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Posted to commits@airavata.apache.org by sh...@apache.org on 2014/11/07 01:11:25 UTC
[10/23] airavata git commit: re-arrange server and clint code to
create seperate distributions. AIRAVATA-1471
http://git-wip-us.apache.org/repos/asf/airavata/blob/a133fa8c/modules/distribution/gfac-server/src/main/resources/NOTICE
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diff --git a/modules/distribution/gfac-server/src/main/resources/NOTICE b/modules/distribution/gfac-server/src/main/resources/NOTICE
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+Apache Airavata
+Copyright 2014 The Apache Software Foundation
+
+This product includes software developed at
+The Apache Software Foundation (http://www.apache.org/).
+
+===============================================================================
+Apache Xerces Java Notice:
+
+ Portions of this software were originally based on the following:
+ - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
+ - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
+ - voluntary contributions made by Paul Eng on behalf of the
+ Apache Software Foundation that were originally developed at iClick, Inc.,
+ software copyright (c) 1999.
+
+================================================================================
+Apache XmlBeans Notice:
+
+ Portions of this software were originally based on the following:
+ - software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
+
+ Aside from contributions to the Apache XMLBeans project, this
+ software also includes:
+
+ - one or more source files from the Apache Xerces-J and Apache Axis
+ products, Copyright (c) 1999-2003 Apache Software Foundation
+
+ - W3C XML Schema documents Copyright 2001-2003 (c) World Wide Web
+ Consortium (Massachusetts Institute of Technology, European Research
+ Consortium for Informatics and Mathematics, Keio University)
+
+ - resolver.jar from Apache Xml Commons project,
+ Copyright (c) 2001-2003 Apache Software Foundation
+
+ - Piccolo XML Parser for Java from http://piccolo.sourceforge.net/,
+ Copyright 2002 Yuval Oren under the terms of the Apache Software License 2.0
+
+ - JSR-173 Streaming API for XML from http://sourceforge.net/projects/xmlpullparser/,
+ Copyright 2005 BEA under the terms of the Apache Software License 2.0
+
+=========================================================================================
+Apache Axis2 Notice: (axis2-*, mex-1.5.1-impl)
+
+Portions Copyright 2006 International Business Machines Corp.
+Portions Copyright 2005-2007 WSO2, Inc.
+
+This product also includes schemas and specification developed by:
+- the W3C consortium (http://www.w3c.org)
+
+This product also includes WS-* schemas developed by International
+Business Machines Corporation, Microsoft Corporation, BEA Systems,
+TIBCO Software, SAP AG, Sonic Software, and VeriSign
+
+This product also includes a WSDL developed by salesforce.com
+- Copyright 1999-2006 salesforce.com, inc.
+Portions of the included xmlbeans library were originally based on the following:
+- software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
+
+====================================================================================
+Apache Derby Notice:
+
+Portions of Derby were originally developed by
+International Business Machines Corporation and are
+licensed to the Apache Software Foundation under the
+"Software Grant and Corporate Contribution License Agreement",
+informally known as the "Derby CLA".
+The following copyright notice(s) were affixed to portions of the code
+with which this file is now or was at one time distributed
+and are placed here unaltered.
+
+(C) Copyright 1997,2004 International Business Machines Corporation. All rights reserved.
+
+(C) Copyright IBM Corp. 2003.
+
+=======================
+
+The portion of the functionTests under 'nist' was originally
+developed by the National Institute of Standards and Technology (NIST),
+an agency of the United States Department of Commerce, and adapted by
+International Business Machines Corporation in accordance with the NIST
+Software Acknowledgment and Redistribution document at
+http://www.itl.nist.gov/div897/ctg/sql_form.htm
+
+========================
+
+The JDBC apis for small devices and JDBC3 (under java/stubs/jsr169 and
+java/stubs/jdbc3) were produced by trimming sources supplied by the
+Apache Harmony project. In addition, the Harmony SerialBlob and
+SerialClob implementations are used. The following notice covers the Harmony sources:
+
+Portions of Harmony were originally developed by
+Intel Corporation and are licensed to the Apache Software
+Foundation under the "Software Grant and Corporate Contribution
+License Agreement", informally known as the "Intel Harmony CLA".
+
+=============================================================================
+Apache Woden Notice:
+
+ This product also includes software developed by :
+
+ - IBM Corporation (http://www.ibm.com),
+ WSDL4J was the initial code contribution for the Apache Woden
+ project and some of the WSDL4J design and code has been reused.
+ - The W3C Consortium (http://www.w3c.org),
+ Common W3C XML Schema and DTD files are packaged with Apache Woden.
+
+ Please read the different LICENSE files present in the root directory of
+ this distribution.
+
+=========================================================================
+Woodstox Notice:
+
+This product includes software developed by the Woodstox Project
+(http://woodstox.codehaus.org/)
+
+This product currently only contains code developed by authors
+of specific components, as identified by the source code files.
+
+Since product implements StAX API, it has dependencies to StAX API
+classes.
+
+For additional credits (generally to people who reported problems)
+see CREDITS file.
+
+===========================================================================
+Apache xml-commons xml-apis Notice:
+
+ Portions of this software were originally based on the following:
+ - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
+ - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
+ - software copyright (c) 2000 World Wide Web Consortium, http://www.w3.org
+
+================================================================================================
+Apache Xalan Notice:
+
+Portions of this software was originally based on the following:
+ - software copyright (c) 1999-2002, Lotus Development Corporation., http://www.lotus.com.
+ - software copyright (c) 2001-2002, Sun Microsystems., http://www.sun.com.
+ - software copyright (c) 2003, IBM Corporation., http://www.ibm.com.
+ - voluntary contributions made by Ovidiu Predescu (ovidiu@cup.hp.com) on behalf of the
+ Apache Software Foundation and was originally developed at Hewlett Packard Company.
+================================================================================================
+Apache OpenJPA Notice:
+
+OpenJPA includes software developed by the SERP project
+Copyright (c) 2002-2006, A. Abram White. All rights reserved.
+
+OpenJPA includes the persistence and orm schemas from the JPA specifications.
+Copyright 2005-2009 Sun Microsystems, Inc. All rights reserved.
+OpenJPA elects to include this software in this distribution under the
+CDDL license. You can obtain a copy of the License at:
+ https://glassfish.dev.java.net/public/CDDL+GPL.html
+The source code is available at:
+ https://glassfish.dev.java.net/source/browse/glassfish/
+
+OpenJPA includes software written by Miroslav Nachev
+OpenJPA uses test code written by Charles Tillman.
+================================================================================================
+Apache XmlSchema Notice:
+
+Portions Copyright 2006 International Business Machines Corp.
+================================================================================================
http://git-wip-us.apache.org/repos/asf/airavata/blob/a133fa8c/modules/distribution/gfac-server/src/main/resources/README
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diff --git a/modules/distribution/gfac-server/src/main/resources/README b/modules/distribution/gfac-server/src/main/resources/README
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+Apache Airavata Server - README.txt
+Licensed under Apache License 2.0 - http://www.apache.org/licenses/LICENSE-2.0
+--------------------------------------------------------------------------------
+
+About
+=====
+Apache Airavata, a software framework to executing and managing computational jobs on
+distributed computing resources including local clusters, supercomputers, national grids,
+academic and commercial clouds. Airavata can be used as individual components or
+as an integrated solution to build science gateways or general-purpose distributed
+application and workflow management systems. Users can use Airavata back end services
+and build gadgets to deploy in open social containers such as Apache Rave and modify them
+to suit their needs. Airavata builds on general concepts of service oriented computing,
+distributed messaging, and workflow composition and orchestration.
+
+This distribution allows you to run a standalone Airavata Server which includes all the
+airavata services shipped with a default derby database as the backend registry.
+
+Release Notes
+=============
+0.11 is the tenth release of Airavata (skipped 0.1-INCUBATNG). This release focuses bug fixes and GSISSH library for beta testing. For detailed tasks list, please see RELEASE_NOTES.
+
+Building from source
+====================
+For brief installation instructions, see INSTALL
+For detailed installation and further instructions refer http://airavata.apache.org/ - Documentation section in left hand panel. Step by step with proper documentation are provided.
+
+Known Issues in This Release
+============================
+This is the base release and is focused on a good foundation and less on features. This
+version is not recommended for production usage.
+
+Airavata Binary Distribution Directory Structure
+================================================
+
+ AIRAVATA_HOME
+ ├── bin
+ │ ├── database_scripts <dir>
+ │ ├── airavata-server.bat
+ │ ├── airavata-server.properties
+ │ ├── airavata-server.sh
+ │ ├── authenticators.xml
+ │ ├── axis2.xml
+ │ ├── derby.sh
+ │ ├── host.xml
+ │ ├── log4j.properties
+ │ ├── logo.txt
+ │ ├── setenv.bat
+ │ ├── setenv.sh
+ │ └── startNetworkServer
+ ├── lib <dir>
+ ├── repository
+ │ ├── modules
+ │ └── services
+ ├── samples
+ │ ├── workflows <dir>
+ │ ├── echo_out.sh
+ │ └── echo.sh
+ ├── INSTALL
+ ├── LICENSE
+ ├── NOTICE
+ └── README
+
+
+How to test and run samples
+===========================
+* If you built Airavata from source, and if you see "BUILD SUCCESS", then the test cases should have passes.
+* The test cases are beyond unit level, they startup embedded services and run through basic workflow use cases.
+* To walk through Airavata features, follow "Airavata in Five Minutes" tutorial at http://airavata.apache.org/documentation/tutorials/airavata-in-5-minutes.html
+* For intermediate level Airavata features, follow "Airavata in Ten Minutes" tutorial at http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html
+* For advanced use cases, please contact mailing lists - http://airavata.apache.org/community/mailing-lists.html
+
+Description of Directory Structure
+==================================
+ - bin
+ This contains all the configuration files & the executable scripts to run the Airavata Server (Axis2 server
+ with Airavata services which include messageBroker and messageBox with GFac Axis2 services), & a standalone Apache Derby server.
+
+ - bin - database_scripts
+ Contains the database scripts which are used to create tables for messagebox and messagebroker services
+
+ - samples
+ This contains sample workflow to try out & sample application scripts.
+
+ - lib
+ This contains all the libraries required to run the airavata server and/or derby server.
+
+ - repository - services
+ Contains deployed services in Axis2 runtime.
+
+ - README
+ This document.
+
+ - INSTALL
+ This document will contain information on installing Apache-Airavata.
+
+
+Other Available Distributions
+=============================
+
+Server Distributions
+--------------------
+* Airavata Server
+ The Airavata Server binary distribution allows you to run a standalone Airavata Server which includes all the airavata services
+ shipped with a default derby database as the backend registry. For stable purposes, a mysql configuration is recommended.
+
+* Airavata Server Web Application
+ This is similar package as the Airavata Server but is distributed as the server Web Application archive.
+ This war is compatible with Apache Tomcat application server. The war bundles all airavata services
+ enabled by defualt to startup a derby database as the backend registry. For stable purposes, a mysql configuration is recommended.
+
+Client Distributions
+--------------------
+* Airavata XBaya
+ The Airavata XBaya distribution is a client GUI application with features to register applications as web services, construct workflows,
+ execute and monitor workflows and browse the generated results from the airavata registry.
+
+* Airavata XBaya JNLP
+ The Airavata XBaya JNLP distribution is the simular GUI distribution but prepackeged to be ready to be deployed to
+ a web server as a web start application. The GUI provides features to register applications as web services, construct workflows,
+ execute and monitor workflows and browse the generated results from the airavata registry.
http://git-wip-us.apache.org/repos/asf/airavata/blob/a133fa8c/modules/distribution/gfac-server/src/main/resources/bin/gfac-server.sh
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diff --git a/modules/distribution/gfac-server/src/main/resources/bin/gfac-server.sh b/modules/distribution/gfac-server/src/main/resources/bin/gfac-server.sh
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+#!/bin/bash
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+. `dirname $0`/setenv.sh
+cd $AIRAVATA_HOME/bin
+LOGO_FILE="logo.txt"
+
+JAVA_OPTS=""
+AIRAVATA_COMMAND=""
+IS_DAEMON_MODE=false
+LOGO=true
+STOP=false
+FORCE=false
+SERVERS="--servers=gfac"
+for var in "$@"
+do
+ case $var in
+ -xdebug)
+ JAVA_OPTS="$JAVA_OPTS -Xdebug -Xnoagent -Xrunjdwp:transport=dt_socket,server=y,address=8000"
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
+ shift
+ ;;
+ -security)
+ JAVA_OPTS="$JAVA_OPTS -Djava.security.manager -Djava.security.policy=$AIRAVATA_HOME/conf/axis2.policy -Daxis2.home=$AIRAVATA_HOME"
+ shift
+ ;;
+ start)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
+ IS_DAEMON_MODE=true
+ shift
+ ;;
+ stop)
+ LOGO=false
+ STOP=true
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $var"
+ shift
+ ;;
+ --force)
+ FORCE=true
+ shift
+ ;;
+ -nologo)
+ LOGO=false
+ shift
+ ;;
+ -h)
+ echo "Usage: airavata-server.sh [command-options]"
+ echo "command options:"
+ echo " start Start server in daemon mode"
+ echo " stop [--force] Stop all airavata servers."
+ echo " --<key>[=<value>] Server setting(s) to override or introduce (overrides values in airavata-server.properties)"
+ echo " -nologo Do not show airavata logo"
+ echo " -xdebug Start Airavata Server under JPDA debugger"
+ echo " -security Enable Java 2 security"
+ echo " -h Display this help and exit"
+ shift
+ exit 0
+ ;;
+ *)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS $var"
+ shift
+ esac
+done
+if $LOGO ; then
+ if [ -e $LOGO_FILE ]
+ then
+ cat $LOGO_FILE
+ fi
+fi
+if $STOP && $FORCE ;
+then
+ for f in `find . -name "server-start_*"`; do
+ f_split=(${f//_/ });
+ echo "Found process file : $f"
+ echo -n " Sending kill signals to process ${f_split[1]}..."
+ out=`kill -9 ${f_split[1]} 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ echo -n " Removing process file..."
+ out=`rm $f 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ done
+else
+ if $IS_DAEMON_MODE ; then
+ echo "Starting airavata server in daemon mode..."
+ nohup java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $* > gfac-server.out &
+ else
+ java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $*
+ fi
+fi
+
http://git-wip-us.apache.org/repos/asf/airavata/blob/a133fa8c/modules/distribution/gfac-server/src/main/resources/bin/logo.txt
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diff --git a/modules/distribution/gfac-server/src/main/resources/bin/logo.txt b/modules/distribution/gfac-server/src/main/resources/bin/logo.txt
new file mode 100644
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+...._....................._..............._...._......................_.........
+.../ \..._.__...__._..___| |__...___...../ \..(_)_.__.__.___...____._|.|_.__._..
+../ _ \.| '_ \./ _` |/ __| '_ \./ _ \.../ _ \.| | '__/ _` \ \./ / _` | __/ _` |.
+./ ___ \| |_) | (_| | (__| |.| | __/../ ___ \| | |.| (_| |\ V / (_| | || (_| |.
+/_/...\_\ .__/.\__,_|\___|_|.|_|\___|./_/...\_\_|_|..\__,_|.\_/.\__,_|\__\__,_|.
+........|_|.....................................................................
+................................................................................
+................,+????++~..~~++..+????????+??++.++~...~+=???+++.................
+..............:???????....:::...~??????????????.~..::...=????????...............
+............????????..~~..?????..??????????????.?????..~~~.~???????.............
+...........?????????I,~I~~??????.+????????????.~??????~=~..?????????~...........
+.........?????++??????..????????:.??????????I..????????..????????+????..........
+........??.....???????....???????...???????+..+??????+.I.????????.....?,........
+........????==????????..??..?????..=???????=..?????,.=+?.?????????===??=........
+......=??????????+????..+??=.???=.~??????????,.???=,???,.????=+??????????.......
+....??????????+...+I++..???,=...:??????????????.....+??..++I?+..,??????????.....
+....???????=??..........??..+??.:=:.???????......??..??=..........?=???????=....
+....??????..?...........+?..???.....???????......???.??...........~=.??????=....
+....~???~.~..............?..???.~=..,??????...7..???.?.:..............~????:....
+...7....7 ...............?..????. ...??????... .????.?.?.............I ..:.:....
+.....+7=,.+?................????:,I...?????..=.?????.?.............??~.=7+......
+..........????..............??????~...~??..~~??????..?...........+???,..........
+...........???............=.+???????,.?+:.?????????..+...........???+...........
+............??............?,.??????.,??..??????????.,............???............
+...........??,.............=.,????.?+....????????I.I..............=?............
+..........I?..................+??.:?~.....=??????..................??...........
+..........??...?...............??.:?=......??????..............?...??...........
+............++?..............?.????...?....??????.+..............++I............
+.............................?.??????~....???????.?.............................
+............................~~.??????......??????...............................
+.............................=???????......???????+.............................
+..........................=I??++?+++?......?+++++++?+...........................
+..........................,..77..77......... .. ...7..........................
+................................................................................
http://git-wip-us.apache.org/repos/asf/airavata/blob/a133fa8c/modules/distribution/orchestrator-server/pom.xml
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diff --git a/modules/distribution/orchestrator-server/pom.xml b/modules/distribution/orchestrator-server/pom.xml
new file mode 100644
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+++ b/modules/distribution/orchestrator-server/pom.xml
@@ -0,0 +1,325 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor
+ license agreements. See the NOTICE file distributed with this work for additional
+ information regarding copyright ownership. The ASF licenses this file to
+ you under the Apache License, Version 2.0 (theÏ "License"); you may not use
+ this file except in compliance with the License. You may obtain a copy of
+ the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required
+ by applicable law or agreed to in writing, software distributed under the
+ License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS
+ OF ANY ~ KIND, either express or implied. See the License for the specific
+ language governing permissions and limitations under the License. -->
+
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
+ <parent>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>distribution</artifactId>
+ <version>0.14-SNAPSHOT</version>
+ <relativePath>../pom.xml</relativePath>
+ </parent>
+
+ <modelVersion>4.0.0</modelVersion>
+ <artifactId>apache-orchestrator-server</artifactId>
+ <name>Orchestrator server distribution</name>
+ <packaging>pom</packaging>
+ <url>http://airavata.apache.org/</url>
+
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-dependency-plugin</artifactId>
+ <version>2.8</version>
+ <executions>
+ <execution>
+ <id>unpack</id>
+ <phase>compile</phase>
+ <goals>
+ <goal>unpack</goal>
+ </goals>
+ <configuration>
+ <artifactItems>
+ <artifactItem>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-server-configuration</artifactId>
+ <version>${project.version}</version>
+ <type>jar</type>
+ </artifactItem>
+ </artifactItems>
+ <!--includes>**/*.war</includes -->
+ <outputDirectory>${project.build.directory}/conf</outputDirectory>
+ </configuration>
+ </execution>
+ </executions>
+ </plugin>
+
+ <plugin>
+ <groupId>org.codehaus.gmaven</groupId>
+ <artifactId>gmaven-plugin</artifactId>
+ <version>1.4</version>
+ <executions>
+ <execution>
+ <id>generate-timestamp</id>
+ <phase>package</phase>
+ <goals>
+ <goal>execute</goal>
+ </goals>
+ <configuration>
+ <source>
+ import java.util.Date
+ import java.text.MessageFormat
+ project.properties['buildTimestamp'] =
+ MessageFormat.format("{0,date,dd-MM-yyyy}", new
+ Date())
+ </source>
+ </configuration>
+ </execution>
+ </executions>
+ </plugin>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-assembly-plugin</artifactId>
+ <executions>
+ <execution>
+ <id>distribution-package</id>
+ <phase>package</phase>
+ <goals>
+ <goal>single</goal>
+ </goals>
+ <configuration>
+ <finalName>${archieve.name}-${project.version}</finalName>
+ <descriptors>
+ <descriptor>src/main/assembly/bin-assembly.xml</descriptor>
+ <!-- <descriptor>src/main/assembly/src-assembly.xml</descriptor> -->
+ </descriptors>
+ <attach>false</attach>
+ </configuration>
+ </execution>
+ </executions>
+ </plugin>
+
+ <plugin>
+ <groupId>org.codehaus.mojo</groupId>
+ <artifactId>build-helper-maven-plugin</artifactId>
+ <version>1.7</version>
+ <executions>
+ <execution>
+ <id>attach-artifacts</id>
+ <phase>package</phase>
+ <goals>
+ <goal>attach-artifact</goal>
+ </goals>
+ <configuration>
+ <artifacts>
+ <artifact>
+ <file>${airavata.bin.zip}</file>
+ <type>zip</type>
+ <classifier>bin</classifier>
+ </artifact>
+ <artifact>
+ <file>${airavata.bin.tar.gz}</file>
+ <type>tar.gz</type>
+ <classifier>bin</classifier>
+ </artifact>
+ </artifacts>
+ </configuration>
+ </execution>
+ </executions>
+ </plugin>
+ </plugins>
+ </build>
+
+ <dependencies>
+ <dependency>
+ <groupId>org.apache.derby</groupId>
+ <artifactId>derby</artifactId>
+ <version>${derby.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.derby</groupId>
+ <artifactId>derbyclient</artifactId>
+ <version>${derby.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.derby</groupId>
+ <artifactId>derbynet</artifactId>
+ <version>${derby.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.derby</groupId>
+ <artifactId>derbytools</artifactId>
+ <version>${derby.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.slf4j</groupId>
+ <artifactId>slf4j-api</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.slf4j</groupId>
+ <artifactId>jcl-over-slf4j</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>org.slf4j</groupId>
+ <artifactId>slf4j-log4j12</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>log4j</groupId>
+ <artifactId>log4j</artifactId>
+ </dependency>
+ <dependency>
+ <groupId>javax.jcr</groupId>
+ <artifactId>jcr</artifactId>
+ <version>${jcr.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-collections</groupId>
+ <artifactId>commons-collections</artifactId>
+ <version>3.2.1</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-lang</groupId>
+ <artifactId>commons-lang</artifactId>
+ <version>2.4</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-io</groupId>
+ <artifactId>commons-io</artifactId>
+ <version>2.4</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-codec</groupId>
+ <artifactId>commons-codec</artifactId>
+ <version>1.6</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-standalone-server</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>app-catalog-cpi</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-messaging-core</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>app-catalog-data</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-common-utils</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-orchestrator-service</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-orchestrator-core</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-registry-cpi</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-jpa-registry</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-data-models</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-credential-store</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-message-monitor</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-workflow-model-core</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-messenger-commons</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-messenger-client</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-model-utils</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.airavata</groupId>
+ <artifactId>airavata-workflow-engine</artifactId>
+ <version>${project.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.openjpa</groupId>
+ <artifactId>openjpa-all</artifactId>
+ <version>2.2.0</version>
+ </dependency>
+ <dependency>
+ <groupId>com.google.guava</groupId>
+ <artifactId>guava</artifactId>
+ <version>12.0</version>
+ </dependency>
+ <!-- zookeeper dependencies -->
+
+ <dependency>
+ <groupId>org.apache.zookeeper</groupId>
+ <artifactId>zookeeper</artifactId>
+ <version>3.4.0</version>
+ </dependency>
+ <dependency>
+ <groupId>commons-cli</groupId>
+ <artifactId>commons-cli</artifactId>
+ <version>1.2</version>
+ </dependency>
+
+ <dependency>
+ <groupId>com.rabbitmq</groupId>
+ <artifactId>amqp-client</artifactId>
+ <version>3.2.3</version>
+ </dependency>
+ </dependencies>
+
+
+ <properties>
+ <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+ <archieve.name>apache-orchestrator-server</archieve.name>
+ <used.axis2.release>${axis2.version}</used.axis2.release>
+ <airavata.dist.name>${archieve.name}-${project.version}</airavata.dist.name>
+ <airavata.work.dir>${project.build.directory}/tests/${airavata.dist.name}</airavata.work.dir>
+ <airavata.bin.zip>${project.build.directory}/${airavata.dist.name}-bin.zip</airavata.bin.zip>
+ <airavata.bin.tar.gz>${project.build.directory}/${airavata.dist.name}-bin.tar.gz</airavata.bin.tar.gz>
+ <airavata.webapp.dir>${project.build.directory}/airavata-axis2</airavata.webapp.dir>
+ <!--airavata.war.dir>${project.build.directory}/test</airavata.war.dir>
+ <airavata.webapp.war.zip>${project.build.directory}/${airavata.dist.name}.war.zip</airavata.webapp.war.zip>
+ <airavata.webapp.war.tar.gz>${project.build.directory}/${airavata.dist.name}.war.tar.gz</airavata.webapp.war.tar.gz -->
+ </properties>
+</project>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a133fa8c/modules/distribution/orchestrator-server/src/main/assembly/bin-assembly.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/orchestrator-server/src/main/assembly/bin-assembly.xml b/modules/distribution/orchestrator-server/src/main/assembly/bin-assembly.xml
new file mode 100644
index 0000000..74bf2c3
--- /dev/null
+++ b/modules/distribution/orchestrator-server/src/main/assembly/bin-assembly.xml
@@ -0,0 +1,230 @@
+<!--Licensed to the Apache Software Foundation (ASF) under one or more contributor
+ license agreements. See the NOTICE file distributed with this work for additional
+ information regarding copyright ownership. The ASF licenses this file to
+ you under the Apache License, Version 2.0 (theÏ "License"); you may not use
+ this file except in compliance with the License. You may obtain a copy of
+ the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required
+ by applicable law or agreed to in writing, software distributed under the
+ License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS
+ OF ANY ~ KIND, either express or implied. See the License for the specific
+ language governing permissions and limitations under the License. -->
+
+<!DOCTYPE assembly [
+ <!ELEMENT assembly (id|includeBaseDirectory|baseDirectory|formats|fileSets|dependencySets)*>
+ <!ELEMENT id (#PCDATA)>
+ <!ELEMENT includeBaseDirectory (#PCDATA)>
+ <!ELEMENT baseDirectory (#PCDATA)>
+ <!ELEMENT formats (format)*>
+ <!ELEMENT format (#PCDATA)>
+ <!ELEMENT fileSets (fileSet)*>
+ <!ELEMENT fileSet (directory|outputDirectory|includes)*>
+ <!ELEMENT directory (#PCDATA)>
+ <!ELEMENT outputDirectory (#PCDATA)>
+ <!ELEMENT includes (include)*>
+ <!ELEMENT include (#PCDATA)>
+ <!ELEMENT dependencySets (dependencySet)*>
+ <!ELEMENT dependencySet (outputDirectory|includes)*>
+ ]>
+<assembly>
+ <id>bin</id>
+ <includeBaseDirectory>true</includeBaseDirectory>
+ <baseDirectory>${archieve.name}-${version}</baseDirectory>
+ <formats>
+ <format>tar.gz</format>
+ <format>zip</format>
+ </formats>
+
+ <fileSets>
+
+ <!-- ********************** copy release notes files ********************** -->
+ <fileSet>
+ <directory>../../../</directory>
+ <outputDirectory>.</outputDirectory>
+ <includes>
+ <include>RELEASE_NOTES</include>
+ </includes>
+ </fileSet>
+ <!-- ********************** copy licenses, readme etc. ********************** -->
+ <fileSet>
+ <directory>src/main/resources/</directory>
+ <outputDirectory>.</outputDirectory>
+ <includes>
+ <include>LICENSE</include>
+ <include>NOTICE</include>
+ <include>README</include>
+ <include>INSTALL</include>
+ </includes>
+ </fileSet>
+
+ <!-- ********************** copy database scripts ********************** -->
+ <fileSet>
+ <directory>../../ws-messenger/messagebroker/src/main/resources/database_scripts
+ </directory>
+ <outputDirectory>bin/database_scripts
+ </outputDirectory>
+ <includes>
+ <include>*sql*</include>
+ </includes>
+ </fileSet>
+ <fileSet>
+ <directory>../../ws-messenger/messagebox/src/main/resources/database_scripts
+ </directory>
+ <outputDirectory>bin/database_scripts
+ </outputDirectory>
+ <includes>
+ <include>*sql*</include>
+ </includes>
+ </fileSet>
+ <fileSet>
+ <directory>../../registry/airavata-jpa-registry/src/main/resources
+ </directory>
+ <outputDirectory>bin/database_scripts
+ </outputDirectory>
+ <includes>
+ <include>*sql*</include>
+ </includes>
+ </fileSet>
+ <fileSet>
+ <directory>../../app-catalog/app-catalog-data/src/main/resources
+ </directory>
+ <outputDirectory>bin/database_scripts
+ </outputDirectory>
+ <includes>
+ <include>*sql*</include>
+ </includes>
+ </fileSet>
+ <fileSet>
+ <directory>src/main/resources/bin</directory>
+ <outputDirectory>bin</outputDirectory>
+ <fileMode>777</fileMode>
+ <includes>
+ <include>*.sh</include>
+ <include>*.bat</include>
+ <include>logo.txt</include>
+ <include>startNetworkServer</include>
+ </includes>
+ </fileSet>
+ <fileSet>
+ <directory>${project.build.directory}/conf</directory>
+ <outputDirectory>bin</outputDirectory>
+ <includes>
+ <include>airavata-server.properties</include>
+ <include>zoo.cfg</include>
+ <include>registry.properties</include>
+ <include>log4j.properties</include>
+ <include>host.xml</include>
+ <include>persistence.xml</include>
+ <include>provenance.sql</include>
+ <include>gfac-config.xml</include>
+ <include>PBSTemplate.xslt</include>
+ <include>SLURMTemplate.xslt</include>
+ <include>SGETemplate.xslt</include>
+ <include>gsissh.properties</include>
+ </includes>
+ </fileSet>
+
+ <!-- ********************** Copy Axis2 startup scripts to stand alone server
+ ********************** -->
+ <fileSet>
+ <directory>src/main/resources/axis2-standalone-bin</directory>
+ <outputDirectory>bin</outputDirectory>
+ <fileMode>777</fileMode>
+ <includes>
+ <include>*.sh</include>
+ <include>*.bat</include>
+ </includes>
+ </fileSet>
+
+ <fileSet>
+ <directory>src/main/resources/conf</directory>
+ <outputDirectory>bin</outputDirectory>
+ <includes>
+ <include>**/*</include>
+ </includes>
+ </fileSet>
+
+ <!-- ********************** Copy samples ********************** -->
+ <fileSet>
+ <directory>${project.build.directory}/samples/applications
+ </directory>
+ <outputDirectory>samples</outputDirectory>
+ <includes>
+ <include>*.sh</include>
+ <include>*.bat</include>
+ </includes>
+ </fileSet>
+
+ </fileSets>
+
+ <dependencySets>
+ <dependencySet>
+ <outputDirectory>lib</outputDirectory>
+ <outputFileNameMapping>${artifact.artifactId}.${artifact.extension}
+ </outputFileNameMapping>
+ <includes>
+ <include>org.apache.derby:derby:jar</include>
+ <include>org.apache.derby:derbytools:jar</include>
+ <include>org.apache.derby:derbynet:jar</include>
+ <include>org.apache.derby:derbyclient:jar</include>
+ </includes>
+ </dependencySet>
+ <dependencySet>
+ <outputDirectory>lib</outputDirectory>
+ <includes>
+ <include>org.slf4j:slf4j-api:jar</include>
+ <include>org.slf4j:slf4j-jcl:jar</include>
+ <include>org.slf4j:slf4j-log4j12:jar</include>
+ <include>log4j:log4j:jar</include>
+ <include>javax.jcr:jcr:jar</include>
+ <include>commons-collections:commons-collections</include>
+ <include>commons-configuration:commons-configuration</include>
+ <include>commons-lang:commons-lang</include>
+ <include>commons-io:commons-io</include>
+ <include>org.apache.xmlbeans:xmlbeans</include>
+ <include>org.apache.airavata:airavata-standalone-server:jar
+ </include>
+ <include>org.apache.airavata:airavata-common-utils:jar</include>
+ <include>org.apache.airavata:airavata-orchestrator-service:jar
+ </include>
+ <include>org.apache.airavata:airavata-orchestrator-core:jar
+ </include>
+ <include>org.apache.airavata:airavata-gfac-schema-utils:jar
+ </include>
+ <include>org.apache.airavata:airavata-workflow-execution-context:jar
+ </include>
+ <include>org.apache.airavata:airavata-registry-cpi:jar</include>
+ <include>org.apache.airavata:airavata-jpa-registry:jar</include>
+ <include>org.apache.airavata:app-catalog-cpi:jar</include>
+ <include>org.apache.airavata:app-catalog-data:jar</include>
+ <include>org.apache.airavata:airavata-data-models:jar</include>
+ <include>org.apache.airavata:airavata-credential-store:jar</include>
+ <include>org.apache.airavata:airavata-gfac-core:jar</include>
+ <include>org.apache.airavata:airavata-gfac-stubs:jar</include>
+ <include>org.apache.airavata:airavata-message-monitor:jar</include>
+ <include>org.apache.airavata:airavata-workflow-model-core:jar
+ </include>
+ <include>org.apache.airavata:airavata-messenger-commons:jar
+ </include>
+ <include>org.apache.airavata:airavata-messenger-client:jar</include>
+ <include>org.apache.airavata:airavata-workflow-engine:jar</include>
+ <include>org.apache.airavata:airavata-messaging-core:jar</include>
+ <include>org.apache.airavata:airavata-model-utils:jar</include>
+ <include>org.apache.airavata:airavata-api-stubs:jar</include>
+ <include>org.apache.openjpa:openjpa-all:jar</include>
+ <include>org.bouncycastle:bcprov-jdk15on</include>
+ <include>javax.servlet:javax.servlet-api</include>
+ <include>xerces:xercesImpl:jar:2.9.1</include>
+ <include>com.ibm.icu:icu4j</include>
+ <include>com.google.guava:guava</include>
+ <include>org.apache.xmlbeans:xmlbeans</include>
+ <include>org.apache.thrift:libthrift:jar:0.9.1</include>
+ <include>commons-cli:commons-cli</include>
+ <include>commons-codec:commons-codec</include>
+ <include>com.rabbitmq:amqp-client</include>
+ <include>org.apache.zookeeper:zookeeper</include>
+ </includes>
+ </dependencySet>
+
+ </dependencySets>
+
+</assembly>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a133fa8c/modules/distribution/orchestrator-server/src/main/assembly/src-assembly.xml
----------------------------------------------------------------------
diff --git a/modules/distribution/orchestrator-server/src/main/assembly/src-assembly.xml b/modules/distribution/orchestrator-server/src/main/assembly/src-assembly.xml
new file mode 100644
index 0000000..6a093ed
--- /dev/null
+++ b/modules/distribution/orchestrator-server/src/main/assembly/src-assembly.xml
@@ -0,0 +1,75 @@
+<!--Licensed to the Apache Software Foundation (ASF) under one
+ ~ or more contributor license agreements. See the NOTICE file
+ ~ distributed with this work for additional information
+ ~ regarding copyright ownership. The ASF licenses this file
+ ~ to you under the Apache License, Version 2.0 (the
+ ~ "License"); you may not use this file except in compliance
+ ~ with the License. You may obtain a copy of the License at
+ ~
+ ~ http://www.apache.org/licenses/LICENSE-2.0
+ ~
+ ~ Unless required by applicable law or agreed to in writing,
+ ~ software distributed under the License is distributed on an
+ ~ "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ ~ KIND, either express or implied. See the License for the
+ ~ specific language governing permissions and limitations
+ ~ under the License.
+ -->
+
+<assembly>
+ <id>src</id>
+ <includeBaseDirectory>true</includeBaseDirectory>
+ <baseDirectory>${archieve.name}-${version}</baseDirectory>
+ <formats>
+ <format>tar.gz</format>
+ <format>zip</format>
+ </formats>
+
+ <fileSets>
+ <fileSet>
+ <directory>../..</directory>
+ <outputDirectory></outputDirectory>
+ <includes>
+ <include>NOTICE</include>
+ <include>LICENSE</include>
+ <include>README</include>
+ <include>RELEASE_NOTES</include>
+ <include>DISCLAIMER</include>
+ <include>INSTALL</include>
+ </includes>
+ <filtered>true</filtered>
+ </fileSet>
+ <fileSet>
+ <directory>../..</directory>
+ <outputDirectory></outputDirectory>
+ <useDefaultExcludes>true</useDefaultExcludes>
+ <includes>
+ <include>pom.xml</include>
+ <include>modules/**</include>
+ <include>samples/**</include>
+ </includes>
+
+ <excludes>
+ <!-- Exclusions from org.apache.resources:apache-source-release-assembly-descriptor.
+ Note that they assume that all sources are located under an "src" directory. This
+ is not the case for Axis2, which doesn't use the standard Maven 2 conventions.
+ Thus we may still encounter some issues here. -->
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/).*${project.build.directory}.*]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?maven-eclipse\.xml]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.project]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.classpath]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?[^/]*\.iws]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?[^/]*\.ipr]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?[^/]*\.iml]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.settings(/.*)?]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.externalToolBuilders(/.*)?]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.deployables(/.*)?]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?\.wtpmodules(/.*)?]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?cobertura\.ser]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?pom\.xml\.releaseBackup]</exclude>
+ <exclude>%regex[(?!((?!${project.build.directory}/)[^/]+/)*src/)(.*/)?release\.properties]</exclude>
+ </excludes>
+
+ </fileSet>
+ </fileSets>
+</assembly>
http://git-wip-us.apache.org/repos/asf/airavata/blob/a133fa8c/modules/distribution/orchestrator-server/src/main/resources/INSTALL
----------------------------------------------------------------------
diff --git a/modules/distribution/orchestrator-server/src/main/resources/INSTALL b/modules/distribution/orchestrator-server/src/main/resources/INSTALL
new file mode 100644
index 0000000..0324e61
--- /dev/null
+++ b/modules/distribution/orchestrator-server/src/main/resources/INSTALL
@@ -0,0 +1,55 @@
+Installing Apache Airavata 0.11
+-------------------------------
+
+Prerequisites
+-------------
+Java 1.5 or later
+Maven (tested on v 3.0.2)
+
+Build Apache Airavata from Source
+---------------------------------
+* Unzip/untar the source file or check out from svn.
+* cd to project folder and type
+ $ mvn clean install
+ Note: in order to skip tests use the command
+ $ mvn clean install -Dmaven.test.skip=true
+* The compressed binary distribution is created at <PROJECT DIR>/modules/distribution/airavata-server/target/apache-airavata-server-<airavata-version>-bin.zip
+
+Installing the Airavata Server
+------------------------------
+No installation is necessary. Just extract the compressed distribution.
+Note: For customizing the default configurations of the Airavata Server please
+ refer to Airavata web-site (http://airavata.apache.org/) and/or Airavata
+ mailing lists (http://airavata.apache.org/community/mailing-lists.html)
+
+Starting Apache Airavata Server
+-------------------------------
+* Navigate to <AIRAVATA_HOME>/bin
+* type for following command to start the Airavata Server
+ MAC/Unix systems
+ $ sh airavata-server.sh
+ Windows
+ > airavata-server.bat
+ Note: Pass "-h" as parameters to see more options when starting the server
+
+Starting Apache Derby Server
+-------------------------------
+Users have the option to star the derby server separately
+* Navigate to <AIRAVATA_HOME>/bin
+* type for following command to start the Airavata Server
+ MAC/Unix systems
+ $ sh derby.sh
+ Windows
+ <Not supported in this version>
+ Note: Pass "-h" as parameters to see more options when starting the server
+
+Running Tests
+-------------
+Once the binary is unzipped, instructions to run the tests should be followed from README
+
+Tutorials
+----------
+The airavata website has instructions for basic tutorials:
+* For basic understanding of how Airavata works - http://airavata.apache.org/documentation/tutorials/airavata-in-5-minutes.html
+* Describing and executing applications using Airavata - http://airavata.apache.org/documentation/tutorials/airavata-in-10-minutes.html
+* Advanced tutorial to provide understanding of how to run sample workflows distributed with Airavata - http://airavata.apache.org/documentation/tutorials/advanced-workflow-samples.html