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Posted to issues@arrow.apache.org by "Hei (Jira)" <ji...@apache.org> on 2020/04/24 12:23:00 UTC
[jira] [Updated] (ARROW-8586) Failed to Install arrow From CRAN
[ https://issues.apache.org/jira/browse/ARROW-8586?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Hei updated ARROW-8586:
-----------------------
Description:
Hi,
I am trying to install arrow via RStudio, but it seems like it is not working that after I installed the package, it kept asking me to run arrow::install_arrow() even after I did:
{code}
> install.packages("arrow")
Installing package into ‘/home/hc/R/x86_64-redhat-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/arrow_0.17.0.tar.gz'
Content type 'application/x-gzip' length 242534 bytes (236 KB)
==================================================
downloaded 236 KB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Successfully retrieved C++ source
*** Building C++ libraries
**** cmake
**** arrow
./configure: line 132: cd: libarrow/arrow-0.17.0/lib: Not a directory
------------------------- NOTE ---------------------------
After installation, please run arrow::install_arrow()
for help installing required runtime libraries
---------------------------------------------------------
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array.cpp -o array.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_from_vector.cpp -o array_from_vector.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_to_vector.cpp -o array_to_vector.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arraydata.cpp -o arraydata.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arrowExports.cpp -o arrowExports.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c buffer.cpp -o buffer.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c chunkedarray.cpp -o chunkedarray.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compression.cpp -o compression.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compute.cpp -o compute.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c csv.cpp -o csv.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c dataset.cpp -o dataset.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c datatype.cpp -o datatype.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c expression.cpp -o expression.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c feather.cpp -o feather.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c field.cpp -o field.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c filesystem.cpp -o filesystem.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c io.cpp -o io.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c json.cpp -o json.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c memorypool.cpp -o memorypool.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c message.cpp -o message.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c parquet.cpp -o parquet.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c py-to-r.cpp -o py-to-r.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatch.cpp -o recordbatch.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchreader.cpp -o recordbatchreader.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchwriter.cpp -o recordbatchwriter.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c schema.cpp -o schema.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c symbols.cpp -o symbols.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c table.cpp -o table.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c threadpool.cpp -o threadpool.o
g++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib -lR
installing to /home/hc/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘arrow’
finding HTML links ... done
ArrayData html
ChunkedArray html
Codec html
CsvReadOptions html
Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/CsvReadOptions.Rd:61: file link ‘read.csv’ in package ‘utils’ does not exist and so has been treated as a topic
CsvTableReader html
DataType html
Dataset html
DictionaryType html
Expression html
FeatherReader html
Field html
FileFormat html
FileInfo html
FileSelector html
FileSystem html
FixedWidthType html
InputStream html
MemoryPool html
Message html
MessageReader html
OutputStream html
ParquetFileReader html
ParquetFileWriter html
ParquetReaderProperties html
ParquetWriterProperties html
Partitioning html
RecordBatch html
RecordBatchReader html
RecordBatchWriter html
Scanner html
Schema html
Table html
array html
arrow-package html
arrow_available html
buffer html
cast_options html
codec_is_available html
compression html
cpu_count html
data-type html
dataset_factory html
default_memory_pool html
dictionary html
enums html
hive_partition html
install_arrow html
install_pyarrow html
make_readable_file html
map_batches html
mmap_create html
mmap_open html
open_dataset html
read_delim_arrow html
read_feather html
read_ipc_stream html
read_json_arrow html
read_message html
read_parquet html
read_record_batch html
read_schema html
reexports html
Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:24: file link ‘print.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:24: file link ‘str.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘contains’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘ends_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘everything’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘last_col’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘matches’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘num_range’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘starts_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
type html
unify_schemas html
write_feather html
write_ipc_stream html
write_parquet html
write_to_raw html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arrow)
The downloaded source packages are in
‘/tmp/Rtmpo9otzy/downloaded_packages’
> library(arrow)
Attaching package: ‘arrow’
The following object is masked from ‘package:utils’:
timestamp
> df <- read_parquet('/home/hc/my.10.level.20200331.2book.parquet')
Error in io___MemoryMappedFile__Open(path, mode) :
Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries.
> arrow::install_arrow()
Installing package into ‘/home/hc/R/x86_64-redhat-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/arrow_0.17.0.tar.gz'
Content type 'application/x-gzip' length 242534 bytes (236 KB)
==================================================
downloaded 236 KB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** No C++ binaries found for centos-7.7.1908
*** Successfully retrieved C++ source
*** Building C++ libraries
**** cmake
**** arrow
./configure: line 132: cd: libarrow/arrow-0.17.0/lib: Not a directory
------------------------- NOTE ---------------------------
After installation, please run arrow::install_arrow()
for help installing required runtime libraries
---------------------------------------------------------
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array.cpp -o array.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_from_vector.cpp -o array_from_vector.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_to_vector.cpp -o array_to_vector.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arraydata.cpp -o arraydata.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arrowExports.cpp -o arrowExports.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c buffer.cpp -o buffer.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c chunkedarray.cpp -o chunkedarray.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compression.cpp -o compression.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compute.cpp -o compute.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c csv.cpp -o csv.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c dataset.cpp -o dataset.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c datatype.cpp -o datatype.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c expression.cpp -o expression.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c feather.cpp -o feather.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c field.cpp -o field.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c filesystem.cpp -o filesystem.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c io.cpp -o io.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c json.cpp -o json.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c memorypool.cpp -o memorypool.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c message.cpp -o message.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c parquet.cpp -o parquet.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c py-to-r.cpp -o py-to-r.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatch.cpp -o recordbatch.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchreader.cpp -o recordbatchreader.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchwriter.cpp -o recordbatchwriter.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c schema.cpp -o schema.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c symbols.cpp -o symbols.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c table.cpp -o table.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c threadpool.cpp -o threadpool.o
g++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib -lR
installing to /home/hc/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘arrow’
finding HTML links ... done
ArrayData html
ChunkedArray html
Codec html
CsvReadOptions html
Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/CsvReadOptions.Rd:61: file link ‘read.csv’ in package ‘utils’ does not exist and so has been treated as a topic
CsvTableReader html
DataType html
Dataset html
DictionaryType html
Expression html
FeatherReader html
Field html
FileFormat html
FileInfo html
FileSelector html
FileSystem html
FixedWidthType html
InputStream html
MemoryPool html
Message html
MessageReader html
OutputStream html
ParquetFileReader html
ParquetFileWriter html
ParquetReaderProperties html
ParquetWriterProperties html
Partitioning html
RecordBatch html
RecordBatchReader html
RecordBatchWriter html
Scanner html
Schema html
Table html
array html
arrow-package html
arrow_available html
buffer html
cast_options html
codec_is_available html
compression html
cpu_count html
data-type html
dataset_factory html
default_memory_pool html
dictionary html
enums html
hive_partition html
install_arrow html
install_pyarrow html
make_readable_file html
map_batches html
mmap_create html
mmap_open html
open_dataset html
read_delim_arrow html
read_feather html
read_ipc_stream html
read_json_arrow html
read_message html
read_parquet html
read_record_batch html
read_schema html
reexports html
Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:24: file link ‘print.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:24: file link ‘str.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘contains’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘ends_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘everything’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘last_col’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘matches’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘num_range’ in package ‘tidyselect’ does not exist and so has been treated as a topic
Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘starts_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
type html
unify_schemas html
write_feather html
write_ipc_stream html
write_parquet html
write_to_raw html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arrow)
The downloaded source packages are in
‘/tmp/Rtmpo9otzy/downloaded_packages’
Please restart R to use the 'arrow' package.
Restarting R session...
> library(arrow)
Attaching package: ‘arrow’
The following object is masked from ‘package:utils’:
timestamp
> read_parquet('/home/hc/my.10.level.20200331.1.book.parquet')
Error in io___MemoryMappedFile__Open(path, mode) :
Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries.
> library(arrow)
> df <- read_parquet('/home/hc/my.10.level.20200331.1.book.parquet')
Error in io___MemoryMappedFile__Open(path, mode) :
Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries.
{code}
was:
Hi,
I am trying to install arrow via RStudio, but it seems like it is not working that after I installed the package, it kept asking me to run arrow::install_arrow() even after I did:
{code}
> install.packages("arrow")Installing package into ‘/home/hc/R/x86_64-redhat-linux-gnu-library/3.6’(as ‘lib’ is unspecified)trying URL 'https://cran.rstudio.com/src/contrib/arrow_0.17.0.tar.gz'Content type 'application/x-gzip' length 242534 bytes (236 KB)==================================================downloaded 236 KB
* installing *source* package ‘arrow’ ...** package ‘arrow’ successfully unpacked and MD5 sums checked** using staged installation*** Successfully retrieved C++ source*** Building C++ libraries**** cmake**** arrow ./configure: line 132: cd: libarrow/arrow-0.17.0/lib: Not a directory------------------------- NOTE ---------------------------After installation, please run arrow::install_arrow()for help installing required runtime libraries---------------------------------------------------------** libsg++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array.cpp -o array.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_from_vector.cpp -o array_from_vector.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_to_vector.cpp -o array_to_vector.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arraydata.cpp -o arraydata.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arrowExports.cpp -o arrowExports.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c buffer.cpp -o buffer.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c chunkedarray.cpp -o chunkedarray.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compression.cpp -o compression.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compute.cpp -o compute.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c csv.cpp -o csv.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c dataset.cpp -o dataset.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c datatype.cpp -o datatype.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c expression.cpp -o expression.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c feather.cpp -o feather.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c field.cpp -o field.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c filesystem.cpp -o filesystem.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c io.cpp -o io.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c json.cpp -o json.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c memorypool.cpp -o memorypool.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c message.cpp -o message.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c parquet.cpp -o parquet.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c py-to-r.cpp -o py-to-r.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatch.cpp -o recordbatch.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchreader.cpp -o recordbatchreader.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchwriter.cpp -o recordbatchwriter.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c schema.cpp -o schema.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c symbols.cpp -o symbols.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c table.cpp -o table.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c threadpool.cpp -o threadpool.og++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib -lRinstalling to /home/hc/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs** R** inst** byte-compile and prepare package for lazy loading** help*** installing help indices converting help for package ‘arrow’ finding HTML links ... done ArrayData html ChunkedArray html Codec html CsvReadOptions html Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/CsvReadOptions.Rd:61: file link ‘read.csv’ in package ‘utils’ does not exist and so has been treated as a topic CsvTableReader html DataType html Dataset html DictionaryType html Expression html FeatherReader html Field html FileFormat html FileInfo html FileSelector html FileSystem html FixedWidthType html InputStream html MemoryPool html Message html MessageReader html OutputStream html ParquetFileReader html ParquetFileWriter html ParquetReaderProperties html ParquetWriterProperties html Partitioning html RecordBatch html RecordBatchReader html RecordBatchWriter html Scanner html Schema html Table html array html arrow-package html arrow_available html buffer html cast_options html codec_is_available html compression html cpu_count html data-type html dataset_factory html default_memory_pool html dictionary html enums html hive_partition html install_arrow html install_pyarrow html make_readable_file html map_batches html mmap_create html mmap_open html open_dataset html read_delim_arrow html read_feather html read_ipc_stream html read_json_arrow html read_message html read_parquet html read_record_batch html read_schema html reexports html Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:24: file link ‘print.integer64’ in package ‘bit64’ does not exist and so has been treated as a topicRd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:24: file link ‘str.integer64’ in package ‘bit64’ does not exist and so has been treated as a topicRd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘contains’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘ends_with’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘everything’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘last_col’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘matches’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘num_range’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘starts_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic type html unify_schemas html write_feather html write_ipc_stream html write_parquet html write_to_raw html ** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (arrow)
The downloaded source packages are in ‘/tmp/Rtmpo9otzy/downloaded_packages’> library(arrow)
Attaching package: ‘arrow’
The following object is masked from ‘package:utils’:
timestamp
> df <- read_parquet('/home/hc/my.10.level.20200331.2book.parquet')Error in io___MemoryMappedFile__Open(path, mode) : Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries. > arrow::install_arrow()Installing package into ‘/home/hc/R/x86_64-redhat-linux-gnu-library/3.6’(as ‘lib’ is unspecified)trying URL 'https://cran.rstudio.com/src/contrib/arrow_0.17.0.tar.gz'Content type 'application/x-gzip' length 242534 bytes (236 KB)==================================================downloaded 236 KB
* installing *source* package ‘arrow’ ...** package ‘arrow’ successfully unpacked and MD5 sums checked** using staged installation*** No C++ binaries found for centos-7.7.1908*** Successfully retrieved C++ source*** Building C++ libraries**** cmake**** arrow ./configure: line 132: cd: libarrow/arrow-0.17.0/lib: Not a directory------------------------- NOTE ---------------------------After installation, please run arrow::install_arrow()for help installing required runtime libraries---------------------------------------------------------** libsg++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array.cpp -o array.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_from_vector.cpp -o array_from_vector.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_to_vector.cpp -o array_to_vector.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arraydata.cpp -o arraydata.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arrowExports.cpp -o arrowExports.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c buffer.cpp -o buffer.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c chunkedarray.cpp -o chunkedarray.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compression.cpp -o compression.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compute.cpp -o compute.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c csv.cpp -o csv.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c dataset.cpp -o dataset.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c datatype.cpp -o datatype.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c expression.cpp -o expression.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c feather.cpp -o feather.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c field.cpp -o field.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c filesystem.cpp -o filesystem.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c io.cpp -o io.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c json.cpp -o json.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c memorypool.cpp -o memorypool.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c message.cpp -o message.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c parquet.cpp -o parquet.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c py-to-r.cpp -o py-to-r.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatch.cpp -o recordbatch.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchreader.cpp -o recordbatchreader.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchwriter.cpp -o recordbatchwriter.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c schema.cpp -o schema.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c symbols.cpp -o symbols.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c table.cpp -o table.og++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c threadpool.cpp -o threadpool.og++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib -lRinstalling to /home/hc/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs** R** inst** byte-compile and prepare package for lazy loading** help*** installing help indices converting help for package ‘arrow’ finding HTML links ... done ArrayData html ChunkedArray html Codec html CsvReadOptions html Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/CsvReadOptions.Rd:61: file link ‘read.csv’ in package ‘utils’ does not exist and so has been treated as a topic CsvTableReader html DataType html Dataset html DictionaryType html Expression html FeatherReader html Field html FileFormat html FileInfo html FileSelector html FileSystem html FixedWidthType html InputStream html MemoryPool html Message html MessageReader html OutputStream html ParquetFileReader html ParquetFileWriter html ParquetReaderProperties html ParquetWriterProperties html Partitioning html RecordBatch html RecordBatchReader html RecordBatchWriter html Scanner html Schema html Table html array html arrow-package html arrow_available html buffer html cast_options html codec_is_available html compression html cpu_count html data-type html dataset_factory html default_memory_pool html dictionary html enums html hive_partition html install_arrow html install_pyarrow html make_readable_file html map_batches html mmap_create html mmap_open html open_dataset html read_delim_arrow html read_feather html read_ipc_stream html read_json_arrow html read_message html read_parquet html read_record_batch html read_schema html reexports html Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:24: file link ‘print.integer64’ in package ‘bit64’ does not exist and so has been treated as a topicRd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:24: file link ‘str.integer64’ in package ‘bit64’ does not exist and so has been treated as a topicRd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘contains’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘ends_with’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘everything’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘last_col’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘matches’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘num_range’ in package ‘tidyselect’ does not exist and so has been treated as a topicRd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘starts_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic type html unify_schemas html write_feather html write_ipc_stream html write_parquet html write_to_raw html ** building package indices** installing vignettes** testing if installed package can be loaded from temporary location** checking absolute paths in shared objects and dynamic libraries** testing if installed package can be loaded from final location** testing if installed package keeps a record of temporary installation path* DONE (arrow)
The downloaded source packages are in ‘/tmp/Rtmpo9otzy/downloaded_packages’Please restart R to use the 'arrow' package.
Restarting R session...
> library(arrow)
Attaching package: ‘arrow’
The following object is masked from ‘package:utils’:
timestamp
> read_parquet('/home/hc/my.10.level.20200331.1.book.parquet')Error in io___MemoryMappedFile__Open(path, mode) : Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries. > library(arrow)> df <- read_parquet('/home/hc/my.10.level.20200331.1.book.parquet')Error in io___MemoryMappedFile__Open(path, mode) : Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries.
{code}
> Failed to Install arrow From CRAN
> ---------------------------------
>
> Key: ARROW-8586
> URL: https://issues.apache.org/jira/browse/ARROW-8586
> Project: Apache Arrow
> Issue Type: Bug
> Components: R
> Affects Versions: 0.17.0
> Environment: CentOS 7
> Reporter: Hei
> Priority: Major
>
> Hi,
> I am trying to install arrow via RStudio, but it seems like it is not working that after I installed the package, it kept asking me to run arrow::install_arrow() even after I did:
> {code}
> > install.packages("arrow")
> Installing package into ‘/home/hc/R/x86_64-redhat-linux-gnu-library/3.6’
> (as ‘lib’ is unspecified)
> trying URL 'https://cran.rstudio.com/src/contrib/arrow_0.17.0.tar.gz'
> Content type 'application/x-gzip' length 242534 bytes (236 KB)
> ==================================================
> downloaded 236 KB
> * installing *source* package ‘arrow’ ...
> ** package ‘arrow’ successfully unpacked and MD5 sums checked
> ** using staged installation
> *** Successfully retrieved C++ source
> *** Building C++ libraries
> **** cmake
> **** arrow
> ./configure: line 132: cd: libarrow/arrow-0.17.0/lib: Not a directory
> ------------------------- NOTE ---------------------------
> After installation, please run arrow::install_arrow()
> for help installing required runtime libraries
> ---------------------------------------------------------
> ** libs
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array.cpp -o array.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_from_vector.cpp -o array_from_vector.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_to_vector.cpp -o array_to_vector.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arraydata.cpp -o arraydata.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arrowExports.cpp -o arrowExports.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c buffer.cpp -o buffer.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c chunkedarray.cpp -o chunkedarray.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compression.cpp -o compression.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compute.cpp -o compute.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c csv.cpp -o csv.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c dataset.cpp -o dataset.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c datatype.cpp -o datatype.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c expression.cpp -o expression.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c feather.cpp -o feather.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c field.cpp -o field.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c filesystem.cpp -o filesystem.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c io.cpp -o io.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c json.cpp -o json.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c memorypool.cpp -o memorypool.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c message.cpp -o message.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c parquet.cpp -o parquet.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c py-to-r.cpp -o py-to-r.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatch.cpp -o recordbatch.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchreader.cpp -o recordbatchreader.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchwriter.cpp -o recordbatchwriter.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c schema.cpp -o schema.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c symbols.cpp -o symbols.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c table.cpp -o table.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c threadpool.cpp -o threadpool.o
> g++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib -lR
> installing to /home/hc/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs
> ** R
> ** inst
> ** byte-compile and prepare package for lazy loading
> ** help
> *** installing help indices
> converting help for package ‘arrow’
> finding HTML links ... done
> ArrayData html
> ChunkedArray html
> Codec html
> CsvReadOptions html
> Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/CsvReadOptions.Rd:61: file link ‘read.csv’ in package ‘utils’ does not exist and so has been treated as a topic
> CsvTableReader html
> DataType html
> Dataset html
> DictionaryType html
> Expression html
> FeatherReader html
> Field html
> FileFormat html
> FileInfo html
> FileSelector html
> FileSystem html
> FixedWidthType html
> InputStream html
> MemoryPool html
> Message html
> MessageReader html
> OutputStream html
> ParquetFileReader html
> ParquetFileWriter html
> ParquetReaderProperties html
> ParquetWriterProperties html
> Partitioning html
> RecordBatch html
> RecordBatchReader html
> RecordBatchWriter html
> Scanner html
> Schema html
> Table html
> array html
> arrow-package html
> arrow_available html
> buffer html
> cast_options html
> codec_is_available html
> compression html
> cpu_count html
> data-type html
> dataset_factory html
> default_memory_pool html
> dictionary html
> enums html
> hive_partition html
> install_arrow html
> install_pyarrow html
> make_readable_file html
> map_batches html
> mmap_create html
> mmap_open html
> open_dataset html
> read_delim_arrow html
> read_feather html
> read_ipc_stream html
> read_json_arrow html
> read_message html
> read_parquet html
> read_record_batch html
> read_schema html
> reexports html
> Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:24: file link ‘print.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:24: file link ‘str.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘contains’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘ends_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘everything’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘last_col’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘matches’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘num_range’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmpEMszQs/R.INSTALL6254154cd713/arrow/man/reexports.Rd:26: file link ‘starts_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> type html
> unify_schemas html
> write_feather html
> write_ipc_stream html
> write_parquet html
> write_to_raw html
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded from temporary location
> ** checking absolute paths in shared objects and dynamic libraries
> ** testing if installed package can be loaded from final location
> ** testing if installed package keeps a record of temporary installation path
> * DONE (arrow)
> The downloaded source packages are in
> ‘/tmp/Rtmpo9otzy/downloaded_packages’
> > library(arrow)
> Attaching package: ‘arrow’
> The following object is masked from ‘package:utils’:
> timestamp
> > df <- read_parquet('/home/hc/my.10.level.20200331.2book.parquet')
> Error in io___MemoryMappedFile__Open(path, mode) :
> Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries.
> > arrow::install_arrow()
> Installing package into ‘/home/hc/R/x86_64-redhat-linux-gnu-library/3.6’
> (as ‘lib’ is unspecified)
> trying URL 'https://cran.rstudio.com/src/contrib/arrow_0.17.0.tar.gz'
> Content type 'application/x-gzip' length 242534 bytes (236 KB)
> ==================================================
> downloaded 236 KB
> * installing *source* package ‘arrow’ ...
> ** package ‘arrow’ successfully unpacked and MD5 sums checked
> ** using staged installation
> *** No C++ binaries found for centos-7.7.1908
> *** Successfully retrieved C++ source
> *** Building C++ libraries
> **** cmake
> **** arrow
> ./configure: line 132: cd: libarrow/arrow-0.17.0/lib: Not a directory
> ------------------------- NOTE ---------------------------
> After installation, please run arrow::install_arrow()
> for help installing required runtime libraries
> ---------------------------------------------------------
> ** libs
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array.cpp -o array.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_from_vector.cpp -o array_from_vector.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c array_to_vector.cpp -o array_to_vector.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arraydata.cpp -o arraydata.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c arrowExports.cpp -o arrowExports.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c buffer.cpp -o buffer.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c chunkedarray.cpp -o chunkedarray.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compression.cpp -o compression.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c compute.cpp -o compute.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c csv.cpp -o csv.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c dataset.cpp -o dataset.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c datatype.cpp -o datatype.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c expression.cpp -o expression.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c feather.cpp -o feather.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c field.cpp -o field.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c filesystem.cpp -o filesystem.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c io.cpp -o io.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c json.cpp -o json.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c memorypool.cpp -o memorypool.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c message.cpp -o message.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c parquet.cpp -o parquet.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c py-to-r.cpp -o py-to-r.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatch.cpp -o recordbatch.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchreader.cpp -o recordbatchreader.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c recordbatchwriter.cpp -o recordbatchwriter.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c schema.cpp -o schema.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c symbols.cpp -o symbols.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c table.cpp -o table.o
> g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG -I"/home/hc/R/x86_64-redhat-linux-gnu-library/3.6/Rcpp/include" -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -c threadpool.cpp -o threadpool.o
> g++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/usr/lib64/R/lib -lR
> installing to /home/hc/R/x86_64-redhat-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs
> ** R
> ** inst
> ** byte-compile and prepare package for lazy loading
> ** help
> *** installing help indices
> converting help for package ‘arrow’
> finding HTML links ... done
> ArrayData html
> ChunkedArray html
> Codec html
> CsvReadOptions html
> Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/CsvReadOptions.Rd:61: file link ‘read.csv’ in package ‘utils’ does not exist and so has been treated as a topic
> CsvTableReader html
> DataType html
> Dataset html
> DictionaryType html
> Expression html
> FeatherReader html
> Field html
> FileFormat html
> FileInfo html
> FileSelector html
> FileSystem html
> FixedWidthType html
> InputStream html
> MemoryPool html
> Message html
> MessageReader html
> OutputStream html
> ParquetFileReader html
> ParquetFileWriter html
> ParquetReaderProperties html
> ParquetWriterProperties html
> Partitioning html
> RecordBatch html
> RecordBatchReader html
> RecordBatchWriter html
> Scanner html
> Schema html
> Table html
> array html
> arrow-package html
> arrow_available html
> buffer html
> cast_options html
> codec_is_available html
> compression html
> cpu_count html
> data-type html
> dataset_factory html
> default_memory_pool html
> dictionary html
> enums html
> hive_partition html
> install_arrow html
> install_pyarrow html
> make_readable_file html
> map_batches html
> mmap_create html
> mmap_open html
> open_dataset html
> read_delim_arrow html
> read_feather html
> read_ipc_stream html
> read_json_arrow html
> read_message html
> read_parquet html
> read_record_batch html
> read_schema html
> reexports html
> Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:24: file link ‘print.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:24: file link ‘str.integer64’ in package ‘bit64’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘contains’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘ends_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘everything’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘last_col’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘matches’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘num_range’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> Rd warning: /tmp/RtmppYi3Tc/R.INSTALL7ba654278045/arrow/man/reexports.Rd:26: file link ‘starts_with’ in package ‘tidyselect’ does not exist and so has been treated as a topic
> type html
> unify_schemas html
> write_feather html
> write_ipc_stream html
> write_parquet html
> write_to_raw html
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded from temporary location
> ** checking absolute paths in shared objects and dynamic libraries
> ** testing if installed package can be loaded from final location
> ** testing if installed package keeps a record of temporary installation path
> * DONE (arrow)
> The downloaded source packages are in
> ‘/tmp/Rtmpo9otzy/downloaded_packages’
> Please restart R to use the 'arrow' package.
> Restarting R session...
> > library(arrow)
> Attaching package: ‘arrow’
> The following object is masked from ‘package:utils’:
> timestamp
> > read_parquet('/home/hc/my.10.level.20200331.1.book.parquet')
> Error in io___MemoryMappedFile__Open(path, mode) :
> Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries.
> > library(arrow)
> > df <- read_parquet('/home/hc/my.10.level.20200331.1.book.parquet')
> Error in io___MemoryMappedFile__Open(path, mode) :
> Cannot call io___MemoryMappedFile__Open(). Please use arrow::install_arrow() to install required runtime libraries.
> {code}
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