core.ShutdownAwareDirectory
>      at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
>      at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
>      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>      at
>
> org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:565)
>      at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>      ... 40 more
>
>
> --
> Danilo Tomasoni
> COSBI
>
> As for the European General Data Protection Regulation 2016/679 on the
> protection of natural persons with regard to the processing of personal
> data, we inform you that all the data we possess are object of treatement
> in the respect of the normative provided for by the cited GDPR.
>
> It is your right to be informed on which of your data are used and how;
> you may ask for their correction, cancellation or you may oppose to their
> use by written request sent by recorded delivery to The Microsoft Research
> – University of Trento Centre for Computational and Systems Biology Scarl,
> Piazza Manifattura 1, 38068 Rovereto (TN), Italy.
>
>