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Posted to dev@ctakes.apache.org by Pei Chen <ch...@apache.org> on 2015/06/19 17:32:32 UTC
Apache cTAKES hosted demos and examples
There seems to be a significant interest in having a hosted demo and
examples, so I started this index page along with initial code examples:
Index page:
http://healthnlp.github.io/examples/
Live demo:
http://52.24.118.198:8080/index.jsp
--Pei
Re: Apache cTAKES hosted demos and examples
Posted by ta...@kp.org.
This is excellent :)
Regards,
Taposh D. Roy | Health Data Project Lead/Scientist | Delivery System
Analytics, Decision Support | Kaiser Permanente | cell: 510.206.1633 |
taposh.d.roy@kp.org
NOTICE TO RECIPIENT: If you are not the intended recipient of this
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please notify the sender immediately by reply e-mail and permanently
delete this e-mail and any attachments without reading, forwarding or
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From: andy mcmurry <mc...@gmail.com>
To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
Date: 06/19/2015 10:39 AM
Subject: Re: Apache cTAKES hosted demos and examples
Pei: this is wonderful! Thanks for doing this!
On Fri, Jun 19, 2015 at 8:32 AM, Pei Chen <ch...@apache.org> wrote:
> There seems to be a significant interest in having a hosted demo and
> examples, so I started this index page along with initial code examples:
>
> Index page:
> http://healthnlp.github.io/examples/
>
> Live demo:
> http://52.24.118.198:8080/index.jsp
>
> --Pei
>
Re: Apache cTAKES hosted demos and examples
Posted by ta...@kp.org.
This is excellent :)
Regards,
Taposh D. Roy | Health Data Project Lead/Scientist | Delivery System
Analytics, Decision Support | Kaiser Permanente | cell: 510.206.1633 |
taposh.d.roy@kp.org
NOTICE TO RECIPIENT: If you are not the intended recipient of this
e-mail, you are prohibited from sharing, copying, or otherwise using or
disclosing its contents. If you have received this e-mail in error,
please notify the sender immediately by reply e-mail and permanently
delete this e-mail and any attachments without reading, forwarding or
saving them. Thank you.
From: andy mcmurry <mc...@gmail.com>
To: "dev@ctakes.apache.org" <de...@ctakes.apache.org>
Cc: "user@ctakes.apache.org" <us...@ctakes.apache.org>
Date: 06/19/2015 10:39 AM
Subject: Re: Apache cTAKES hosted demos and examples
Pei: this is wonderful! Thanks for doing this!
On Fri, Jun 19, 2015 at 8:32 AM, Pei Chen <ch...@apache.org> wrote:
> There seems to be a significant interest in having a hosted demo and
> examples, so I started this index page along with initial code examples:
>
> Index page:
> http://healthnlp.github.io/examples/
>
> Live demo:
> http://52.24.118.198:8080/index.jsp
>
> --Pei
>
Re: Apache cTAKES hosted demos and examples
Posted by andy mcmurry <mc...@gmail.com>.
Pei: this is wonderful! Thanks for doing this!
On Fri, Jun 19, 2015 at 8:32 AM, Pei Chen <ch...@apache.org> wrote:
> There seems to be a significant interest in having a hosted demo and
> examples, so I started this index page along with initial code examples:
>
> Index page:
> http://healthnlp.github.io/examples/
>
> Live demo:
> http://52.24.118.198:8080/index.jsp
>
> --Pei
>
Re: Apache cTAKES hosted demos and examples
Posted by andy mcmurry <mc...@gmail.com>.
Pei: this is wonderful! Thanks for doing this!
On Fri, Jun 19, 2015 at 8:32 AM, Pei Chen <ch...@apache.org> wrote:
> There seems to be a significant interest in having a hosted demo and
> examples, so I started this index page along with initial code examples:
>
> Index page:
> http://healthnlp.github.io/examples/
>
> Live demo:
> http://52.24.118.198:8080/index.jsp
>
> --Pei
>
Re: Apache cTAKES hosted demos and examples
Posted by Sangram Patil <sa...@figmd.com>.
Hi Pei,
That's awesome creation... I have few concerns and questions after the
parsing clinical note thru' ctakes-temporal (below is the part of result).
Could you please help me to resolve my doubts-
In below screenshot
[image: Inline image 1]
1. "androgen deprivation" is therapy but not classified as Procedure,
2. Active Surveillance (sometimes mentioned as watchful waiting), means
patient is under observation, that may not be classified "drug" for
"Active".
3. "External Beam Radiation" should also covered under procedure whereas
just "Radiation" covers under procedure.
Lastly,I need to find if a particulate treatment is happened or not. Could
you please suggest the way to determine if the treatment is done for the
patient or it is just mentioned/discussed.
ClinicalNote is attached for your reference.
On Mon, Jun 22, 2015 at 8:05 PM, Finan, Sean <
Sean.Finan@childrens.harvard.edu> wrote:
> Very cool. It allows quick reproducible testing. For example:
>
> <cas:Sofa xmi:id="1" sofaNum="1" sofaID="_InitialView" mimeType="text"
> sofaString="The patient has GBM and that sucks."/>
>
> <textsem:DiseaseDisorderMention xmi:id="193" sofa="1" begin="16" end="19"
> id="0" ontologyConceptArr="145 125 135 155 175 165" typeID="2"
> discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0"
> conditional="false" generic="false" historyOf="0"/>
>
> <refsem:UmlsConcept xmi:id="165" codingScheme="SNOMEDCT" code="189917003"
> score="0.0" disambiguated="false" cui="C0017636" tui="T191"
> preferredText="Glioblastoma"/>
> <refsem:UmlsConcept xmi:id="175" codingScheme="SNOMEDCT" code="269506004"
> score="0.0" disambiguated="false" cui="C0017636" tui="T191"
> preferredText="Glioblastoma"/>
> <refsem:UmlsConcept xmi:id="155" codingScheme="SNOMEDCT" code="63634009"
> score="0.0" disambiguated="false" cui="C0017636" tui="T191"
> preferredText="Glioblastoma"/>
> <refsem:UmlsConcept xmi:id="135" codingScheme="SNOMEDCT" code="393563007"
> score="0.0" disambiguated="false" cui="C1621958" tui="T191"
> preferredText="Glioblastoma Multiforme"/>
> <refsem:UmlsConcept xmi:id="125" codingScheme="SNOMEDCT" code="63634009"
> score="0.0" disambiguated="false" cui="C1621958" tui="T191"
> preferredText="Glioblastoma Multiforme"/>
> <refsem:UmlsConcept xmi:id="145" codingScheme="SNOMEDCT" code="189917003"
> score="0.0" disambiguated="false" cui="C1621958" tui="T191"
> preferredText="Glioblastoma Multiforme"/>
>
> This is extremely useful!
>
> -----Original Message-----
> From: Pei Chen [mailto:chenpei@apache.org]
> Sent: Friday, June 19, 2015 11:33 AM
> To: dev@ctakes.apache.org; user@ctakes.apache.org
> Subject: Apache cTAKES hosted demos and examples
>
> There seems to be a significant interest in having a hosted demo and
> examples, so I started this index page along with initial code examples:
>
> Index page:
>
> https://urldefense.proofpoint.com/v2/url?u=http-3A__healthnlp.github.io_examples_&d=BQIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=Qiv3CPnn_kSAs-guC8v9Zd6RuvSU5TftExH8bS5kN5A&s=QIjhvps1xpM3shTSmpKSWNdpp51hhrdvZTEFxtxjLE0&e=
>
> Live demo:
>
> https://urldefense.proofpoint.com/v2/url?u=http-3A__52.24.118.198-3A8080_index.jsp&d=BQIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=Qiv3CPnn_kSAs-guC8v9Zd6RuvSU5TftExH8bS5kN5A&s=WccVDuNaCd-0oHrPBxznasYuMRxkZP_0HHmFlhOR0dY&e=
>
> --Pei
>
--
** Please include your practice ID in your correspondence.*
Sincerely,
Sangram Patil
Team Lead-Core Dev
Cell: +91 992 293 9497
figmd.com <http://www.figmd.com/>
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RE: Apache cTAKES hosted demos and examples
Posted by "Finan, Sean" <Se...@childrens.harvard.edu>.
Very cool. It allows quick reproducible testing. For example:
<cas:Sofa xmi:id="1" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="The patient has GBM and that sucks."/>
<textsem:DiseaseDisorderMention xmi:id="193" sofa="1" begin="16" end="19" id="0" ontologyConceptArr="145 125 135 155 175 165" typeID="2" discoveryTechnique="1" confidence="0.0" polarity="0" uncertainty="0" conditional="false" generic="false" historyOf="0"/>
<refsem:UmlsConcept xmi:id="165" codingScheme="SNOMEDCT" code="189917003" score="0.0" disambiguated="false" cui="C0017636" tui="T191" preferredText="Glioblastoma"/>
<refsem:UmlsConcept xmi:id="175" codingScheme="SNOMEDCT" code="269506004" score="0.0" disambiguated="false" cui="C0017636" tui="T191" preferredText="Glioblastoma"/>
<refsem:UmlsConcept xmi:id="155" codingScheme="SNOMEDCT" code="63634009" score="0.0" disambiguated="false" cui="C0017636" tui="T191" preferredText="Glioblastoma"/>
<refsem:UmlsConcept xmi:id="135" codingScheme="SNOMEDCT" code="393563007" score="0.0" disambiguated="false" cui="C1621958" tui="T191" preferredText="Glioblastoma Multiforme"/>
<refsem:UmlsConcept xmi:id="125" codingScheme="SNOMEDCT" code="63634009" score="0.0" disambiguated="false" cui="C1621958" tui="T191" preferredText="Glioblastoma Multiforme"/>
<refsem:UmlsConcept xmi:id="145" codingScheme="SNOMEDCT" code="189917003" score="0.0" disambiguated="false" cui="C1621958" tui="T191" preferredText="Glioblastoma Multiforme"/>
This is extremely useful!
-----Original Message-----
From: Pei Chen [mailto:chenpei@apache.org]
Sent: Friday, June 19, 2015 11:33 AM
To: dev@ctakes.apache.org; user@ctakes.apache.org
Subject: Apache cTAKES hosted demos and examples
There seems to be a significant interest in having a hosted demo and examples, so I started this index page along with initial code examples:
Index page:
https://urldefense.proofpoint.com/v2/url?u=http-3A__healthnlp.github.io_examples_&d=BQIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=Qiv3CPnn_kSAs-guC8v9Zd6RuvSU5TftExH8bS5kN5A&s=QIjhvps1xpM3shTSmpKSWNdpp51hhrdvZTEFxtxjLE0&e=
Live demo:
https://urldefense.proofpoint.com/v2/url?u=http-3A__52.24.118.198-3A8080_index.jsp&d=BQIBaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=Qiv3CPnn_kSAs-guC8v9Zd6RuvSU5TftExH8bS5kN5A&s=WccVDuNaCd-0oHrPBxznasYuMRxkZP_0HHmFlhOR0dY&e=
--Pei