svn commit: r1400294 [1/5] - in /airavata/trunk: ./ modules/airavata-client/ modules/commons/gfac-schema/ modules/commons/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/ modules/commons/provenance-registry/ modules/commons/utils/ modul...

[la...@apache.org]

Author: lahiru
Date: Fri Oct 19 21:10:06 2012
New Revision: 1400294

URL: http://svn.apache.org/viewvc?rev=1400294&view=rev
Log:
changng logging in to log4j.

Modified:
    airavata/trunk/modules/airavata-client/pom.xml
    airavata/trunk/modules/commons/gfac-schema/pom.xml
    airavata/trunk/modules/commons/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/WSDLGenerator.java
    airavata/trunk/modules/commons/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/WSPolicyGenerator.java
    airavata/trunk/modules/commons/provenance-registry/pom.xml
    airavata/trunk/modules/commons/utils/pom.xml
    airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/BrowserLauncher.java
    airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/IOUtil.java
    airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/ServiceUtils.java
    airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/WSDLUtil.java
    airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/XMLUtil.java
    airavata/trunk/modules/commons/workflow-execution-context/pom.xml
    airavata/trunk/modules/commons/workflow-execution-context/src/main/java/org/apache/airavata/common/workflow/execution/context/WorkflowContextHeaderBuilder.java
    airavata/trunk/modules/commons/workflow-tracking/pom.xml
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/LeadContextHeader.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/LeadCrosscutParametersUtil.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/XBeansUtil.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/AbstractNotifier.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/NotifierFactory.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/client/LeadNotificationManager.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/client/Subscription.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/GenericNotifierImpl.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/publish/AbstractPublisher.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/publish/WSMPublisher.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/subscription/LeadNotificationHandler.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/subscription/MessageBoxNotificationHandler.java
    airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/util/Timer.java
    airavata/trunk/modules/distribution/pom.xml
    airavata/trunk/modules/distribution/src/main/assembly/bin-assembly.xml
    airavata/trunk/modules/gfac-axis2/pom.xml
    airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/GFacService.java
    airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/dispatchers/GFacURIBasedDispatcher.java
    airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/reciever/GFacMessageReciever.java
    airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/util/WSDLUtil.java
    airavata/trunk/modules/gfac-core/pom.xml
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/GfacAPI.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/context/security/impl/GSISecurityContext.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/context/security/impl/utils/MyProxyManager.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/post/GridFtpOutputStaging.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/post/OutputRegister.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/pre/GridFtpInputStaging.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/pre/HttpInputStaging.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/external/GridFtp.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/factory/AbstractServiceFactory.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/notification/impl/DefaultNotifier.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/notification/impl/LoggingNotification.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/provider/AbstractProvider.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/provider/utils/GramRSLGenerator.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/provider/utils/InputStreamToFileWriter.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/provider/utils/JobSubmissionListener.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/scheduler/impl/SchedulerImpl.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/services/impl/AbstractSimpleService.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/services/impl/PropertiesBasedServiceImpl.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/utils/GfacUtils.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/utils/GridFTPContactInfo.java
    airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/utils/LogUtils.java
    airavata/trunk/modules/registry/airavata-jpa-registry/pom.xml
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/ResourceUtils.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/impl/AiravataJPARegistry.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/AiravataRegistryConnectionDataProviderImpl.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ApplicationDescriptorResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ConfigurationResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ExperimentDataResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ExperimentDataRetriever.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ExperimentMetadataResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ExperimentResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/GatewayResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/GramDataResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/HostDescriptorResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/NodeDataResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ProjectResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/PublishWorkflowResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/ServiceDescriptorResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/UserResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/UserWorkflowResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/Utils.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/WorkerResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/main/java/org/apache/airavata/persistance/registry/jpa/resources/WorkflowDataResource.java
    airavata/trunk/modules/registry/airavata-jpa-registry/src/test/java/org/apache/airavata/persistance/registry/jpa/util/Initialize.java
    airavata/trunk/modules/registry/airavata-registry-service/pom.xml
    airavata/trunk/modules/registry/airavata-registry-service/src/main/java/org/apache/airavata/registry/services/RegistryService.java
    airavata/trunk/modules/registry/airavata-registry-service/src/main/java/org/apache/airavata/registry/services/utils/ConnectionPool.java
    airavata/trunk/modules/registry/airavata-registry-service/src/main/java/org/apache/airavata/registry/services/utils/DatabaseCreator.java
    airavata/trunk/modules/registry/airavata-registry-service/src/main/java/org/apache/airavata/registry/services/utils/JdbcStorage.java
    airavata/trunk/modules/registry/airavata-registry-test/src/test/java/org/apache/airavata/registry/api/test/util/Initialize.java
    airavata/trunk/modules/registry/registry-api/pom.xml
    airavata/trunk/modules/registry/registry-api/src/main/java/org/apache/airavata/registry/api/util/RegistryUtils.java
    airavata/trunk/modules/test-suite/pom.xml
    airavata/trunk/modules/test-suite/src/test/java/org/apache/airavata/test/suite/workflowtracking/tests/messagebox/MessagePullerTest.java
    airavata/trunk/modules/test-suite/src/test/java/org/apache/airavata/test/suite/workflowtracking/tests/messagebox/MultipleSubscriptionForMessageBoxTest.java
    airavata/trunk/modules/test-suite/src/test/java/org/apache/airavata/test/suite/workflowtracking/tests/messagebox/SubscriberThread.java
    airavata/trunk/modules/test-suite/src/test/java/org/apache/airavata/test/suite/workflowtracking/tests/messagebox/restart/MessageBoxClientRestartTest.java
    airavata/trunk/modules/test-suite/src/test/java/org/apache/airavata/test/suite/workflowtracking/tests/messagebox/restart/MessageBoxCreateThread.java
    airavata/trunk/modules/workflow-model/workflow-model-core/pom.xml
    airavata/trunk/modules/workflow-model/workflow-model-core/src/main/java/org/apache/airavata/workflow/model/component/registry/JCRComponentRegistry.java
    airavata/trunk/modules/workflow-model/workflow-model-core/src/main/java/org/apache/airavata/workflow/model/component/registry/WebComponentRegistry.java
    airavata/trunk/modules/workflow-model/workflow-model-core/src/main/java/org/apache/airavata/workflow/model/component/ws/WSComponent.java
    airavata/trunk/modules/workflow-model/workflow-model-core/src/main/java/org/apache/airavata/workflow/model/gpel/script/BPELScript.java
    airavata/trunk/modules/workflow-model/workflow-model-core/src/main/java/org/apache/airavata/workflow/model/graph/impl/GraphImpl.java
    airavata/trunk/modules/workflow-model/workflow-model-core/src/main/java/org/apache/airavata/workflow/model/graph/impl/NodeImpl.java
    airavata/trunk/modules/workflow-model/workflow-model-core/src/main/java/org/apache/airavata/workflow/model/graph/system/ConstantNode.java
    airavata/trunk/modules/workflow-model/workflow-model-core/src/main/java/org/apache/airavata/workflow/model/graph/system/InputNode.java
    airavata/trunk/modules/workflow-model/workflow-model-core/src/main/java/org/apache/airavata/workflow/model/graph/system/S3InputNode.java
    airavata/trunk/modules/workflow-model/workflow-model-core/src/main/java/org/apache/airavata/workflow/model/wf/Workflow.java
    airavata/trunk/modules/ws-messenger/client/pom.xml
    airavata/trunk/modules/ws-messenger/client/src/main/java/org/apache/airavata/wsmg/client/CommonMsgBrokerClient.java
    airavata/trunk/modules/ws-messenger/client/src/main/java/org/apache/airavata/wsmg/client/WsntCreatePublishReg.java
    airavata/trunk/modules/ws-messenger/client/src/main/java/org/apache/airavata/wsmg/client/WsrfResourceStub.java
    airavata/trunk/modules/ws-messenger/client/src/main/java/org/apache/airavata/wsmg/client/msgbox/MessagePuller.java
    airavata/trunk/modules/ws-messenger/client/src/main/java/org/apache/airavata/wsmg/gui/NotificationViewerFrame.java
    airavata/trunk/modules/ws-messenger/client/src/main/java/org/apache/airavata/wsmg/gui/WsntViewerConsumerNotificationHandler.java
    airavata/trunk/modules/ws-messenger/client/src/main/java/org/apache/airavata/wsmg/msgbox/client/CreateMsgBox.java
    airavata/trunk/modules/ws-messenger/client/src/main/java/org/apache/airavata/wsmg/msgbox/client/DestroyMsgBox.java
    airavata/trunk/modules/ws-messenger/client/src/main/java/org/apache/airavata/wsmg/msgbox/client/MsgBoxClient.java
    airavata/trunk/modules/ws-messenger/client/src/main/java/org/apache/airavata/wsmg/msgbox/client/StoreMessage.java
    airavata/trunk/modules/ws-messenger/client/src/main/java/org/apache/airavata/wsmg/msgbox/client/TakeMessages.java
    airavata/trunk/modules/ws-messenger/commons/pom.xml
    airavata/trunk/modules/ws-messenger/commons/src/main/java/org/apache/airavata/wsmg/commons/storage/ConnectionPool.java
    airavata/trunk/modules/ws-messenger/commons/src/main/java/org/apache/airavata/wsmg/commons/storage/DatabaseCreator.java
    airavata/trunk/modules/ws-messenger/commons/src/main/java/org/apache/airavata/wsmg/commons/storage/JdbcStorage.java
    airavata/trunk/modules/ws-messenger/distribution/pom.xml
    airavata/trunk/modules/ws-messenger/messagebox/pom.xml
    airavata/trunk/modules/ws-messenger/messagebox/src/main/java/org/apache/airavata/wsmg/msgbox/MsgBoxServiceLifeCycle.java
    airavata/trunk/modules/ws-messenger/messagebox/src/main/java/org/apache/airavata/wsmg/msgbox/MsgBoxServiceMessageReceiverInOut.java
    airavata/trunk/modules/ws-messenger/messagebox/src/main/java/org/apache/airavata/wsmg/msgbox/MsgBoxServiceSkeleton.java
    airavata/trunk/modules/ws-messenger/messagebox/src/main/java/org/apache/airavata/wsmg/msgbox/Storage/dbpool/DatabaseStorageImpl.java
    airavata/trunk/modules/ws-messenger/messagebox/src/main/java/org/apache/airavata/wsmg/msgbox/Storage/dbpool/MessageBoxDB.java
    airavata/trunk/modules/ws-messenger/messagebox/src/main/java/org/apache/airavata/wsmg/msgbox/Storage/memory/InMemoryImpl.java
    airavata/trunk/modules/ws-messenger/messagebox/src/main/java/org/apache/airavata/wsmg/msgbox/StoreMessageHandler.java
    airavata/trunk/modules/ws-messenger/messagebroker/pom.xml
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/BrokerServiceLifeCycle.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/ConsumerListManager.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/NotificationProcessor.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/handler/PublishedMessageHandler.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/subscription/CleanupThread.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/subscription/SubscriptionManager.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/subscription/SubscriptionState.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/wseventing/WSEProcessingContextBuilder.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/wseventing/WSEProtocolSupport.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/wseventing/WSEventingMsgReceiver.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/wsnotification/WSNTProtocolSupport.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/wsnotification/WSNotificationMsgReceiver.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/broker/wsnotification/WSNotificationProcessingContextBuilder.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/commons/storage/WsmgPersistantStorage.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/commons/util/OMElementComparator.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/matching/XPath/YFilterInfo.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/matching/XPath/YFilterMessageMatcher.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/matching/simpleTopic/DirectWsntMessageMatcher.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/messenger/ConsumerUrlManager.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/messenger/DeliveryProcessor.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/messenger/OutGoingQueue.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/messenger/SenderUtils.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/messenger/protocol/impl/Axis2Protocol.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/messenger/strategy/impl/ConsumerHandler.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/messenger/strategy/impl/FixedParallelSender.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/messenger/strategy/impl/ParallelSender.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/main/java/org/apache/airavata/wsmg/messenger/strategy/impl/SerialSender.java
    airavata/trunk/modules/ws-messenger/messagebroker/src/test/java/org/apache/airavata/wsmg/performance_evaluator/rtt/Subscription.java
    airavata/trunk/modules/ws-messenger/pom.xml
    airavata/trunk/modules/xbaya-gui/pom.xml
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/XBaya.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/XBayaConfiguration.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/XBayaEngine.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/component/registry/ComponentRegistryLoader.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/core/generators/BPELFiler.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/core/generators/ImageFiler.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/core/generators/JythonFiler.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/core/generators/ScuflFiler.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/core/generators/WorkflowFiler.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/event/EventProducer.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/gfac/SimpleWSClient.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/DoWhileHandler.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorEventListener.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/interpretor/WorkflowInterpretorSkeleton.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/AsynchronousInvoker.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/EmbeddedGFacInvoker.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/GFacInvoker.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/GenericInvoker.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/ODEInvoker.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/SimpleInvoker.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/invoker/WorkflowInvokerWrapperForGFacInvoker.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/jython/lib/GFacServiceCreator.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/jython/lib/NotificationSender.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/jython/lib/ServiceNotificationSender.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/jython/runner/JythonClassLoader.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/jython/runner/JythonOneTimeRunnerImpl.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/lead/LEADTypes.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/lead/LEADWorkflowInvoker.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/lead/NotificationHandler.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/menues/tools/ToolsMenuItem.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/modifier/WorkflowModifier.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/monitor/Monitor.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/monitor/MonitorConfiguration.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/monitor/MonitorEventData.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/monitor/MonitorUtil.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/monitor/WsmgClient.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/myproxy/MyProxyClient.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/provenance/WorkflowNodeStatusUpdater.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/provenance/WorkflowStatusUpdater.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/taverna/TavernaRunnerWindow.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/BPELScriptTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/DSCTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/DSCUtilTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/GFacServiceCreaterTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/LEADWorkflowInvokerTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/MetadataTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/MyProxyTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/WSDLTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/WSIFTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/WorkflowModificationTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/WorkflowTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/XBayaSecurityTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/XBayaTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/XppTestCase.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/jython/JythonLibraryTest.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/AllServices.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/ServiceNotificationSender.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/adder/AdderClient.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/adder/AdderImpl.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/adder/AdderService.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/approver/ApproverClient.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/approver/ApproverImpl.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/approver/ApproverService.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/arrayadder/ArrayAdderClient.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/arrayadder/ArrayAdderImpl.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/arrayadder/ArrayAdderService.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/arraygen/ArrayGeneratorClient.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/arraygen/ArrayGeneratorImpl.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/arraygen/ArrayGeneratorService.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/echo/EchoClient.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/echo/EchoImpl.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/echo/EchoService.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/multiplier/MultiplierImpl.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/test/service/multiplier/MultiplierService.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/XBayaGUI.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/dialogs/AboutWindow.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/dialogs/ErrorWindow.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/dialogs/GridChemRunnerWindow.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/dialogs/JythonRunnerWindow.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/dialogs/TextWindow.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/dialogs/WaitDialog.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/dialogs/graph/dynamic/DynamicWorkflowRunnerWindow.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/dialogs/myproxy/MyProxyLoader.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/experiment/WorkflowInterpreterLaunchWindow.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/graph/GraphCanvas.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/graph/dynamic/DynamicNodeGUI.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/graph/subworkflow/SubWorkflowNodeGUI.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/graph/ws/WSNodeGUI.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/graph/ws/WorkflowNodeGUI.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/menues/EditMenuItem.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/menues/RegistryMenuItem.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/menues/RunMenuItem.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/menues/ViewMenuItem.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/menues/XBayaMenuItem.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/monitor/MonitorEventHandler.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/monitor/MonitorStarter.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/ui/widgets/component/ComponentSelector.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/util/XBayaUtil.java
    airavata/trunk/modules/xbaya-gui/src/main/java/org/apache/airavata/xbaya/workflow/WorkflowClient.java
    airavata/trunk/modules/xbaya-gui/src/test/java/org/apache/airavata/xbaya/interpreter/ComplexForEachWorkflowTest.java
    airavata/trunk/modules/xbaya-gui/src/test/java/org/apache/airavata/xbaya/interpreter/ComplexMathWorkflowTest.java
    airavata/trunk/modules/xbaya-gui/src/test/java/org/apache/airavata/xbaya/interpreter/CrossProductWorkflowTest.java
    airavata/trunk/modules/xbaya-gui/src/test/java/org/apache/airavata/xbaya/interpreter/ForEachWorkflowTest.java
    airavata/trunk/modules/xbaya-gui/src/test/java/org/apache/airavata/xbaya/interpreter/RegistryServiceTest.java
    airavata/trunk/modules/xbaya-gui/src/test/java/org/apache/airavata/xbaya/interpreter/SimpleForEachWorkflowTest.java
    airavata/trunk/modules/xbaya-gui/src/test/java/org/apache/airavata/xbaya/interpreter/SimpleMathWorkflowTest.java
    airavata/trunk/modules/xbaya-gui/src/test/java/org/apache/airavata/xbaya/interpreter/WorkflowTest.java
    airavata/trunk/modules/xbaya-gui/src/test/java/org/apache/airavata/xbaya/interpreter/WorkflowTrackingTest.java
    airavata/trunk/modules/xbaya-gui/src/test/java/org/apache/airavata/xbaya/interpreter/XBayaClientTest.java
    airavata/trunk/modules/xbaya-gui/src/test/java/org/apache/airavata/xbaya/interpreter/XBayaConsolidatedTestSuite.java
    airavata/trunk/pom.xml

Modified: airavata/trunk/modules/airavata-client/pom.xml
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/airavata-client/pom.xml?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/airavata-client/pom.xml (original)
+++ airavata/trunk/modules/airavata-client/pom.xml Fri Oct 19 21:10:06 2012
@@ -53,6 +53,11 @@
             <artifactId>airavata-jpa-registry</artifactId>
             <version>${project.version}</version>
         </dependency>
+        <dependency>
+                <groupId>log4j</groupId>
+                <artifactId>log4j</artifactId>
+        </dependency>
+            
     </dependencies>
 
 </project>

Modified: airavata/trunk/modules/commons/gfac-schema/pom.xml
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/gfac-schema/pom.xml?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/gfac-schema/pom.xml (original)
+++ airavata/trunk/modules/commons/gfac-schema/pom.xml Fri Oct 19 21:10:06 2012
@@ -40,8 +40,12 @@
             <version>1.1.4c</version>
         </dependency>
         <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-api</artifactId>
+                <groupId>log4j</groupId>
+                <artifactId>log4j</artifactId>
+        </dependency>
+         <dependency>
+                <groupId>commons-logging</groupId>
+                <artifactId>commons-logging</artifactId>
         </dependency>
         <!-- Testing -->
         <dependency>
@@ -49,11 +53,6 @@
             <artifactId>junit</artifactId>
             <scope>test</scope>
         </dependency>
-        <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-simple</artifactId>
-            <scope>test</scope>
-        </dependency>
     </dependencies>
     <build>
         <plugins>

Modified: airavata/trunk/modules/commons/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/WSDLGenerator.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/WSDLGenerator.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/WSDLGenerator.java (original)
+++ airavata/trunk/modules/commons/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/WSDLGenerator.java Fri Oct 19 21:10:06 2012
@@ -49,8 +49,8 @@ import org.apache.airavata.schemas.gfac.
 import org.apache.airavata.schemas.gfac.OutputParameterType;
 import org.apache.airavata.schemas.gfac.PortTypeType;
 import org.apache.airavata.schemas.gfac.ServiceDescriptionType;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 import org.w3c.dom.Attr;
 import org.w3c.dom.Comment;
 import org.w3c.dom.DOMImplementation;
@@ -78,7 +78,7 @@ import com.ibm.wsdl.extensions.soap.SOAP
 
 public class WSDLGenerator implements WSDLConstants {
     public static final String WSA_PREFIX = "wsa";
-    protected final Logger log = LoggerFactory.getLogger(this.getClass());
+    protected final Log log = LogFactory.getLog(this.getClass());
 
     public Hashtable generateWSDL(String serviceLocation, QName wsdlQName_, String security,
             ServiceDescriptionType serviceDesc, boolean abstractWSDL) throws GFacWSDLException {

Modified: airavata/trunk/modules/commons/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/WSPolicyGenerator.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/WSPolicyGenerator.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/WSPolicyGenerator.java (original)
+++ airavata/trunk/modules/commons/gfac-schema/src/main/java/org/apache/airavata/commons/gfac/wsdl/WSPolicyGenerator.java Fri Oct 19 21:10:06 2012
@@ -24,14 +24,14 @@ package org.apache.airavata.commons.gfac
 import javax.wsdl.extensions.UnknownExtensibilityElement;
 import javax.xml.namespace.QName;
 
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 import org.w3c.dom.DOMImplementation;
 import org.w3c.dom.Document;
 import org.w3c.dom.Element;
 
 public class WSPolicyGenerator implements WSDLConstants {
-    protected final Logger log = LoggerFactory.getLogger(this.getClass());
+    private static final Log log = LogFactory.getLog(WSPolicyGenerator.class);
 
     public static UnknownExtensibilityElement createServiceLevelPolicy(DOMImplementation dImpl, String policyID) {
         Document doc = dImpl.createDocument(WSP_NAMESPACE, "wsp:Policy", null);

Modified: airavata/trunk/modules/commons/provenance-registry/pom.xml
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/provenance-registry/pom.xml?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/provenance-registry/pom.xml (original)
+++ airavata/trunk/modules/commons/provenance-registry/pom.xml Fri Oct 19 21:10:06 2012
@@ -30,10 +30,6 @@
             <version>${jcr.version}</version>
         </dependency>
         <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-api</artifactId>
-        </dependency>
-        <dependency>
             <groupId>org.apache.airavata</groupId>
             <artifactId>airavata-gfac-schema-utils</artifactId>
             <version>${project.version}</version>
@@ -50,9 +46,8 @@
             <scope>test</scope>
         </dependency>
         <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-simple</artifactId>
-            <scope>test</scope>
+                <groupId>log4j</groupId>
+                <artifactId>log4j</artifactId>
         </dependency>
         <dependency>
             <groupId>org.apache.airavata</groupId>

Modified: airavata/trunk/modules/commons/utils/pom.xml
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/utils/pom.xml?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/utils/pom.xml (original)
+++ airavata/trunk/modules/commons/utils/pom.xml Fri Oct 19 21:10:06 2012
@@ -62,8 +62,8 @@
         
         <!-- Logging -->
         <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-api</artifactId>
+                <groupId>log4j</groupId>
+                <artifactId>log4j</artifactId>
         </dependency>
 
         <!-- Testing -->
@@ -72,11 +72,6 @@
             <artifactId>junit</artifactId>
             <scope>test</scope>
         </dependency>
-        <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-simple</artifactId>
-            <scope>test</scope>
-        </dependency>
     </dependencies>
 
 </project>

Modified: airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/BrowserLauncher.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/BrowserLauncher.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/BrowserLauncher.java (original)
+++ airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/BrowserLauncher.java Fri Oct 19 21:10:06 2012
@@ -27,8 +27,8 @@ import java.lang.reflect.Method;
 import java.net.URL;
 
 import org.apache.airavata.common.exception.UtilsException;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 /**
  * Opens URLs with the OS-specific browser.
@@ -37,7 +37,7 @@ public class BrowserLauncher {
 
     private static final String ERROR_MESSAGE = "Error while attempting to launch web browser";
 
-    private static Logger logger = LoggerFactory.getLogger(BrowserLauncher.class);
+    private static final Log logger = LogFactory.getLog(BrowserLauncher.class);
 
     /**
      * Opens a specified URL with the browser.

Modified: airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/IOUtil.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/IOUtil.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/IOUtil.java (original)
+++ airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/IOUtil.java Fri Oct 19 21:10:06 2012
@@ -33,12 +33,12 @@ import java.io.InputStreamReader;
 import java.io.Reader;
 import java.io.Writer;
 
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class IOUtil {
 
-    private static final Logger logger = LoggerFactory.getLogger(IOUtil.class);
+    private static final Log logger = LogFactory.getLog(IOUtil.class);
 
     /**
      * @param path

Modified: airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/ServiceUtils.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/ServiceUtils.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/ServiceUtils.java (original)
+++ airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/ServiceUtils.java Fri Oct 19 21:10:06 2012
@@ -32,11 +32,11 @@ import java.util.Properties;
 import org.apache.axis2.context.ConfigurationContext;
 import org.apache.axis2.description.TransportInDescription;
 import org.apache.axis2.util.Utils;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class ServiceUtils {
-    private static final Logger log = LoggerFactory.getLogger(ServiceUtils.class);
+    private static final Log log = LogFactory.getLog(ServiceUtils.class);
     private static final String REPOSITORY_PROPERTIES = "airavata-server.properties";
     public static final String IP = "ip";
     public static final String PORT = "port";

Modified: airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/WSDLUtil.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/WSDLUtil.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/WSDLUtil.java (original)
+++ airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/WSDLUtil.java Fri Oct 19 21:10:06 2012
@@ -33,8 +33,8 @@ import java.util.List;
 import javax.xml.namespace.QName;
 
 import org.apache.airavata.common.exception.UtilsException;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 import org.xmlpull.infoset.XmlAttribute;
 import org.xmlpull.infoset.XmlBuilderException;
 import org.xmlpull.infoset.XmlElement;
@@ -49,7 +49,7 @@ import xsul5.wsdl.WsdlUtil;
 
 public class WSDLUtil {
 
-    private static final Logger logger = LoggerFactory.getLogger(WSDLUtil.class);
+    private static final Log logger = LogFactory.getLog(WSDLUtil.class);
 
     /**
      * @param wsdlString

Modified: airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/XMLUtil.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/XMLUtil.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/XMLUtil.java (original)
+++ airavata/trunk/modules/commons/utils/src/main/java/org/apache/airavata/common/utils/XMLUtil.java Fri Oct 19 21:10:06 2012
@@ -41,8 +41,8 @@ import org.apache.airavata.common.except
 import org.apache.xmlbeans.XmlError;
 import org.apache.xmlbeans.XmlObject;
 import org.apache.xmlbeans.XmlOptions;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 import org.w3c.dom.*;
 import org.xml.sax.SAXException;
 import org.xmlpull.infoset.XmlDocument;
@@ -65,7 +65,7 @@ public class XMLUtil {
     public static final org.xmlpull.v1.builder.XmlInfosetBuilder BUILDER3 = org.xmlpull.v1.builder.XmlInfosetBuilder
             .newInstance(new MXParserFactory());
 
-    private static final Logger logger = LoggerFactory.getLogger(XMLUtil.class);
+    private static final Log logger = LogFactory.getLog(XMLUtil.class);
 
     private final static String PROPERTY_SERIALIZER_INDENTATION = "http://xmlpull.org/v1/doc/properties.html#serializer-indentation";
 

Modified: airavata/trunk/modules/commons/workflow-execution-context/pom.xml
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-execution-context/pom.xml?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-execution-context/pom.xml (original)
+++ airavata/trunk/modules/commons/workflow-execution-context/pom.xml Fri Oct 19 21:10:06 2012
@@ -39,7 +39,10 @@
             <artifactId>airavata-common-utils</artifactId>
             <version>${project.version}</version>
         </dependency>
-
+        <dependency>
+                <groupId>log4j</groupId>
+                <artifactId>log4j</artifactId>
+        </dependency>
         <!-- Testing -->
         <dependency>
             <groupId>junit</groupId>

Modified: airavata/trunk/modules/commons/workflow-execution-context/src/main/java/org/apache/airavata/common/workflow/execution/context/WorkflowContextHeaderBuilder.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-execution-context/src/main/java/org/apache/airavata/common/workflow/execution/context/WorkflowContextHeaderBuilder.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-execution-context/src/main/java/org/apache/airavata/common/workflow/execution/context/WorkflowContextHeaderBuilder.java (original)
+++ airavata/trunk/modules/commons/workflow-execution-context/src/main/java/org/apache/airavata/common/workflow/execution/context/WorkflowContextHeaderBuilder.java Fri Oct 19 21:10:06 2012
@@ -23,12 +23,12 @@ package org.apache.airavata.common.workf
 import org.apache.airavata.common.utils.XMLUtil;
 import org.apache.airavata.schemas.wec.*;
 import org.apache.xmlbeans.XmlException;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 import org.xmlpull.v1.builder.XmlElement;
 
 public class WorkflowContextHeaderBuilder {
-    protected static final Logger log = LoggerFactory.getLogger(WorkflowContextHeaderBuilder.class);
+    private static final Log log = LogFactory.getLog(WorkflowContextHeaderBuilder.class);
 
     private WorkflowMonitoringContextDocument.WorkflowMonitoringContext workflowMonitoringContext = null;
 

Modified: airavata/trunk/modules/commons/workflow-tracking/pom.xml
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/pom.xml?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/pom.xml (original)
+++ airavata/trunk/modules/commons/workflow-tracking/pom.xml Fri Oct 19 21:10:06 2012
@@ -84,8 +84,12 @@
 
         <!-- Logging -->
         <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-api</artifactId>
+                <groupId>log4j</groupId>
+                <artifactId>log4j</artifactId>
+        </dependency>
+         <dependency>
+                <groupId>commons-logging</groupId>
+                <artifactId>commons-logging</artifactId>
         </dependency>
 
         <!-- Testing -->

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/LeadContextHeader.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/LeadContextHeader.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/LeadContextHeader.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/LeadContextHeader.java Fri Oct 19 21:10:06 2012
@@ -33,8 +33,8 @@ import org.apache.axiom.om.OMNamespace;
 import org.apache.axis2.AxisFault;
 import org.apache.axis2.addressing.EndpointReference;
 import org.apache.axis2.addressing.EndpointReferenceHelper;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class LeadContextHeader {
 
@@ -286,7 +286,7 @@ public class LeadContextHeader {
         return lookupStringValue(NS, "OUTPUT_DATA_FILES_SUFFIX");
     }
 
-    private static final Logger logger = LoggerFactory.getLogger(LeadContextHeader.class);
+    private static final Log logger = LogFactory.getLog(LeadContextHeader.class);
     private static final OMFactory factory;
     public static final String GFAC_NAMESPACE = "http://org.apache.airavata/namespaces/2004/01/gFac";
     public static final QName TYPE;

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/LeadCrosscutParametersUtil.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/LeadCrosscutParametersUtil.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/LeadCrosscutParametersUtil.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/LeadCrosscutParametersUtil.java Fri Oct 19 21:10:06 2012
@@ -32,8 +32,8 @@ import org.apache.axiom.om.OMElement;
 import org.apache.axiom.om.OMFactory;
 import org.apache.axiom.om.OMNamespace;
 import org.apache.xmlbeans.XmlObject;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class LeadCrosscutParametersUtil {
     public LeadCrosscutParametersUtil(XmlObject xmlObjectToWrap) throws XMLStreamException {
@@ -280,7 +280,7 @@ public class LeadCrosscutParametersUtil 
             return Float.parseFloat(s);
     }
 
-    private static final Logger logger = LoggerFactory.getLogger(LeadCrosscutParametersUtil.class);
+    private static final Log logger = LogFactory.getLog(LeadCrosscutParametersUtil.class);
     public static final String FORECAST_TIME = "fcst_time";
     public static final String START_DATE = "start_date";
     public static final String START_HOUR = "start_hour";

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/XBeansUtil.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/XBeansUtil.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/XBeansUtil.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/commons/XBeansUtil.java Fri Oct 19 21:10:06 2012
@@ -28,13 +28,11 @@ import javax.xml.stream.XMLStreamExcepti
 import org.apache.axiom.om.OMElement;
 import org.apache.xmlbeans.XmlObject;
 import org.apache.xmlbeans.XmlOptions;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class XBeansUtil {
 
-    Logger logger = LoggerFactory.getLogger(XBeansUtil.class);
-
     public XBeansUtil() {
     }
 

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/AbstractNotifier.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/AbstractNotifier.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/AbstractNotifier.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/AbstractNotifier.java Fri Oct 19 21:10:06 2012
@@ -41,11 +41,11 @@ import org.apache.airavata.workflow.trac
 import org.apache.axis2.addressing.EndpointReference;
 import org.apache.xmlbeans.XmlException;
 import org.apache.xmlbeans.XmlObject;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public abstract class AbstractNotifier {
-    protected static final Logger log = LoggerFactory.getLogger(AbstractNotifier.class);
+    private static final Log log = LogFactory.getLog(AbstractNotifier.class);
     private Map<EndpointReference, NotificationPublisher> publishermap = new ConcurrentHashMap<EndpointReference, NotificationPublisher>();
 
     protected Date activityTimestamp = null;

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/NotifierFactory.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/NotifierFactory.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/NotifierFactory.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/NotifierFactory.java Fri Oct 19 21:10:06 2012
@@ -24,8 +24,8 @@ package org.apache.airavata.workflow.tra
 import org.apache.airavata.workflow.tracking.impl.GenericNotifierImpl;
 import org.apache.airavata.workflow.tracking.impl.NotifierImpl;
 import org.apache.airavata.workflow.tracking.impl.ProvenanceNotifierImpl;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 /**
  * Create a Notifier instance.
@@ -33,7 +33,7 @@ import org.slf4j.LoggerFactory;
  * This code was inspired by the listener agent factory in xmessages
  */
 public class NotifierFactory {
-    private static final Logger logger = LoggerFactory.getLogger(NotifierFactory.class);
+    private static final Log logger = LogFactory.getLog(NotifierFactory.class);
 
     public static Notifier createNotifier() {
         return new NotifierImpl();

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/client/LeadNotificationManager.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/client/LeadNotificationManager.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/client/LeadNotificationManager.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/client/LeadNotificationManager.java Fri Oct 19 21:10:06 2012
@@ -34,12 +34,12 @@ import org.apache.axiom.om.OMAbstractFac
 import org.apache.axiom.om.OMElement;
 import org.apache.axis2.addressing.EndpointReference;
 import org.apache.axis2.addressing.EndpointReferenceHelper;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class LeadNotificationManager {
 
-    private final static Logger logger = LoggerFactory.getLogger(LeadNotificationManager.class);
+    private static final Log logger = LogFactory.getLog(LeadNotificationManager.class);
 
     /**
      * THis API call could be used if the user created a Subscription in an earlier run and now the service is being

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/client/Subscription.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/client/Subscription.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/client/Subscription.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/client/Subscription.java Fri Oct 19 21:10:06 2012
@@ -28,12 +28,12 @@ import org.apache.airavata.wsmg.client.C
 import org.apache.airavata.wsmg.client.MsgBrokerClientException;
 import org.apache.airavata.wsmg.client.WseMsgBrokerClient;
 import org.apache.axis2.addressing.EndpointReference;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class Subscription {
 
-    private static final Logger logger = LoggerFactory.getLogger(Subscription.class);
+    private static final Log logger = LogFactory.getLog(Subscription.class);
 
     private String subscriptionID;
 

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/GenericNotifierImpl.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/GenericNotifierImpl.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/GenericNotifierImpl.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/GenericNotifierImpl.java Fri Oct 19 21:10:06 2012
@@ -34,8 +34,8 @@ import org.apache.airavata.workflow.trac
 import org.apache.airavata.workflow.tracking.types.LogInfoDocument;
 import org.apache.airavata.workflow.tracking.types.LogWarningDocument;
 import org.apache.airavata.workflow.tracking.types.PublishURLDocument;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 /**
  * DOES NOT SUPPORT MULTI_THREADING -- PUBLISHER QUEUE, DATA CONSUMED/PRODUCED BATCHING
@@ -47,7 +47,7 @@ public class GenericNotifierImpl extends
 
     // private AnnotationProps globalAnnotations;
 
-    protected static final Logger logger = LoggerFactory.getLogger(GenericNotifierImpl.class);
+    protected static final Log logger = LogFactory.getLog(GenericNotifierImpl.class);
 
     public GenericNotifierImpl() throws WorkflowTrackingException {
         super();

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/publish/AbstractPublisher.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/publish/AbstractPublisher.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/publish/AbstractPublisher.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/publish/AbstractPublisher.java Fri Oct 19 21:10:06 2012
@@ -28,8 +28,8 @@ import java.util.concurrent.locks.Reentr
 import org.apache.airavata.workflow.tracking.util.LinkedMessageQueue;
 import org.apache.airavata.workflow.tracking.util.Timer;
 import org.apache.xmlbeans.XmlObject;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 /**
  * Abstract method to publish messages in sync or async mode. In async mode, the messages are kept in an in-memory queue
@@ -38,7 +38,7 @@ import org.slf4j.LoggerFactory;
  */
 public abstract class AbstractPublisher implements Runnable, NotificationPublisher {
 
-    protected static final Logger logger = LoggerFactory.getLogger(AbstractPublisher.class);
+    private static final Log logger = LogFactory.getLog(AbstractPublisher.class);
     protected static final boolean IS_LOG_FINEST = logger.isDebugEnabled();
     private final LinkedMessageQueue<BrokerEntry> messageQueue;
     protected static final boolean IS_TIMER = Boolean.getBoolean("ENABLE_TIMER");

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/publish/WSMPublisher.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/publish/WSMPublisher.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/publish/WSMPublisher.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/publish/WSMPublisher.java Fri Oct 19 21:10:06 2012
@@ -35,8 +35,8 @@ import org.apache.airavata.wsmg.client.W
 import org.apache.axiom.om.OMElement;
 import org.apache.axis2.addressing.EndpointReference;
 import org.apache.axis2.addressing.EndpointReferenceHelper;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 /**
  * Publish WS-Eventing messages using WS-Messenger client API
@@ -48,7 +48,7 @@ public class WSMPublisher extends Abstra
     protected final EndpointReference brokerEpr;
     protected Properties configs = new Properties();
 
-    private Logger log = LoggerFactory.getLogger(WSMPublisher.class);
+    private static final Log log = LogFactory.getLog(WSMPublisher.class);
 
     public WSMPublisher(WorkflowTrackingContext context) {
         this(10, context.isEnableAsyncPublishing(), context.getBrokerEpr());
@@ -103,7 +103,7 @@ public class WSMPublisher extends Abstra
         if (isDeleted())
             throw new RuntimeException("Publisher has been deleted!");
         if (IS_LOG_FINEST) {
-            logger.debug("publishing notification to messenger broker: " + leadMessage);
+            log.debug("publishing notification to messenger broker: " + leadMessage);
         }
         try {
             OMElement msg = WorkFlowUtils.reader2OMElement(new StringReader(leadMessage));

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/subscription/LeadNotificationHandler.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/subscription/LeadNotificationHandler.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/subscription/LeadNotificationHandler.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/subscription/LeadNotificationHandler.java Fri Oct 19 21:10:06 2012
@@ -37,8 +37,8 @@ import org.apache.axiom.soap.SOAPHeader;
 import org.apache.xmlbeans.XmlCursor;
 import org.apache.xmlbeans.XmlException;
 import org.apache.xmlbeans.XmlObject;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 /**
  * Utility for clients to subscribe and receive Lead notifications using new message schema. The agent implements the
@@ -49,7 +49,7 @@ import org.slf4j.LoggerFactory;
  */
 public class LeadNotificationHandler implements ConsumerNotificationHandler {
 
-    private static final Logger logger = LoggerFactory.getLogger(LeadNotificationHandler.class);
+    private static final Log logger = LogFactory.getLog(LeadNotificationHandler.class);
 
     private String topic;
 

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/subscription/MessageBoxNotificationHandler.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/subscription/MessageBoxNotificationHandler.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/subscription/MessageBoxNotificationHandler.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/impl/subscription/MessageBoxNotificationHandler.java Fri Oct 19 21:10:06 2012
@@ -41,12 +41,12 @@ import org.apache.axis2.addressing.Endpo
 import org.apache.xmlbeans.XmlCursor;
 import org.apache.xmlbeans.XmlException;
 import org.apache.xmlbeans.XmlObject;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class MessageBoxNotificationHandler implements NotificationHandler {
 
-    private static final Logger logger = LoggerFactory.getLogger(MessageBoxNotificationHandler.class);
+    private static final Log logger = LogFactory.getLog(MessageBoxNotificationHandler.class);
 
     private String messageBoxUrl;
 
@@ -110,7 +110,7 @@ public class MessageBoxNotificationHandl
 
             logger.info("Unsubscribing the messagebox that was destroyed," + " SubscriptionID:" + this.subscriptionId);
 
-            msgboxHandler.deleteMsgBox(msgBoxEpr, 2000L);
+            msgboxHandler.deleteMsgBox(msgBoxEpr, 12000L);
 
         } catch (MsgBrokerClientException e) {
 

Modified: airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/util/Timer.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/util/Timer.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/util/Timer.java (original)
+++ airavata/trunk/modules/commons/workflow-tracking/src/main/java/org/apache/airavata/workflow/tracking/util/Timer.java Fri Oct 19 21:10:06 2012
@@ -21,15 +21,15 @@
 
 package org.apache.airavata.workflow.tracking.util;
 
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 /**
  * calculates simple timing information for instrumenting code
  */
 public class Timer {
 
-    private static final Logger logger = LoggerFactory.getLogger(Timer.class);
+    private static final Log logger = LogFactory.getLog(Timer.class);
 
     private long start, end, total = 0, deltaStart, delta = 0;
     private final String msg;

Modified: airavata/trunk/modules/distribution/pom.xml
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/distribution/pom.xml?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/distribution/pom.xml (original)
+++ airavata/trunk/modules/distribution/pom.xml Fri Oct 19 21:10:06 2012
@@ -138,19 +138,6 @@
             <version>1</version>
         </dependency>
         <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>log4j-over-slf4j</artifactId>
-            <version>${org.slf4j.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-api</artifactId>
-        </dependency>
-        <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-simple</artifactId>
-        </dependency>
-        <dependency>
             <groupId>gpel</groupId>
             <artifactId>gpel_client</artifactId>
             <version>1.0.7-BETA</version>
@@ -263,6 +250,11 @@
             <artifactId>commons-lang</artifactId>
             <version>2.4</version>
         </dependency>
+         <dependency>
+            <groupId>commons-logging</groupId>
+            <artifactId>commons-logging</artifactId>
+            <version>1.1.1</version>
+        </dependency>
         <dependency>
             <groupId>globus</groupId>
             <artifactId>transfer-api-client</artifactId>
@@ -279,6 +271,10 @@
             <version>2.5</version>
         </dependency>
         <dependency>
+                <groupId>log4j</groupId>
+                <artifactId>log4j</artifactId>
+        </dependency>
+        <dependency>
             <groupId>org.apache.airavata</groupId>
             <artifactId>airavata-messenger-client</artifactId>
             <version>${project.version}</version>

Modified: airavata/trunk/modules/distribution/src/main/assembly/bin-assembly.xml
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/distribution/src/main/assembly/bin-assembly.xml?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/distribution/src/main/assembly/bin-assembly.xml (original)
+++ airavata/trunk/modules/distribution/src/main/assembly/bin-assembly.xml Fri Oct 19 21:10:06 2012
@@ -248,13 +248,11 @@
                 <!--<include>org.apache.derby:derbynet:jar</include>-->
                 <include>org.apache.jackrabbit:jackrabbit-core:jar</include>
                 <include>org.apache.jackrabbit:jackrabbit-jcr-rmi:jar</include>
-                <include>org.slf4j:log4j-over-slf4j:jar</include>
-                <include>org.slf4j:slf4j-api:jar</include>
-                <include>org.slf4j:slf4j-simple:jar</include>
                 <include>javax.jcr:jcr:jar</include>
                 <include>commons-collections:commons-collections</include>
                 <include>commons-configuration:commons-configuration</include>
                 <include>commons-lang:commons-lang</include>
+                <include>commons-logging:commons-logging</include>
                 <include>xpp3:xpp3</include>
                 <include>gpel:gpel_client</include>
                 <include>xpp5:xpp5</include>

Modified: airavata/trunk/modules/gfac-axis2/pom.xml
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/gfac-axis2/pom.xml?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/gfac-axis2/pom.xml (original)
+++ airavata/trunk/modules/gfac-axis2/pom.xml Fri Oct 19 21:10:06 2012
@@ -50,8 +50,12 @@
         </dependency>
         <!-- Logging -->
         <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-api</artifactId>
+                <groupId>log4j</groupId>
+                <artifactId>log4j</artifactId>
+        </dependency>
+         <dependency>
+                <groupId>commons-logging</groupId>
+                <artifactId>commons-logging</artifactId>
         </dependency>
          <dependency>
             <groupId>org.apache.airavata</groupId>

Modified: airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/GFacService.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/GFacService.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/GFacService.java (original)
+++ airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/GFacService.java Fri Oct 19 21:10:06 2012
@@ -48,12 +48,12 @@ import org.apache.axis2.description.Axis
 import org.apache.axis2.engine.AxisConfiguration;
 import org.apache.axis2.engine.Phase;
 import org.apache.axis2.engine.ServiceLifeCycle;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class GFacService implements ServiceLifeCycle {
 
-    private static final Logger log = LoggerFactory.getLogger(GFacService.class);
+    private static final Log log = LogFactory.getLog(GFacService.class);
 
     public static final String CONFIGURATION_CONTEXT_REGISTRY = "registry";
     public static final String GFAC_URL = "GFacURL";
@@ -64,7 +64,7 @@ public class GFacService implements Serv
 
     public static final int GFAC_URL_UPDATE_INTERVAL = 1000 * 60 * 60 * 3;
 
-    public static final int JCR_AVAIALABILITY_WAIT_INTERVAL = 1000 * 10;
+    public static final int JCR_AVAIALABILITY_WAIT_INTERVAL = 1000;
 
     public static final String REGISTRY_USER = "registry.user";
 
@@ -195,13 +195,14 @@ public class GFacService implements Serv
                 }
             }catch (Exception e){
                 try {
+                    log.info("Thread is sleeping since registry database is not up");
                     Thread.sleep(JCR_AVAIALABILITY_WAIT_INTERVAL);
                 } catch (InterruptedException e1) {
                     e1.printStackTrace();  //To change body of catch statement use File | Settings | File Templates.
                     return;
                 }
-                log.error(e.getMessage());
-                log.error("Workflow Interpreter Service URL update thread is interrupted");
+//                log.error(e.getMessage());
+//                log.error("Workflow Interpreter Service URL update thread is interrupted");
             }
         }
     }

Modified: airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/dispatchers/GFacURIBasedDispatcher.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/dispatchers/GFacURIBasedDispatcher.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/dispatchers/GFacURIBasedDispatcher.java (original)
+++ airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/dispatchers/GFacURIBasedDispatcher.java Fri Oct 19 21:10:06 2012
@@ -34,13 +34,13 @@ import org.apache.axis2.dispatchers.Abst
 import org.apache.axis2.engine.AxisConfiguration;
 import org.apache.axis2.util.LoggingControl;
 import org.apache.axis2.util.Utils;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class GFacURIBasedDispatcher extends AbstractServiceDispatcher {
 
     public static final String NAME = "GFacURIBasedDispatcher";
-    private static final Logger log = LoggerFactory.getLogger(GFacURIBasedDispatcher.class);
+    private static final Log log = LogFactory.getLog(GFacURIBasedDispatcher.class);
 
     /*
      * (non-Javadoc)

Modified: airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/reciever/GFacMessageReciever.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/reciever/GFacMessageReciever.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/reciever/GFacMessageReciever.java (original)
+++ airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/reciever/GFacMessageReciever.java Fri Oct 19 21:10:06 2012
@@ -68,12 +68,12 @@ import org.apache.axis2.engine.MessageRe
 import org.apache.axis2.util.MessageContextBuilder;
 import org.apache.axis2.util.Utils;
 import org.apache.xmlbeans.XmlException;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class GFacMessageReciever implements MessageReceiver {
 
-    private static Logger log = LoggerFactory.getLogger(GFacMessageReciever.class);
+    private static  Log log = LogFactory.getLog(GFacMessageReciever.class);
     public static final String TRUSTED_CERT_LOCATION = "trusted.cert.location";
     public static final String MYPROXY_SERVER = "myproxy.server";
     public static final String MYPROXY_USER = "myproxy.user";
@@ -103,7 +103,7 @@ public class GFacMessageReciever impleme
         case INVOKE:
             try {
                 ContextHeaderDocument document  = ContextHeaderDocument.Factory.parse(getHeader(axisRequestMsgCtx).toStringWithConsume());
-                log = LoggerFactory.getLogger(GFacMessageReciever.class + "." + document.getContextHeader().getWorkflowMonitoringContext().getExperimentId());
+                log = LogFactory.getLog(GFacMessageReciever.class + "." + document.getContextHeader().getWorkflowMonitoringContext().getExperimentId());
                 log.debug("invoking Invoke operation");
                 processInvokeOperation(axisRequestMsgCtx);
                 log.info(axisRequestMsgCtx.getEnvelope().getBody().getFirstElement().toString());

Modified: airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/util/WSDLUtil.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/util/WSDLUtil.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/util/WSDLUtil.java (original)
+++ airavata/trunk/modules/gfac-axis2/src/main/java/org/apache/airavata/services/gfac/axis2/util/WSDLUtil.java Fri Oct 19 21:10:06 2012
@@ -48,8 +48,8 @@ import javax.xml.namespace.QName;
 
 import org.apache.airavata.commons.gfac.wsdl.GFacWSDLException;
 import org.apache.airavata.commons.gfac.wsdl.WSDLConstants;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 import org.w3c.dom.DOMImplementation;
 import org.w3c.dom.Document;
 import org.xml.sax.InputSource;
@@ -61,7 +61,7 @@ import com.ibm.wsdl.extensions.soap.SOAP
 
 public class WSDLUtil {
 
-    private static final Logger logger = LoggerFactory.getLogger(WSDLUtil.class);
+    private static final Log logger = LogFactory.getLog(WSDLUtil.class);
 
     private WSDLUtil() {
     }

Modified: airavata/trunk/modules/gfac-core/pom.xml
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/gfac-core/pom.xml?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/gfac-core/pom.xml (original)
+++ airavata/trunk/modules/gfac-core/pom.xml Fri Oct 19 21:10:06 2012
@@ -70,8 +70,12 @@
 
         <!-- Logging -->
         <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-api</artifactId>
+                <groupId>log4j</groupId>
+                <artifactId>log4j</artifactId>
+        </dependency>
+         <dependency>
+                <groupId>commons-logging</groupId>
+                <artifactId>commons-logging</artifactId>
         </dependency>
 
         <!-- GFAC schemas -->
@@ -119,11 +123,6 @@
             <scope>test</scope>
         </dependency>
         <dependency>
-            <groupId>org.slf4j</groupId>
-            <artifactId>slf4j-simple</artifactId>
-            <scope>test</scope>
-        </dependency>
-        <dependency>
             <groupId>org.apache.airavata</groupId>
             <artifactId>airavata-common-registry-api</artifactId>
             <version>${project.version}</version>

Modified: airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/GfacAPI.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/GfacAPI.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/GfacAPI.java (original)
+++ airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/GfacAPI.java Fri Oct 19 21:10:06 2012
@@ -36,13 +36,13 @@ import org.apache.airavata.core.gfac.not
 import org.apache.airavata.core.gfac.notification.impl.WorkflowTrackingNotification;
 import org.apache.airavata.core.gfac.services.GenericService;
 import org.apache.airavata.schemas.gfac.*;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 import java.net.URI;
 
 public class GfacAPI {
-    private static final Logger log = LoggerFactory.getLogger(GfacAPI.class +
+    private static final Log log = LogFactory.getLog(GfacAPI.class +
             "." + WorkflowContextHeaderBuilder.getCurrentContextHeader().getWorkflowMonitoringContext().getExperimentId());
     public static final String REPOSITORY_PROPERTIES = "airavata-server.properties";
 

Modified: airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/context/security/impl/GSISecurityContext.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/context/security/impl/GSISecurityContext.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/context/security/impl/GSISecurityContext.java (original)
+++ airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/context/security/impl/GSISecurityContext.java Fri Oct 19 21:10:06 2012
@@ -26,12 +26,12 @@ import org.apache.airavata.core.gfac.con
 import org.apache.airavata.core.gfac.exception.SecurityException;
 import org.globus.tools.MyProxy;
 import org.ietf.jgss.GSSCredential;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class GSISecurityContext implements SecurityContext {
 
-    protected final Logger log = LoggerFactory.getLogger(this.getClass());
+    private static final Log log = LogFactory.getLog(GSISecurityContext.class);
 
     private MyProxyManager proxyRenewer;
 

Modified: airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/context/security/impl/utils/MyProxyManager.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/context/security/impl/utils/MyProxyManager.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/context/security/impl/utils/MyProxyManager.java (original)
+++ airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/context/security/impl/utils/MyProxyManager.java Fri Oct 19 21:10:06 2012
@@ -32,12 +32,12 @@ import org.globus.gsi.gssapi.GlobusGSSCr
 import org.globus.myproxy.MyProxy;
 import org.globus.myproxy.MyProxyException;
 import org.ietf.jgss.GSSCredential;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 public class MyProxyManager {
 
-    private final Logger log = LoggerFactory.getLogger(this.getClass());
+    private static final Log log = LogFactory.getLog(MyProxyManager.class);
 
     private final String username;
     private final String password;

Modified: airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/post/GridFtpOutputStaging.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/post/GridFtpOutputStaging.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/post/GridFtpOutputStaging.java (original)
+++ airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/post/GridFtpOutputStaging.java Fri Oct 19 21:10:06 2012
@@ -43,15 +43,15 @@ import org.apache.airavata.schemas.gfac.
 import org.apache.airavata.schemas.gfac.GlobusHostType;
 import org.apache.airavata.schemas.gfac.HostDescriptionType;
 import org.ietf.jgss.GSSCredential;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 /**
  * Output plugin to transfer file from GridFTP host to location given in output parameter
  */
 public class GridFtpOutputStaging extends PostExecuteChain {
 
-    public static final Logger log = LoggerFactory.getLogger(GridFtpOutputStaging.class);
+    private static final Log log = LogFactory.getLog(GridFtpOutputStaging.class);
 
     public static final String MYPROXY_SECURITY_CONTEXT = "myproxy";
 

Modified: airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/post/OutputRegister.java
URL: http://svn.apache.org/viewvc/airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/post/OutputRegister.java?rev=1400294&r1=1400293&r2=1400294&view=diff
==============================================================================
--- airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/post/OutputRegister.java (original)
+++ airavata/trunk/modules/gfac-core/src/main/java/org/apache/airavata/core/gfac/extension/post/OutputRegister.java Fri Oct 19 21:10:06 2012
@@ -34,15 +34,15 @@ import org.apache.airavata.core.gfac.exc
 import org.apache.airavata.core.gfac.extension.PostExecuteChain;
 import org.apache.airavata.registry.api.AiravataRegistry2;
 import org.apache.airavata.registry.api.DataRegistry;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
 
 /**
  * Register output to Registry
  */
 public class OutputRegister extends PostExecuteChain {
 
-    private static final Logger log = LoggerFactory.getLogger(OutputRegister.class);
+    private static final Log log = LogFactory.getLog(OutputRegister.class);
 
     public boolean execute(InvocationContext context) throws ExtensionException {
         // output context