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Posted to user@uima.apache.org by Chris Roeder <ch...@ucdenver.edu> on 2012/08/07 01:35:46 UTC
ConceptMapper 2.4.0 ?
Pardon me if this has been asked before.
Is a version of ConceptMapper for UIMA 2.4.0 planned?
thanks
-Chris
--
Christophe Roeder | Software Engineer
University of Colorado Anschutz Medical Campus | Computational Bioscience Program
303-724-7562 | chris.roeder@ucdenver.edu | http://compbio.ucdenver.edu
Re: ConceptMapper 2.4.0 ?
Posted by Chris Roeder <ch...@ucdenver.edu>.
On 8/7/12 10:39 AM, Richard Eckart de Castilho wrote:
> Am 07.08.2012 um 18:33 schrieb Chris Roeder:
>
>> On 8/7/12 10:23 AM, Marshall Schor wrote:
>>> ConceptMapper hasn't changed since the 2.3.1 release, so there are no pending
>>> new release planned.
>>
>> I ask because it seems ConceptMapper's poms depend on 2.3.1,
>> which (seems to) conflicts with 2.4.0 from elsewhere.
>>
>> Is there a solution to this that I haven't found ?
>
> Unless you depend on UIMA-AS, it should be possible that you generally upgrade to UIMA 2.4.0.
> I never had any upgrade compatibility problems.
Maybe it's a Maven question.
I've been busy playing whack-a-mole
(http://en.wikipedia.org/wiki/Whac-A-Mole look under "Colloquial usage")
with other problems and assumed the dependencies of my project on 2.4.0
and ConceptMapper's dependencies on 2.3.1 would either conflict or cause
ambiguity. I've heard suggestions that the order matters. I'd prefer to
avoid ordering dependencies in a system that portends to be stateless
or declarative, but will easily sacrifice that for something that works.
-Chris
>
> -- Richard
>
Re: ConceptMapper 2.4.0 ?
Posted by Himanshu Gahlot <hi...@gmail.com>.
I recently used ConceptMapper with UIMA 2.4.0 by updating the various
deprecated clsses and it worked fine. I just haven't got time to contribute
it back to UIMA. Apart from the updates that Michael is talking about one
major update is the use of UimaContext in place of AnnotatorContext. And
the update in:
public class ConceptMapper extends Annotator_ImplBase implements
TextAnnotator
is
public class ConceptMapper extends JCasAnnotator_ImplBase
Himanshu
On Tue, Aug 7, 2012 at 10:23 AM, Michael Tanenblatt <slothrop@park-slope.net
> wrote:
> The one thing I know needs to be updated is:
>
> public class ConceptMapper extends Annotator_ImplBase implements
> TextAnnotator
>
> Both Annotator_ImplBase and TextAnnotator have been deprecated. It is
> probably no big deal to fix, just a bunch of drudgery. Not sure why I
> haven't gotten to it yet...
>
> ..Michael
>
> On Aug 7, 2012, at 12:58 PM, Chris Roeder wrote:
>
> > On 8/7/12 10:51 AM, Michael Tanenblatt wrote:
> >> Ideally, if I had a few spare cycles, I'd at least update the code to
> remove deprecated stuff.
> >> Of course, this is open source, so if anyone wants to add features,….
> >
> > If that's a request for help removing the deprecated stuff, as a
> long-time user of UIMA, I'm due to contribute. I might need a little more
> info though.
> >
> > -Chris
> >
> >>
> >> ..Michael
> >>
> >> On Aug 7, 2012, at 12:39 PM, Richard Eckart de Castilho wrote:
> >>
> >>> Am 07.08.2012 um 18:33 schrieb Chris Roeder:
> >>>
> >>>> On 8/7/12 10:23 AM, Marshall Schor wrote:
> >>>>> ConceptMapper hasn't changed since the 2.3.1 release, so there are
> no pending
> >>>>> new release planned.
> >>>>
> >>>> I ask because it seems ConceptMapper's poms depend on 2.3.1,
> >>>> which (seems to) conflicts with 2.4.0 from elsewhere.
> >>>>
> >>>> Is there a solution to this that I haven't found ?
> >>>
> >>> Unless you depend on UIMA-AS, it should be possible that you generally
> upgrade to UIMA 2.4.0.
> >>> I never had any upgrade compatibility problems.
> >>>
> >>> -- Richard
> >>>
> >>> --
> >>> -------------------------------------------------------------------
> >>> Richard Eckart de Castilho
> >>> Technical Lead
> >>> Ubiquitous Knowledge Processing Lab (UKP-TUD)
> >>> FB 20 Computer Science Department
> >>> Technische Universität Darmstadt
> >>> Hochschulstr. 10, D-64289 Darmstadt, Germany
> >>> phone [+49] (0)6151 16-7477, fax -5455, room S2/02/B117
> >>> eckart@ukp.informatik.tu-darmstadt.de
> >>> www.ukp.tu-darmstadt.de
> >>> Web Research at TU Darmstadt (WeRC) www.werc.tu-darmstadt.de
> >>> -------------------------------------------------------------------
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>
> >
> >
> > --
> > Christophe Roeder | Software Engineer
> > University of Colorado Anschutz Medical Campus | Computational
> Bioscience Program
> > 303-724-7562 | chris.roeder@ucdenver.edu | http://compbio.ucdenver.edu
>
>
Re: ConceptMapper 2.4.0 ?
Posted by Michael Tanenblatt <sl...@park-slope.net>.
The one thing I know needs to be updated is:
public class ConceptMapper extends Annotator_ImplBase implements TextAnnotator
Both Annotator_ImplBase and TextAnnotator have been deprecated. It is probably no big deal to fix, just a bunch of drudgery. Not sure why I haven't gotten to it yet...
..Michael
On Aug 7, 2012, at 12:58 PM, Chris Roeder wrote:
> On 8/7/12 10:51 AM, Michael Tanenblatt wrote:
>> Ideally, if I had a few spare cycles, I'd at least update the code to remove deprecated stuff.
>> Of course, this is open source, so if anyone wants to add features,….
>
> If that's a request for help removing the deprecated stuff, as a long-time user of UIMA, I'm due to contribute. I might need a little more info though.
>
> -Chris
>
>>
>> ..Michael
>>
>> On Aug 7, 2012, at 12:39 PM, Richard Eckart de Castilho wrote:
>>
>>> Am 07.08.2012 um 18:33 schrieb Chris Roeder:
>>>
>>>> On 8/7/12 10:23 AM, Marshall Schor wrote:
>>>>> ConceptMapper hasn't changed since the 2.3.1 release, so there are no pending
>>>>> new release planned.
>>>>
>>>> I ask because it seems ConceptMapper's poms depend on 2.3.1,
>>>> which (seems to) conflicts with 2.4.0 from elsewhere.
>>>>
>>>> Is there a solution to this that I haven't found ?
>>>
>>> Unless you depend on UIMA-AS, it should be possible that you generally upgrade to UIMA 2.4.0.
>>> I never had any upgrade compatibility problems.
>>>
>>> -- Richard
>>>
>>> --
>>> -------------------------------------------------------------------
>>> Richard Eckart de Castilho
>>> Technical Lead
>>> Ubiquitous Knowledge Processing Lab (UKP-TUD)
>>> FB 20 Computer Science Department
>>> Technische Universität Darmstadt
>>> Hochschulstr. 10, D-64289 Darmstadt, Germany
>>> phone [+49] (0)6151 16-7477, fax -5455, room S2/02/B117
>>> eckart@ukp.informatik.tu-darmstadt.de
>>> www.ukp.tu-darmstadt.de
>>> Web Research at TU Darmstadt (WeRC) www.werc.tu-darmstadt.de
>>> -------------------------------------------------------------------
>>>
>>>
>>>
>>>
>>>
>>>
>>
>
>
> --
> Christophe Roeder | Software Engineer
> University of Colorado Anschutz Medical Campus | Computational Bioscience Program
> 303-724-7562 | chris.roeder@ucdenver.edu | http://compbio.ucdenver.edu
Re: ConceptMapper 2.4.0 ?
Posted by Chris Roeder <ch...@ucdenver.edu>.
On 8/7/12 10:51 AM, Michael Tanenblatt wrote:
> Ideally, if I had a few spare cycles, I'd at least update the code to remove deprecated stuff.
> Of course, this is open source, so if anyone wants to add features,….
If that's a request for help removing the deprecated stuff, as a long-time user
of UIMA, I'm due to contribute. I might need a little more info though.
-Chris
>
> ..Michael
>
> On Aug 7, 2012, at 12:39 PM, Richard Eckart de Castilho wrote:
>
>> Am 07.08.2012 um 18:33 schrieb Chris Roeder:
>>
>>> On 8/7/12 10:23 AM, Marshall Schor wrote:
>>>> ConceptMapper hasn't changed since the 2.3.1 release, so there are no pending
>>>> new release planned.
>>>
>>> I ask because it seems ConceptMapper's poms depend on 2.3.1,
>>> which (seems to) conflicts with 2.4.0 from elsewhere.
>>>
>>> Is there a solution to this that I haven't found ?
>>
>> Unless you depend on UIMA-AS, it should be possible that you generally upgrade to UIMA 2.4.0.
>> I never had any upgrade compatibility problems.
>>
>> -- Richard
>>
>> --
>> -------------------------------------------------------------------
>> Richard Eckart de Castilho
>> Technical Lead
>> Ubiquitous Knowledge Processing Lab (UKP-TUD)
>> FB 20 Computer Science Department
>> Technische Universität Darmstadt
>> Hochschulstr. 10, D-64289 Darmstadt, Germany
>> phone [+49] (0)6151 16-7477, fax -5455, room S2/02/B117
>> eckart@ukp.informatik.tu-darmstadt.de
>> www.ukp.tu-darmstadt.de
>> Web Research at TU Darmstadt (WeRC) www.werc.tu-darmstadt.de
>> -------------------------------------------------------------------
>>
>>
>>
>>
>>
>>
>
--
Christophe Roeder | Software Engineer
University of Colorado Anschutz Medical Campus | Computational Bioscience Program
303-724-7562 | chris.roeder@ucdenver.edu | http://compbio.ucdenver.edu
Re: ConceptMapper 2.4.0 ?
Posted by Michael Tanenblatt <sl...@park-slope.net>.
Ideally, if I had a few spare cycles, I'd at least update the code to remove deprecated stuff. Of course, this is open source, so if anyone wants to add features,….
..Michael
On Aug 7, 2012, at 12:39 PM, Richard Eckart de Castilho wrote:
> Am 07.08.2012 um 18:33 schrieb Chris Roeder:
>
>> On 8/7/12 10:23 AM, Marshall Schor wrote:
>>> ConceptMapper hasn't changed since the 2.3.1 release, so there are no pending
>>> new release planned.
>>
>> I ask because it seems ConceptMapper's poms depend on 2.3.1,
>> which (seems to) conflicts with 2.4.0 from elsewhere.
>>
>> Is there a solution to this that I haven't found ?
>
> Unless you depend on UIMA-AS, it should be possible that you generally upgrade to UIMA 2.4.0.
> I never had any upgrade compatibility problems.
>
> -- Richard
>
> --
> -------------------------------------------------------------------
> Richard Eckart de Castilho
> Technical Lead
> Ubiquitous Knowledge Processing Lab (UKP-TUD)
> FB 20 Computer Science Department
> Technische Universität Darmstadt
> Hochschulstr. 10, D-64289 Darmstadt, Germany
> phone [+49] (0)6151 16-7477, fax -5455, room S2/02/B117
> eckart@ukp.informatik.tu-darmstadt.de
> www.ukp.tu-darmstadt.de
> Web Research at TU Darmstadt (WeRC) www.werc.tu-darmstadt.de
> -------------------------------------------------------------------
>
>
>
>
>
>
Re: ConceptMapper 2.4.0 ?
Posted by Richard Eckart de Castilho <ec...@ukp.informatik.tu-darmstadt.de>.
Am 07.08.2012 um 18:33 schrieb Chris Roeder:
> On 8/7/12 10:23 AM, Marshall Schor wrote:
>> ConceptMapper hasn't changed since the 2.3.1 release, so there are no pending
>> new release planned.
>
> I ask because it seems ConceptMapper's poms depend on 2.3.1,
> which (seems to) conflicts with 2.4.0 from elsewhere.
>
> Is there a solution to this that I haven't found ?
Unless you depend on UIMA-AS, it should be possible that you generally upgrade to UIMA 2.4.0.
I never had any upgrade compatibility problems.
-- Richard
--
-------------------------------------------------------------------
Richard Eckart de Castilho
Technical Lead
Ubiquitous Knowledge Processing Lab (UKP-TUD)
FB 20 Computer Science Department
Technische Universität Darmstadt
Hochschulstr. 10, D-64289 Darmstadt, Germany
phone [+49] (0)6151 16-7477, fax -5455, room S2/02/B117
eckart@ukp.informatik.tu-darmstadt.de
www.ukp.tu-darmstadt.de
Web Research at TU Darmstadt (WeRC) www.werc.tu-darmstadt.de
-------------------------------------------------------------------
Re: ConceptMapper 2.4.0 ?
Posted by Chris Roeder <ch...@ucdenver.edu>.
On 8/7/12 11:02 AM, Marshall Schor wrote:
>
> On 8/7/2012 12:33 PM, Chris Roeder wrote:
>> On 8/7/12 10:23 AM, Marshall Schor wrote:
>>> ConceptMapper hasn't changed since the 2.3.1 release, so there are no pending
>>> new release planned.
>>
>> I ask because it seems ConceptMapper's poms depend on 2.3.1,
>> which (seems to) conflicts with 2.4.0 from elsewhere.
> Can you post some details about the conflict that you see?
They are likely conflated by other problems I'm chasing down.
Thanks for your offer, and if they remain, I will narrow it
down to a reproducible case and ask more clearly for help.
In the mean time, the nugget I had forgotten, that settles
my mind regarding Richard's suggestion, is that in the face
of ambiguity, Maven is supposed to pick the highest version.
I assume 2.4.0 is compatible with 2.3.1 as regards ConceptMapper,
so it's OK to let maven choose 2.4.0.
thanks
-Chris
> -Marshall
>
>>
>> Is there a solution to this that I haven't found ?
>>
>> thanks
>> -Chris
>>
>>
>>>
>>> -Marshall
>>>
>>> On 8/6/2012 7:35 PM, Chris Roeder wrote:
>>>> Pardon me if this has been asked before.
>>>>
>>>> Is a version of ConceptMapper for UIMA 2.4.0 planned?
>>>>
>>>> thanks
>>>> -Chris
>>>>
>>>>
>>>
>>
>>
>>
>
--
Christophe Roeder | Software Engineer
University of Colorado Anschutz Medical Campus | Computational Bioscience Program
303-724-7562 | chris.roeder@ucdenver.edu | http://compbio.ucdenver.edu
Re: ConceptMapper 2.4.0 ?
Posted by Marshall Schor <ms...@schor.com>.
On 8/7/2012 12:33 PM, Chris Roeder wrote:
> On 8/7/12 10:23 AM, Marshall Schor wrote:
>> ConceptMapper hasn't changed since the 2.3.1 release, so there are no pending
>> new release planned.
>
> I ask because it seems ConceptMapper's poms depend on 2.3.1,
> which (seems to) conflicts with 2.4.0 from elsewhere.
Can you post some details about the conflict that you see?
-Marshall
>
> Is there a solution to this that I haven't found ?
>
> thanks
> -Chris
>
>
>>
>> -Marshall
>>
>> On 8/6/2012 7:35 PM, Chris Roeder wrote:
>>> Pardon me if this has been asked before.
>>>
>>> Is a version of ConceptMapper for UIMA 2.4.0 planned?
>>>
>>> thanks
>>> -Chris
>>>
>>>
>>
>
>
>
Re: ConceptMapper 2.4.0 ?
Posted by Chris Roeder <ch...@ucdenver.edu>.
On 8/7/12 10:23 AM, Marshall Schor wrote:
> ConceptMapper hasn't changed since the 2.3.1 release, so there are no pending
> new release planned.
I ask because it seems ConceptMapper's poms depend on 2.3.1,
which (seems to) conflicts with 2.4.0 from elsewhere.
Is there a solution to this that I haven't found ?
thanks
-Chris
>
> -Marshall
>
> On 8/6/2012 7:35 PM, Chris Roeder wrote:
>> Pardon me if this has been asked before.
>>
>> Is a version of ConceptMapper for UIMA 2.4.0 planned?
>>
>> thanks
>> -Chris
>>
>>
>
Re: ConceptMapper 2.4.0 ?
Posted by Marshall Schor <ms...@schor.com>.
ConceptMapper hasn't changed since the 2.3.1 release, so there are no pending
new release planned.
-Marshall
On 8/6/2012 7:35 PM, Chris Roeder wrote:
> Pardon me if this has been asked before.
>
> Is a version of ConceptMapper for UIMA 2.4.0 planned?
>
> thanks
> -Chris
>
>