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Posted to builds@beam.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2020/01/02 18:29:01 UTC
Build failed in Jenkins: beam_PostCommit_Python_MongoDBIO_IT #1689
See <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/1689/display/redirect?page=changes>
Changes:
[sunjincheng121] [BEAM-8935] Fail fast if sdk harness startup failed.
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[...truncated 25.57 KB...]
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
root: Generating grammar tables from /usr/lib/python2.7/lib2to3/PatternGrammar.txt
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_artifact_api_pb2.py>
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_artifact_api_pb2_grpc.py>
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_expansion_api_pb2.py>
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_expansion_api_pb2_grpc.py>
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_fn_api_pb2.py>
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_fn_api_pb2_grpc.py>
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_interactive_api_pb2.py>
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_job_api_pb2.py>
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_job_api_pb2_grpc.py>
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_provision_api_pb2.py>
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_provision_api_pb2_grpc.py>
RefactoringTool: No changes to <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2.py>
RefactoringTool: Can't open <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2_grpc.py>: [Errno 2] No such file or directory: '<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2_grpc.py'>
RefactoringTool: No changes to <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/endpoints_pb2.py>
RefactoringTool: No changes to <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/external_transforms_pb2.py>
RefactoringTool: No changes to <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/metrics_pb2.py>
RefactoringTool: No changes to <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/schema_pb2.py>
RefactoringTool: Refactored <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/standard_window_fns_pb2.py>
RefactoringTool: Files that were modified:
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_artifact_api_pb2.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_artifact_api_pb2_grpc.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_expansion_api_pb2.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_expansion_api_pb2_grpc.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_fn_api_pb2.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_fn_api_pb2_grpc.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_interactive_api_pb2.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_job_api_pb2.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_job_api_pb2_grpc.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_provision_api_pb2.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_provision_api_pb2_grpc.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2_grpc.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/endpoints_pb2.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/external_transforms_pb2.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/metrics_pb2.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/schema_pb2.py>
RefactoringTool: <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/standard_window_fns_pb2.py>
RefactoringTool: There was 1 error:
RefactoringTool: Can't open <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2_grpc.py>: [Errno 2] No such file or directory: '<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/portability/api/beam_runner_api_pb2_grpc.py'>
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/setup.py",> line 300, in <module>
'mypy': generate_protos_first(mypy),
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/45127155/local/lib/python2.7/site-packages/setuptools/__init__.py",> line 145, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/setup.py",> line 224, in run
gen_protos.generate_proto_files(log=log)
File "gen_protos.py", line 152, in generate_proto_files
'Error applying futurize to generated protobuf python files.')
RuntimeError: Error applying futurize to generated protobuf python files.
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
> Task :sdks:python:test-suites:direct:py35:mongodbioIT
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Processing /home/jenkins/.cache/pip/wheels/59/b1/91/f02e76c732915c4015ab4010f3015469866c1eb9b14058d8e7/dill-0.3.1.1-cp35-none-any.whl
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Requirement already satisfied: zipp>=0.5 in <https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/build/gradleenv/1398941889/lib/python3.5/site-packages> (from importlib-metadata>=0.12; python_version < "3.8"->pytest<5.0,>=4.4.0->apache-beam==2.19.0.dev0) (0.6.0)
Collecting apipkg>=1.4
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Installing collected packages: crcmod, dill, fastavro, docopt, urllib3, idna, certifi, chardet, requests, hdfs, httplib2, pbr, mock, numpy, pymongo, pyasn1, pyasn1-modules, rsa, oauth2client, pyparsing, pydot, python-dateutil, pytz, typing, typing-extensions, avro-python3, pyarrow, nose, nose-xunitmp, pandas, parameterized, pyhamcrest, pyyaml, requests-mock, tenacity, packaging, wcwidth, pathlib2, attrs, atomicwrites, pytest, apipkg, execnet, pytest-forked, pytest-xdist, apache-beam
Running setup.py develop for apache-beam
Successfully installed apache-beam apipkg-1.5 atomicwrites-1.3.0 attrs-19.3.0 avro-python3-1.9.1 certifi-2019.11.28 chardet-3.0.4 crcmod-1.7 dill-0.3.1.1 docopt-0.6.2 execnet-1.7.1 fastavro-0.21.24 hdfs-2.5.8 httplib2-0.12.0 idna-2.8 mock-2.0.0 nose-1.3.7 nose-xunitmp-0.4.1 numpy-1.18.0 oauth2client-3.0.0 packaging-19.2 pandas-0.24.2 parameterized-0.7.1 pathlib2-2.3.5 pbr-5.4.4 pyarrow-0.15.1 pyasn1-0.4.8 pyasn1-modules-0.2.7 pydot-1.4.1 pyhamcrest-1.9.0 pymongo-3.10.0 pyparsing-2.4.6 pytest-4.6.8 pytest-forked-1.1.3 pytest-xdist-1.31.0 python-dateutil-2.8.1 pytz-2019.3 pyyaml-5.2 requests-2.22.0 requests-mock-1.7.0 rsa-4.0 tenacity-5.1.5 typing-3.7.4.1 typing-extensions-3.7.4.1 urllib3-1.25.7 wcwidth-0.1.8
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:__main__:Writing 100000 documents to mongodb
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:79: FutureWarning: WriteToMongoDB is experimental.
known_args.batch_size))
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function annotate_downstream_side_inputs at 0x7f8e87df30d0> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function fix_side_input_pcoll_coders at 0x7f8e87df31e0> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function lift_combiners at 0x7f8e87df3268> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function expand_sdf at 0x7f8e87df32f0> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function expand_gbk at 0x7f8e87df3378> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function sink_flattens at 0x7f8e87df3488> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function greedily_fuse at 0x7f8e87df3510> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function read_to_impulse at 0x7f8e87df3598> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function impulse_to_input at 0x7f8e87df3620> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function inject_timer_pcollections at 0x7f8e87df37b8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function sort_stages at 0x7f8e87df3840> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function window_pcollection_coders at 0x7f8e87df38c8> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner:Created Worker handler <apache_beam.runners.portability.fn_api_runner.EmbeddedWorkerHandler object at 0x7f8e8a5c8d68> for environment urn: "beam:env:embedded_python:v1"
INFO:apache_beam.runners.portability.fn_api_runner:Running ((ref_AppliedPTransform_Create/Impulse_3)+(ref_AppliedPTransform_Create/FlatMap(<lambda at core.py:2591>)_4))+(((ref_AppliedPTransform_Create/Map(decode)_6)+(ref_AppliedPTransform_Create documents_7))+((((ref_AppliedPTransform_WriteToMongoDB/ParDo(_GenerateObjectIdFn)_9)+(ref_AppliedPTransform_WriteToMongoDB/Reshuffle/AddRandomKeys_11))+(ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/Map(reify_timestamps)_13))+(WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Write)))
INFO:apache_beam.runners.portability.fn_api_runner:Running ((WriteToMongoDB/Reshuffle/ReshufflePerKey/GroupByKey/Read)+((ref_AppliedPTransform_WriteToMongoDB/Reshuffle/ReshufflePerKey/FlatMap(restore_timestamps)_18)+(ref_AppliedPTransform_WriteToMongoDB/Reshuffle/RemoveRandomKeys_19)))+(ref_AppliedPTransform_WriteToMongoDB/ParDo(_WriteMongoFn)_20)
INFO:__main__:Writing 100000 documents to mongodb finished in 32.184 seconds
INFO:root:Missing pipeline option (runner). Executing pipeline using the default runner: DirectRunner.
INFO:__main__:Reading from mongodb beam_mongodbio_it_db:integration_test_1577989700
<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/apache_beam/io/mongodbio_it_test.py>:94: FutureWarning: ReadFromMongoDB is experimental.
| 'Combine' >> beam.CombineGlobally(sum))
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function annotate_downstream_side_inputs at 0x7f8e87df30d0> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function fix_side_input_pcoll_coders at 0x7f8e87df31e0> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function lift_combiners at 0x7f8e87df3268> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function expand_sdf at 0x7f8e87df32f0> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function expand_gbk at 0x7f8e87df3378> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function sink_flattens at 0x7f8e87df3488> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function greedily_fuse at 0x7f8e87df3510> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function read_to_impulse at 0x7f8e87df3598> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function impulse_to_input at 0x7f8e87df3620> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function inject_timer_pcollections at 0x7f8e87df37b8> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function sort_stages at 0x7f8e87df3840> ====================
INFO:apache_beam.runners.portability.fn_api_runner_transforms:==================== <function window_pcollection_coders at 0x7f8e87df38c8> ====================
INFO:apache_beam.runners.worker.statecache:Creating state cache with size 100
INFO:apache_beam.runners.portability.fn_api_runner:Created Worker handler <apache_beam.runners.portability.fn_api_runner.EmbeddedWorkerHandler object at 0x7f8e68f5a6a0> for environment urn: "beam:env:embedded_python:v1"
INFO:apache_beam.runners.portability.fn_api_runner:Running (ref_AppliedPTransform_ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/Impulse_5)+(((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/PairWithRestriction)+(ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/SplitAndSizeRestriction))+(ref_PCollection_PCollection_1_split/Write))
INFO:apache_beam.runners.portability.fn_api_runner:Running (ref_PCollection_PCollection_1_split/Read)+(((ReadFromMongoDB/Read/_SDFBoundedSourceWrapper/ParDo(SDFBoundedSourceDoFn)/Process)+((ref_AppliedPTransform_Map_7)+((ref_AppliedPTransform_Combine/KeyWithVoid_9)+(Combine/CombinePerKey/Precombine))))+(Combine/CombinePerKey/Group/Write))
INFO:apache_beam.runners.portability.fn_api_runner:Running (Combine/CombinePerKey/Group/Read)+((Combine/CombinePerKey/Merge)+((Combine/CombinePerKey/ExtractOutputs)+((ref_AppliedPTransform_Combine/UnKey_17)+(ref_PCollection_PCollection_9/Write))))
INFO:apache_beam.runners.portability.fn_api_runner:Running (((ref_AppliedPTransform_Combine/DoOnce/Impulse_19)+(((ref_AppliedPTransform_Combine/DoOnce/FlatMap(<lambda at core.py:2591>)_20)+((ref_AppliedPTransform_Combine/DoOnce/Map(decode)_22)+(ref_AppliedPTransform_Combine/InjectDefault_23)))+(ref_AppliedPTransform_assert_that/WindowInto(WindowIntoFn)_30)))+(ref_AppliedPTransform_assert_that/ToVoidKey_31))+((ref_AppliedPTransform_assert_that/Group/pair_with_1_34)+((assert_that/Group/Flatten/Transcode/1)+(assert_that/Group/Flatten/Write/1)))
INFO:apache_beam.runners.portability.fn_api_runner:Running ((ref_AppliedPTransform_assert_that/Create/Impulse_26)+((ref_AppliedPTransform_assert_that/Create/FlatMap(<lambda at core.py:2591>)_27)+(ref_AppliedPTransform_assert_that/Create/Map(decode)_29)))+((ref_AppliedPTransform_assert_that/Group/pair_with_0_33)+((assert_that/Group/Flatten/Transcode/0)+(assert_that/Group/Flatten/Write/0)))
INFO:apache_beam.runners.portability.fn_api_runner:Running (assert_that/Group/Flatten/Read)+(assert_that/Group/GroupByKey/Write)
INFO:apache_beam.runners.portability.fn_api_runner:Running ((assert_that/Group/GroupByKey/Read)+((ref_AppliedPTransform_assert_that/Group/Map(_merge_tagged_vals_under_key)_40)+(ref_AppliedPTransform_assert_that/Unkey_41)))+(ref_AppliedPTransform_assert_that/Match_42)
INFO:__main__:Read 100000 documents from mongodb finished in 4.259 seconds
mongoioit27639
mongoioit27639
FAILURE: Build failed with an exception.
* Where:
Build file '<https://builds.apache.org/job/beam_PostCommit_Python_MongoDBIO_IT/ws/src/sdks/python/test-suites/direct/py2/build.gradle'> line: 109
* What went wrong:
Execution failed for task ':sdks:python:test-suites:direct:py2:mongodbioIT'.
> Process 'command 'sh'' finished with non-zero exit value 1
* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output. Run with --scan to get full insights.
* Get more help at https://help.gradle.org
Deprecated Gradle features were used in this build, making it incompatible with Gradle 6.0.
Use '--warning-mode all' to show the individual deprecation warnings.
See https://docs.gradle.org/5.2.1/userguide/command_line_interface.html#sec:command_line_warnings
BUILD FAILED in 1m 45s
4 actionable tasks: 4 executed
Publishing build scan...
https://gradle.com/s/us3mggtf5uw2u
Build step 'Invoke Gradle script' changed build result to FAILURE
Build step 'Invoke Gradle script' marked build as failure
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