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Posted to commits@ctakes.apache.org by se...@apache.org on 2017/11/21 15:26:01 UTC
svn commit: r1815934 [12/12] - in
/ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated:
./ GenSurg_UmbilicalHernia_1/ OBGYN_Gen_Abscess_1/
OBGYN_HysterectomyAndBSO_1/ OBGYN_IUD_1/ OBGYN_LaborProgr...
Added: ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_RO_AAA_1/VascSurg_RO_AAA_1.ctakes_4.dave.completed.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_RO_AAA_1/VascSurg_RO_AAA_1.ctakes_4.dave.completed.xml?rev=1815934&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_RO_AAA_1/VascSurg_RO_AAA_1.ctakes_4.dave.completed.xml (added)
+++ ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_RO_AAA_1/VascSurg_RO_AAA_1.ctakes_4.dave.completed.xml Tue Nov 21 15:26:00 2017
@@ -0,0 +1,765 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<data>
+ <info>
+ <savetime>12:17:50 09-01-2017</savetime>
+ <progress>completed</progress>
+ </info>
+
+ <schema path="./" protocol="file">temporal.schema.xml</schema>
+
+ <annotations>
+ <entity>
+ <id>1@e@VascSurg_RO_AAA_1@dave</id>
+ <span>238,240</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0027051</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf>2@e@VascSurg_RO_AAA_1@dave</historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>2@e@VascSurg_RO_AAA_1@dave</id>
+ <span>218,221</span>
+ <type>historyOf_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <historyOf_normalization>true</historyOf_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>3@e@VascSurg_RO_AAA_1@dave</id>
+ <span>275,283</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0522776</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf>2@e@VascSurg_RO_AAA_1@dave</historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>4@e@VascSurg_RO_AAA_1@dave</id>
+ <span>328,334;342,346</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0412523</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>5@e@VascSurg_RO_AAA_1@dave</id>
+ <span>328,334</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0003483</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>6@e@VascSurg_RO_AAA_1@dave</id>
+ <span>377,380</span>
+ <type>uncertainty_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <uncertainty_indicator_normalization>indicator_present</uncertainty_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>7@e@VascSurg_RO_AAA_1@dave</id>
+ <span>381,396</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0007273</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator>6@e@VascSurg_RO_AAA_1@dave</uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>8@e@VascSurg_RO_AAA_1@dave</id>
+ <span>381,388</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0007272</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>9@e@VascSurg_RO_AAA_1@dave</id>
+ <span>450,458</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0086543</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>10@e@VascSurg_RO_AAA_1@dave</id>
+ <span>480,489</span>
+ <type>negation_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <negation_indicator_normalization>negation_present</negation_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>11@e@VascSurg_RO_AAA_1@dave</id>
+ <span>460,475</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator>10@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0007273</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>12@e@VascSurg_RO_AAA_1@dave</id>
+ <span>460,467</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0007272</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>13@e@VascSurg_RO_AAA_1@dave</id>
+ <span>511,514</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0162871</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>14@e@VascSurg_RO_AAA_1@dave</id>
+ <span>515,524</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0220908</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>16@e@VascSurg_RO_AAA_1@dave</id>
+ <span>582,584</span>
+ <type>negation_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <negation_indicator_normalization>negation_present</negation_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>17@e@VascSurg_RO_AAA_1@dave</id>
+ <span>585,591</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator>16@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0015967</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>18@e@VascSurg_RO_AAA_1@dave</id>
+ <span>592,598</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator>16@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0085593</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>19@e@VascSurg_RO_AAA_1@dave</id>
+ <span>599,611</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator>16@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0028081</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>20@e@VascSurg_RO_AAA_1@dave</id>
+ <span>616,622</span>
+ <type>negation_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <negation_indicator_normalization>negation_present</negation_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>21@e@VascSurg_RO_AAA_1@dave</id>
+ <span>623,626</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator>20@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0013404</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>22@e@VascSurg_RO_AAA_1@dave</id>
+ <span>628,629</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator>20@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0027497</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>23@e@VascSurg_RO_AAA_1@dave</id>
+ <span>630,631</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator>20@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0042963</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>24@e@VascSurg_RO_AAA_1@dave</id>
+ <span>633,643</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator>20@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0008031</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>25@e@VascSurg_RO_AAA_1@dave</id>
+ <span>633,638</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0817096</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>26@e@VascSurg_RO_AAA_1@dave</id>
+ <span>645,647</span>
+ <type>negation_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <negation_indicator_normalization>negation_present</negation_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>27@e@VascSurg_RO_AAA_1@dave</id>
+ <span>648,652</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator>26@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0030193</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>28@e@VascSurg_RO_AAA_1@dave</id>
+ <span>676,678</span>
+ <type>negation_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <negation_indicator_normalization>negation_present</negation_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>29@e@VascSurg_RO_AAA_1@dave</id>
+ <span>679,685;701,709</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator>28@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0007280</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>30@e@VascSurg_RO_AAA_1@dave</id>
+ <span>701,709</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0007272</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>31@e@VascSurg_RO_AAA_1@dave</id>
+ <span>794,800</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0242845</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>32@e@VascSurg_RO_AAA_1@dave</id>
+ <span>873,882</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0242845</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>33@e@VascSurg_RO_AAA_1@dave</id>
+ <span>894,897</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator>38@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0162871</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>34@e@VascSurg_RO_AAA_1@dave</id>
+ <span>955,958</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0162871</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>35@e@VascSurg_RO_AAA_1@dave</id>
+ <span>987,990</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator>37@e@VascSurg_RO_AAA_1@dave</negation_indicator>
+ <associatedCode>C0162871</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>36@e@VascSurg_RO_AAA_1@dave</id>
+ <span>1055,1058</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0162871</associatedCode>
+ <conditional></conditional>
+ <generic>40@e@VascSurg_RO_AAA_1@dave</generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>37@e@VascSurg_RO_AAA_1@dave</id>
+ <span>967,970</span>
+ <type>negation_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <negation_indicator_normalization>negation_present</negation_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>38@e@VascSurg_RO_AAA_1@dave</id>
+ <span>887,889</span>
+ <type>negation_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <negation_indicator_normalization>negation_present</negation_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>39@e@VascSurg_RO_AAA_1@dave</id>
+ <span>942,950</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0220908</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>40@e@VascSurg_RO_AAA_1@dave</id>
+ <span>1002,1016</span>
+ <type>generic_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <generic_normalization>true</generic_normalization>
+ </properties>
+ </entity>
+
+ </annotations>
+
+</data>
\ No newline at end of file
Added: ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_RO_DVT_1/VascSurg_RO_DVT_1.ctakes_4.dave.completed.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_RO_DVT_1/VascSurg_RO_DVT_1.ctakes_4.dave.completed.xml?rev=1815934&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_RO_DVT_1/VascSurg_RO_DVT_1.ctakes_4.dave.completed.xml (added)
+++ ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/VascSurg_RO_DVT_1/VascSurg_RO_DVT_1.ctakes_4.dave.completed.xml Tue Nov 21 15:26:00 2017
@@ -0,0 +1,766 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<data>
+ <info>
+ <savetime>13:21:28 09-01-2017</savetime>
+ <progress>completed</progress>
+ </info>
+
+ <schema path="./" protocol="file">temporal.schema.xml</schema>
+
+ <annotations>
+ <entity>
+ <id>1@e@VascSurg_RO_DVT_1@dave</id>
+ <span>221,224</span>
+ <type>historyOf_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <historyOf_normalization>true</historyOf_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>2@e@VascSurg_RO_DVT_1@dave</id>
+ <span>241,244</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0020538</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf>1@e@VascSurg_RO_DVT_1@dave</historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>3@e@VascSurg_RO_DVT_1@dave</id>
+ <span>246,249</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C1956346</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf>1@e@VascSurg_RO_DVT_1@dave</historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>4@e@VascSurg_RO_DVT_1@dave</id>
+ <span>251,255</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0004238</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf>1@e@VascSurg_RO_DVT_1@dave</historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>5@e@VascSurg_RO_DVT_1@dave</id>
+ <span>257,264</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0011849</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf>1@e@VascSurg_RO_DVT_1@dave</historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>6@e@VascSurg_RO_DVT_1@dave</id>
+ <span>309,312</span>
+ <type>uncertainty_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <uncertainty_indicator_normalization>indicator_present</uncertainty_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>7@e@VascSurg_RO_DVT_1@dave</id>
+ <span>315,318</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0149871</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator>6@e@VascSurg_RO_DVT_1@dave</uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>8@e@VascSurg_RO_DVT_1@dave</id>
+ <span>325,328</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0230415</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>9@e@VascSurg_RO_DVT_1@dave</id>
+ <span>329,334</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0013604</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>10@e@VascSurg_RO_DVT_1@dave</id>
+ <span>354,356</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0031809</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>11@e@VascSurg_RO_DVT_1@dave</id>
+ <span>370,373</span>
+ <type>historyOf_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <historyOf_normalization>true</historyOf_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>12@e@VascSurg_RO_DVT_1@dave</id>
+ <span>379,402</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0191200</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf>11@e@VascSurg_RO_DVT_1@dave</historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>13@e@VascSurg_RO_DVT_1@dave</id>
+ <span>379,393</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0036186</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>14@e@VascSurg_RO_DVT_1@dave</id>
+ <span>412,423</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0191017</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf>11@e@VascSurg_RO_DVT_1@dave</historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>15@e@VascSurg_RO_DVT_1@dave</id>
+ <span>443,446</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0023216</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>16@e@VascSurg_RO_DVT_1@dave</id>
+ <span>551,557</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0221198</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>17@e@VascSurg_RO_DVT_1@dave</id>
+ <span>565,570</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0230347</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>18@e@VascSurg_RO_DVT_1@dave</id>
+ <span>498,505</span>
+ <type>Devices</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0038969</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>19@e@VascSurg_RO_DVT_1@dave</id>
+ <span>592,601</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0398266</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>20@e@VascSurg_RO_DVT_1@dave</id>
+ <span>646,652</span>
+ <type>negation_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <negation_indicator_normalization>negation_present</negation_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>21@e@VascSurg_RO_DVT_1@dave</id>
+ <span>653,655</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator>20@e@VascSurg_RO_DVT_1@dave</negation_indicator>
+ <associatedCode>C0008031</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>22@e@VascSurg_RO_DVT_1@dave</id>
+ <span>656,659</span>
+ <type>Sign_symptom</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <alleviating_factor></alleviating_factor>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <negation_indicator>20@e@VascSurg_RO_DVT_1@dave</negation_indicator>
+ <associatedCode>C0013404</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <exacerbating_factor></exacerbating_factor>
+ <course></course>
+ <body_location></body_location>
+ <severity></severity>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>23@e@VascSurg_RO_DVT_1@dave</id>
+ <span>935,937</span>
+ <type>negation_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <negation_indicator_normalization>negation_present</negation_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>24@e@VascSurg_RO_DVT_1@dave</id>
+ <span>938,941</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator>23@e@VascSurg_RO_DVT_1@dave</negation_indicator>
+ <associatedCode>C0149871</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>25@e@VascSurg_RO_DVT_1@dave</id>
+ <span>918,924</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0242845</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>26@e@VascSurg_RO_DVT_1@dave</id>
+ <span>909,917</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0230415</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>27@e@VascSurg_RO_DVT_1@dave</id>
+ <span>892,899</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0554756</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>28@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1007,1010</span>
+ <type>uncertainty_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <uncertainty_indicator_normalization>indicator_present</uncertainty_indicator_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>29@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1013,1016</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0149871</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator>28@e@VascSurg_RO_DVT_1@dave</uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>30@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1017,1020</span>
+ <type>historyOf_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <historyOf_normalization>true</historyOf_normalization>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>31@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1028,1036;1040,1054</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0191200</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>32@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1040,1054</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0036186</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>33@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1064,1075</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0191017</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>34@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1079,1088</span>
+ <type>Anatomical_site</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0230415</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>35@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1095,1102</span>
+ <type>Devices</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0038969</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>36@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1095,1102;1121,1128</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0184936</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>37@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1180,1201</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0750876</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>38@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1168,1175</span>
+ <type>Procedure</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator></negation_indicator>
+ <associatedCode>C0087111</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <historyOf></historyOf>
+ <device></device>
+ <start_time></start_time>
+ <duration></duration>
+ <end_time></end_time>
+ <relative_temporal_context></relative_temporal_context>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>39@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1271,1274</span>
+ <type>Disease_Disorder</type>
+ <parentsType>UMLSEntities</parentsType>
+ <properties>
+ <negation_indicator>40@e@VascSurg_RO_DVT_1@dave</negation_indicator>
+ <associatedCode>C0149871</associatedCode>
+ <conditional></conditional>
+ <generic></generic>
+ <subject></subject>
+ <uncertainty_indicator></uncertainty_indicator>
+ <alleviating_factor></alleviating_factor>
+ <associated_sign_or_symptom></associated_sign_or_symptom>
+ <course></course>
+ <exacerbating_factor></exacerbating_factor>
+ <duration></duration>
+ <start_time></start_time>
+ <end_time></end_time>
+ <historyOf></historyOf>
+ <relative_temporal_context></relative_temporal_context>
+ <severity></severity>
+ </properties>
+ </entity>
+
+ <entity>
+ <id>40@e@VascSurg_RO_DVT_1@dave</id>
+ <span>1258,1267</span>
+ <type>negation_indicator_class</type>
+ <parentsType>Attributes_general</parentsType>
+ <properties>
+ <negation_indicator_normalization>negation_present</negation_indicator_normalization>
+ </properties>
+ </entity>
+
+ </annotations>
+
+</data>
\ No newline at end of file
Added: ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/ctakes_4-schema.xml
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/ctakes_4-schema.xml?rev=1815934&view=auto
==============================================================================
--- ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/ctakes_4-schema.xml (added)
+++ ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/annotation/anafora_annotated/ctakes_4-schema.xml Tue Nov 21 15:26:00 2017
@@ -0,0 +1,337 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!-- Comments are placed inside these arrow-and-dash things -->
+<!-- Remember that anything that's an <entity> will have a span by default, and that Span doesn't need to be requested explicitly as a <property> -->
+<schema>
+ <defaultattribute>
+ <required>False</required>
+ </defaultattribute>
+ <definition>
+ <entities type="Attributes_general" color="">
+ <entity type="negation_indicator_class" color="F5BAD2" hotkey="o">
+ <properties>
+ <property input="choice" type="negation_indicator_normalization">negation_present,negation_absent
+ </property>
+ </properties>
+ </entity>
+ <entity type="uncertainty_indicator_class" color="F3BAF5" hotkey="u">
+ <properties>
+ <property input="choice" type="uncertainty_indicator_normalization">
+ indicator_present,indicator_absent
+ </property>
+ </properties>
+ </entity>
+ <entity type="subject_class" color="F3BAF5">
+ <properties>
+ <property input="choice" type="subject_normalization">patient, family_member, donor_family_member,
+ donor_other, other
+ </property>
+ </properties>
+ </entity>
+ <entity type="severity_class" color="DFBAF5">
+ <properties>
+ <property input="choice" type="severity_normalization">severe, moderate, slight, unmarked</property>
+ </properties>
+ </entity>
+ <entity type="course_class" color="CAF5BA">
+ <properties>
+ <property input="choice" type="course_normalization">changed, increased, decreased, improved,
+ worsened, resolved, unmarked
+ </property>
+ </properties>
+ </entity>
+ <entity type="generic_class" color="DDF5BA">
+ <properties>
+ <property input="choice" type="generic_normalization">true,false</property>
+ </properties>
+ </entity>
+ <entity type="conditional_class" color="F5F5BA" hotkey="q">
+ <properties>
+ <property input="choice" type="conditional_normalization">true, false</property>
+ </properties>
+ </entity>
+ <entity type="historyOf_indicator_class" color="F5D8BA" hotkey="h">
+ <properties>
+ <property input="choice" type="historyOf_normalization">true, false</property>
+ </properties>
+ </entity>
+ </entities>
+
+ <entities type="Attributes_medication" color="">
+ <entity type="Date" color="F55B89">
+ <properties>
+ <property input="text" type="day"></property>
+ <property input="text" type="month"></property>
+ <property input="text" type="year"></property>
+ </properties>
+ </entity>
+ <entity type="StrengthNumber" color="E35BF5">
+ <properties>
+ </properties>
+ </entity>
+ <entity type="StrengthUnit" color="985BF5">
+ <properties>
+ </properties>
+ </entity>
+ <entity type="Strength" color="625BF5">
+ <properties>
+ <property input="list" type="strength_number" maxLink="1" instanceOf="StrengthNumber"></property>
+ <property input="list" type="strength_unit" maxLink="1" instanceOf="StrengthUnit"></property>
+ </properties>
+ </entity>
+ <entity type="Dosage" color="FB96F5">
+ <properties>
+ <property input="text" type="dosage_values"></property>
+ </properties>
+ </entity>
+ <entity type="FrequencyNumber" color="5BD3F5">
+ <properties>
+ <property input="text" type="frequency_number_normalization"></property>
+ </properties>
+ </entity>
+ <entity type="FrequencyUnit" color="5BF5C7">
+ <properties>
+ <property input="choice" type="frequency_unit_values">undetermined, as_needed, hour, day, week,
+ month, every_other_day, other
+ </property>
+ </properties>
+ </entity>
+ <entity type="Frequency" color="62F55B">
+ <properties>
+ <property input="list" type="frequency_number" maxLink="1" instanceOf="FrequencyNumber"></property>
+ <property input="list" type="frequency_unit" maxLink="1" instanceOf="FrequencyUnit"></property>
+ </properties>
+ </entity>
+ <entity type="Duration" color="A5F55B">
+ <properties>
+ <property input="text" type="duration_values"></property>
+ </properties>
+ </entity>
+ <entity type="Route" color="DEF55B">
+ <properties>
+ <!-- Here, the initial comma means "No default value"-->
+ <property input="choice" type="route_values">,Topical, Enteral_Oral, Enteral_Gastric,
+ Enteral_Rectal, Parenteral_Intravenous, Parenteral_Intra-arterial, Parenteral_Intramuscular,
+ Parenteral_Intracardiac, Parenteral_Subcutaneous, Parenteral_Intrathecal,
+ Parenteral_Intraperiotoneal, Parenteral_Transdermal, Parenteral_Transmucosal, other,
+ undetermined
+ </property>
+ </properties>
+ </entity>
+ <entity type="Form" color="F5E05B">
+ <properties>
+ <property input="choice" type="form">,aerosol, capsule, cream, elixir, emulsion, enema, gel,
+ implant, inhalant, injection, liquid, lotion, lozenge, ointment, patch, pellet, pill, powder,
+ shampoo, soap, solution, spray, suppository, syrup, tablet, other
+ </property>
+ </properties>
+ </entity>
+ <entity type="StatusChange" color="F5BA5B">
+ <properties>
+ <property input="choice" type="change_status_value">start, stop, increase, decrease, noChange
+ </property>
+ </properties>
+ </entity>
+ <entity type="allergy_indicator_class" color="F5625B">
+ <properties>
+ <property input="choice" type="allergy_indicator_normalization">indicator_present,
+ indicator_absent
+ </property>
+ </properties>
+ </entity>
+ </entities>
+
+ <entities type="UMLSEntities" color="">
+ <entity type="Anatomical_site" color="BD0B32" hotkey="a">
+ <properties>
+ <!-- Anything of type "entity" has a span, no need to consider it a property -->
+ <property input="list" type="negation_indicator" maxLink="1" instanceOf="negation_indicator_class"
+ required="true"/>
+ <property input="text" type="associatedCode"></property>
+ <!-- All relations or pointers to entities have input="list" -->
+ <property input="list" type="conditional" maxLink="1" instanceOf="conditional_class"
+ required="true"/>
+ <property input="list" type="generic" maxLink="1" instanceOf="generic_class" required="true"/>
+ <property input="list" type="subject" maxLink="1" instanceOf="Person"/>
+ <property input="list" type="uncertainty_indicator" maxLink="1"
+ instanceOf="uncertainty_indicator_class" required="true"/>
+ </properties>
+ </entity>
+ <entity type="Disease_Disorder" color="AB0BBD" hotkey="d">
+ <properties>
+ <!-- Again, any relations or pointers to other annotations have input="list"-->
+ <property input="list" type="negation_indicator" maxLink="1" instanceOf="negation_indicator_class"
+ required="true"/>
+ <property input="text" type="associatedCode"></property>
+ <property input="list" type="conditional" maxLink="1" instanceOf="conditional_class"
+ required="true"/>
+ <property input="list" type="generic" maxLink="1" instanceOf="generic_class" required="true"/>
+ <property input="list" type="subject" maxLink="1" instanceOf="Person"/>
+ <property input="list" type="uncertainty_indicator" maxLink="1"
+ instanceOf="uncertainty_indicator_class" required="true"/>
+ <!-- Commas in the "instanceof" field allow you to specify that it can be an instance of many things -->
+ <!-- Many is specified using an absurdly high number -->
+ <property input="text" type="alleviating_factor"></property>
+ <property input="text" type="associated_sign_or_symptom"></property>
+ <!-- input="multichoice" is used when you've got a choice where more than one item can be chosen-->
+ <property input="text" type="course"></property>
+ <property input="text" type="exacerbating_factor"></property>
+ <property input="text" type="duration"></property>
+ <property input="text" type="start_time"></property>
+ <property input="text" type="end_time"></property>
+ <property input="list" type="historyOf" maxLink="1" instanceOf="historyOf_indicator_class"
+ required="true"/>
+ <property input="text" type="relative_temporal_context"></property>
+ <property input="list" type="severity" maxLink="1" instanceOf="severity_class" required="true"/>
+ </properties>
+ </entity>
+
+ <entity type="Clinical_Attribute" color="580BBD" hotkey="k">
+ <properties>
+ <property input="list" type="negation_indicator" maxLink="1" instanceOf="negation_indicator_class"
+ required="true"/>
+ <property input="text" type="associatedCode"></property>
+ <property input="list" type="conditional" maxLink="1" instanceOf="conditional_class"
+ required="true"/>
+ <property input="list" type="generic" maxLink="1" instanceOf="generic_class" required="true"/>
+ <property input="list" type="subject" maxLink="1" instanceOf="Person"/>
+ <property input="list" type="entity" maxLink="1"
+ instanceOf="Procedure,Anatomical_site,Disease_Disorder"/>
+ <property input="list" type="uncertainty_indicator" maxLink="1"
+ instanceOf="uncertainty_indicator_class" required="true"/>
+ <property input="list" type="historyOf" maxLink="1" instanceOf="historyOf_indicator_class"
+ required="true"/>
+ </properties>
+ </entity>
+
+ <entity type="Devices" color="140BBD">
+ <properties>
+ <property input="list" type="negation_indicator" maxLink="1" instanceOf="negation_indicator_class"
+ required="true"/>
+ <!-- For manual entry, specify input ="text" -->
+ <property input="text" type="associatedCode"></property>
+ <property input="list" type="conditional" maxLink="1" instanceOf="conditional_class"
+ required="true"/>
+ <property input="list" type="generic" maxLink="1" instanceOf="generic_class" required="true"/>
+ <property input="list" type="subject" maxLink="1" instanceOf="Person"/>
+ <property input="list" type="uncertainty_indicator" maxLink="1"
+ instanceOf="uncertainty_indicator_class" required="true"/>
+ <property input="list" type="historyOf" maxLink="1" instanceOf="historyOf_indicator_class"
+ required="true"/>
+ </properties>
+ </entity>
+ <entity type="Lab" color="D6B189" hotkey="b">
+ <properties>
+ <property input="list" type="negation_indicator" maxLink="1" instanceOf="negation_indicator_class"
+ required="true"/>
+ <property input="text" type="associatedCode"/>
+ <property input="list" type="conditional" maxLink="1" instanceOf="conditional_class"
+ required="true"/>
+ <property input="list" type="generic" maxLink="1" instanceOf="generic_class" required="true"/>
+ <property input="text" type="Lab_value"></property>
+ <property input="list" type="uncertainty_indicator" maxLink="1"
+ instanceOf="uncertainty_indicator_class" required="true"/>
+ <property input="list" type="historyOf" maxLink="1" instanceOf="historyOf_indicator_class"
+ required="true"/>
+ <property input="list" type="subject" maxLink="1" instanceOf="Person"/>
+ <property input="text" type="reference_range"/>
+
+ </properties>
+ </entity>
+ <entity type="Medications/Drugs" color="0B58BD" hotkey="m">
+ <properties>
+ <property input="list" type="negation_indicator" maxLink="1" instanceOf="negation_indicator_class"
+ required="true"/>
+ <property input="text" type="associatedCode"/>
+ <property input="list" type="conditional" maxLink="1" instanceOf="conditional_class"
+ required="true"/>
+ <property input="list" type="generic" maxLink="1" instanceOf="generic_class" required="true"/>
+ <property input="list" type="subject" maxLink="1" instanceOf="Person"/>
+ <property input="list" type="uncertainty_indicator" maxLink="1"
+ instanceOf="uncertainty_indicator_class" required="true"/>
+ <property input="list" type="historyOf" maxLink="1" instanceOf="historyOf_indicator_class"
+ required="true"/>
+ <property input="list" type="allergy_indicator" maxLink="1" instanceOf="allergy_indicator_class"/>
+ <property input="list" type="change_status_model" maxLink="1" instanceOf="StatusChange"/>
+ <property input="list" type="dosage_model" maxLink="1" instanceOf="Dosage"/>
+ <property input="list" type="duration_model" maxLink="1" instanceOf="Duration"/>
+ <property input="list" type="end_date" maxLink="1" instanceOf="Date"/>
+ <property input="list" type="form_model" maxLink="1" instanceOf="Form"/>
+ <property input="text" type="frequency_model"></property>
+ <property input="list" type="route_model" maxLink="1" instanceOf="Route"/>
+ <property input="list" type="start_date" maxLink="1" instanceOf="Date"/>
+ <property input="text" type="strength_model"></property>
+ </properties>
+ </entity>
+ <entity type="Person" color="0B9CBD" hotkey="r">
+ <properties>
+ <property input="choice" type="subject_normalization">patient, family_member, donor_family_member,
+ donor_other, other
+ </property>
+ </properties>
+ </entity>
+ <entity type="Phenomena" color="0BBD8A" hotkey="f">
+ <properties>
+ <property input="list" type="negation_indicator" maxLink="1" instanceOf="negation_indicator_class"
+ required="true"/>
+ <!-- For manual entry, specify input ="text" -->
+ <property input="text" type="associatedCode"></property>
+ <property input="list" type="conditional" maxLink="1" instanceOf="conditional_class"
+ required="true"/>
+ <property input="list" type="generic" maxLink="1" instanceOf="generic_class" required="true"/>
+ <property input="list" type="subject" maxLink="1" instanceOf="Person"/>
+ <property input="list" type="uncertainty_indicator" maxLink="1"
+ instanceOf="uncertainty_indicator_class" required="true"/>
+ <property input="list" type="historyOf" maxLink="1" instanceOf="historyOf_indicator_class"
+ required="true"/>
+ </properties>
+ </entity>
+ <entity type="Procedure" color="0BBD0B" hotkey="p">
+ <properties>
+ <property input="list" type="negation_indicator" maxLink="1" instanceOf="negation_indicator_class"
+ required="true"/>
+ <!-- For manual entry, specify input ="text" -->
+ <property input="text" type="associatedCode"></property>
+ <property input="list" type="conditional" maxLink="1" instanceOf="conditional_class"
+ required="true"/>
+ <property input="list" type="generic" maxLink="1" instanceOf="generic_class" required="true"/>
+ <property input="list" type="subject" maxLink="1" instanceOf="Person"/>
+ <property input="list" type="uncertainty_indicator" maxLink="1"
+ instanceOf="uncertainty_indicator_class" required="true"/>
+ <property input="list" type="historyOf" maxLink="1" instanceOf="historyOf_indicator_class"
+ required="true"/>
+ <property input="text" type="device"></property>
+ <property input="text" type="start_time"></property>
+ <property input="text" type="duration"></property>
+ <property input="text" type="end_time"></property>
+ <property input="text" type="relative_temporal_context"></property>
+ </properties>
+ </entity>
+ <entity type="Sign_symptom" color="BDA50B" hotkey="s">
+ <properties>
+ <property input="text" type="alleviating_factor"></property>
+ <property input="text" type="start_time"></property>
+ <property input="text" type="duration"></property>
+ <property input="text" type="end_time"></property>
+ <property input="list" type="negation_indicator" maxLink="1" instanceOf="negation_indicator_class"
+ required="true"/>
+ <!-- For manual entry, specify input ="text" -->
+ <property input="text" type="associatedCode"></property>
+ <property input="list" type="conditional" maxLink="1" instanceOf="conditional_class"
+ required="true"/>
+ <property input="list" type="generic" maxLink="1" instanceOf="generic_class" required="true"/>
+ <property input="list" type="subject" maxLink="1" instanceOf="Person"/>
+ <property input="list" type="uncertainty_indicator" maxLink="1"
+ instanceOf="uncertainty_indicator_class" required="true"/>
+ <property input="list" type="historyOf" maxLink="1" instanceOf="historyOf_indicator_class"
+ required="true"/>
+ <property input="text" type="exacerbating_factor"></property>
+ <property input="text" type="course"></property>
+ <property input="text" type="body_location"></property>
+ <property input="text" type="severity"></property>
+ <property input="text" type="relative_temporal_context"></property>
+ </properties>
+ </entity>
+ </entities>
+
+ </definition>
+</schema>