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Posted to commits@airavata.apache.org by di...@apache.org on 2018/04/23 20:21:31 UTC
[airavata] 01/01: Merge branch 'develop' into staging
This is an automated email from the ASF dual-hosted git repository.
dimuthuupe pushed a commit to branch staging
in repository https://gitbox.apache.org/repos/asf/airavata.git
commit 58678923e9754ea8839dfdcce113b831c09a66c7
Merge: cc699a4 42bd72f
Author: dimuthu <di...@gmail.com>
AuthorDate: Mon Apr 23 16:19:08 2018 -0400
Merge branch 'develop' into staging
.../api/server/handler/AiravataServerHandler.java | 3 +-
modules/airavata-helix/agent-api/pom.xml | 12 +-
.../apache/airavata/agents/api/AgentAdaptor.java | 2 +
.../org/apache/airavata/agents/api/AgentStore.java | 122 --------
.../org/apache/airavata/agents/api/AgentUtils.java | 34 ++
modules/airavata-helix/agent-impl/pom.xml | 1 +
.../airavata-helix/agent-impl/ssh-agent/pom.xml | 25 +-
.../helix/agent/local/LocalAgentAdaptor.java | 69 -----
.../airavata/helix/agent/ssh/SshAgentAdaptor.java | 109 ++++---
.../agent/storage/StorageResourceAdaptorImpl.java | 67 +---
.../agent-impl/{ => sshj-agent}/pom.xml | 24 +-
.../airavata/helix/adaptor/PoolingSSHJClient.java | 345 +++++++++++++++++++++
.../airavata/helix/adaptor/SSHJAgentAdaptor.java | 217 +++++++++++++
.../airavata/helix/adaptor/SSHJStorageAdaptor.java | 73 +++++
.../adaptor/wrapper/SCPFileTransferWrapper.java | 76 +++++
.../helix/adaptor/wrapper/SFTPClientWrapper.java} | 29 +-
.../helix/adaptor/wrapper/SessionWrapper.java | 183 +++++++++++
.../controller/conf/airavata-server.properties | 2 +-
.../participant/conf/airavata-server.properties | 136 +-------
.../post-wm/conf/airavata-server.properties | 93 +-----
.../pre-wm/conf/airavata-server.properties | 115 +------
modules/airavata-helix/helix-spectator/pom.xml | 8 +-
.../airavata/helix/impl/task/AiravataTask.java | 150 ++++-----
.../airavata/helix/impl/task/TaskContext.java | 205 ++++--------
.../impl/task/cancel/CancelCompletingTask.java | 14 +-
.../task/cancel/RemoteJobCancellationTask.java | 65 +++-
.../airavata/helix/impl/task/env/EnvSetupTask.java | 2 +-
.../helix/impl/task/staging/ArchiveTask.java | 7 +-
.../helix/impl/task/staging/DataStagingTask.java | 40 ++-
.../impl/task/staging/InputDataStagingTask.java | 10 +
.../impl/task/staging/OutputDataStagingTask.java | 37 ++-
.../task/submission/DefaultJobSubmissionTask.java | 75 +++--
.../task/submission/ForkJobSubmissionTask.java | 2 +-
.../impl/task/submission/JobSubmissionTask.java | 50 +--
.../task/submission/config/GroovyMapBuilder.java | 9 +-
.../impl/task/submission/config/JobFactory.java | 19 +-
.../helix/impl/workflow/PostWorkflowManager.java | 245 ++++++---------
.../helix/impl/workflow/PreWorkflowManager.java | 126 +++-----
.../helix/impl/workflow/WorkflowManager.java | 124 ++++++++
.../src/main/resources/airavata-server.properties | 217 +------------
.../helix-spectator/src/main/resources/logback.xml | 4 +-
modules/airavata-helix/task-api/pom.xml | 12 +-
.../helix/task/api/support/AdaptorSupport.java | 6 +-
modules/airavata-helix/task-core/pom.xml | 17 +-
.../helix/core/support/AdaptorSupportImpl.java | 65 ----
.../helix/core/support/TaskHelperImpl.java | 2 +-
.../core/support/adaptor/AdaptorSupportImpl.java | 106 +++++++
.../helix/core/support/adaptor/AgentStore.java | 83 +++++
.../airavata/helix/core/util/MonitoringUtil.java | 158 ++++++++++
.../apache/airavata/helix/core/util/TaskUtil.java | 4 +
...{WorkflowManager.java => WorkflowOperator.java} | 6 +-
.../airavata/common/utils}/ThriftClientPool.java | 2 +-
.../airavata/monitor/email/EmailBasedMonitor.java | 3 +-
.../messaging/core/impl/RabbitMQPublisher.java | 31 +-
pom.xml | 2 +-
55 files changed, 2109 insertions(+), 1534 deletions(-)
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