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Posted to users@airavata.apache.org by Bhanu Rekepalli <bh...@bioteam.net> on 2015/08/25 17:19:58 UTC
Issues moving data from my PGA server to stampede
Hi:
I am hosting PGA on EC2 instance and I currently cannot move data from EC2 to Stampede.
On the contrary I can get data files from Stampede to EC2 instance.
Following is the error I am getting.
org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during scping local file://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta to remote file stampede.tacc.xsede.org:rFile : /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) ... 10 more org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler org.apache.airavata.gfac.GFacException: Error launching the Job at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:505) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:743) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) ... 5 more Caused by: org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:910) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) ... 6 more Caused by: org.apache.airavata.gfac.GFacException: Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:899) ... 7 more Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) ... 7 more Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during scping local file://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta to remote file stampede.tacc.xsede.org:rFile : /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) ... 10 more
Re: Issues moving data from my PGA server to stampede
Posted by Supun Nakandala <su...@gmail.com>.
Hi Bhanu & Suresh,
In PGA we assume that PGA and Airavata are located in two different hosts.
So when creating experiments from pga for input files we provide the path
in remote format (i.e user@host:/<path>) and assume that
AdvancedSCPInputHandler is enabled. AdvancedSCPInputHandler will first copy
the files to Airavata host and change the file paths to local file paths in
the job execution context.
For the SSHInputHandler to copy the files the file paths should be in local
format. I think in Bhanu's setting this fails because we haven't enabled
AdvancedSCPInputHandler so the file paths are in remote format and
SSHInputHandler fails to copy the files.
To verify this issue we can try enabling AdvancedSCPInputHandler to copy
files to a different folder. If that is the case then we can provide a fix
from PGA or side or Airavata side.
On Wed, Aug 26, 2015 at 12:30 AM, Bhanu Rekapalli <bh...@bioteam.net> wrote:
> Hi Suresh,
> Caught up in meetings and demo till now.
> Do you want both AA and PGA folders?
> Bhanu
>
> On Tue, Aug 25, 2015 at 12:34 PM, Suresh Marru <su...@gmail.com>
> wrote:
>
>> Yes we tried that and it works ok. I think this has a small issue
>> somewhere in parsing the URL’s and handshake between PGA and Airavata on
>> setting these file paths.
>>
>> Suresh
>>
>> On Aug 25, 2015, at 12:26 PM, Pierce, Marlon <ma...@iu.edu> wrote:
>>
>> Is there a way to check SCP on the command line?
>>
>> From: Suresh Marru <su...@gmail.com>
>> Reply-To: Airavata Users <us...@airavata.apache.org>
>> Date: Tuesday, August 25, 2015 at 11:49 AM
>> To: Airavata Users <us...@airavata.apache.org>
>> Subject: Re: Issues moving data from my PGA server to stampede
>>
>> Hi Supun, Shameera,
>>
>> We can reproduce this issue the following way:
>>
>> Install a PGA and Airavata locally, upload a file and have Airavata stage
>> it to XSEDE resource. When the hostname name is localhost, something is not
>> picking up the file path. Can we try and reproduce it on one of the VM?
>>
>> Hi Bhanu,
>>
>> Is it possible to save the Amazon VM with all the installation you have
>> and share it with us? We can then deploy that on EC2 instance and see if we
>> can get it working.
>>
>> Suresh
>>
>>
>> On Aug 25, 2015, at 11:19 AM, Bhanu Rekepalli <bh...@bioteam.net> wrote:
>>
>> Hi:
>> I am hosting PGA on EC2 instance and I currently cannot move data from
>> EC2 to Stampede.
>> On the contrary I can get data files from Stampede to EC2 instance.
>>
>> Following is the error I am getting.
>> org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while
>> input File Staging at
>> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191)
>> at
>> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105)
>> at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895)
>> at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686)
>> at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492)
>> at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183)
>> at
>> org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47)
>> at
>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>> at
>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>> at java.lang.Thread.run(Thread.java:745) Caused by:
>> org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while
>> input File Staging at
>> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183)
>> ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException:
>> Failed during scping local
>> file://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta
>> to remote file stampede.tacc.xsede.org:rFile :
>> /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta
>> at
>> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470)
>> at
>> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177)
>> ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta
>> (No such file or directory) at java.io.FileInputStream.open0(Native Method)
>> at java.io.FileInputStream.open(FileInputStream.java:195) at
>> java.io.FileInputStream.(FileInputStream.java:138) at
>> java.io.FileInputStream.(FileInputStream.java:93) at
>> org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at
>> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463)
>> ... 10 more org.apache.airavata.gfac.GFacException: Error Invoking
>> Handlers:Error Executing a InFlow Handler
>> org.apache.airavata.gfac.GFacException: Error launching the Job at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:505)
>> at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183)
>> at
>> org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47)
>> at
>> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>> at
>> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>> at java.lang.Thread.run(Thread.java:745) Caused by:
>> org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error
>> Executing a InFlow Handler at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:743)
>> at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492)
>> ... 5 more Caused by: org.apache.airavata.gfac.GFacException: Error
>> Invoking Handlers:Error Executing a InFlow Handler at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:910)
>> at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686)
>> ... 6 more Caused by: org.apache.airavata.gfac.GFacException: Error
>> Executing a InFlow Handler at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:899)
>> ... 7 more Caused by:
>> org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while
>> input File Staging at
>> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191)
>> at
>> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105)
>> at
>> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895)
>> ... 7 more Caused by:
>> org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while
>> input File Staging at
>> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183)
>> ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException:
>> Failed during scping local
>> file://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta
>> to remote file stampede.tacc.xsede.org:rFile :
>> /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta
>> at
>> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470)
>> at
>> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177)
>> ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta
>> (No such file or directory) at java.io.FileInputStream.open0(Native Method)
>> at java.io.FileInputStream.open(FileInputStream.java:195) at
>> java.io.FileInputStream.(FileInputStream.java:138) at
>> java.io.FileInputStream.(FileInputStream.java:93) at
>> org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at
>> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463)
>> ... 10 more
>>
>>
>>
>>
>
>
> --
> Bhanu Rekepalli, PhD
> Sr. Scientific Consultant & Principal Investigator
> BioTeam <http://bioteam.net/>: Enabling Science
>
> 7 Derosier Drive, Middleton, MA 01949
> Off. Phones: 800-293-7090, 865-240-2910
> Cell: 865-230-1605
>
--
Thank you
Supun Nakandala
Dept. Computer Science and Engineering
University of Moratuwa
Re: Issues moving data from my PGA server to stampede
Posted by Bhanu Rekapalli <bh...@bioteam.net>.
Hi Suresh,
Caught up in meetings and demo till now.
Do you want both AA and PGA folders?
Bhanu
On Tue, Aug 25, 2015 at 12:34 PM, Suresh Marru <su...@gmail.com>
wrote:
> Yes we tried that and it works ok. I think this has a small issue
> somewhere in parsing the URL’s and handshake between PGA and Airavata on
> setting these file paths.
>
> Suresh
>
> On Aug 25, 2015, at 12:26 PM, Pierce, Marlon <ma...@iu.edu> wrote:
>
> Is there a way to check SCP on the command line?
>
> From: Suresh Marru <su...@gmail.com>
> Reply-To: Airavata Users <us...@airavata.apache.org>
> Date: Tuesday, August 25, 2015 at 11:49 AM
> To: Airavata Users <us...@airavata.apache.org>
> Subject: Re: Issues moving data from my PGA server to stampede
>
> Hi Supun, Shameera,
>
> We can reproduce this issue the following way:
>
> Install a PGA and Airavata locally, upload a file and have Airavata stage
> it to XSEDE resource. When the hostname name is localhost, something is not
> picking up the file path. Can we try and reproduce it on one of the VM?
>
> Hi Bhanu,
>
> Is it possible to save the Amazon VM with all the installation you have
> and share it with us? We can then deploy that on EC2 instance and see if we
> can get it working.
>
> Suresh
>
>
> On Aug 25, 2015, at 11:19 AM, Bhanu Rekepalli <bh...@bioteam.net> wrote:
>
> Hi:
> I am hosting PGA on EC2 instance and I currently cannot move data from EC2
> to Stampede.
> On the contrary I can get data files from Stampede to EC2 instance.
>
> Following is the error I am getting.
> org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while
> input File Staging at
> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191)
> at
> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105)
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895)
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686)
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492)
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183)
> at
> org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745) Caused by:
> org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while
> input File Staging at
> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183)
> ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException:
> Failed during scping local
> file://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta
> to remote file stampede.tacc.xsede.org:rFile :
> /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta
> at
> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470)
> at
> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177)
> ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta
> (No such file or directory) at java.io.FileInputStream.open0(Native Method)
> at java.io.FileInputStream.open(FileInputStream.java:195) at
> java.io.FileInputStream.(FileInputStream.java:138) at
> java.io.FileInputStream.(FileInputStream.java:93) at
> org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at
> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463)
> ... 10 more org.apache.airavata.gfac.GFacException: Error Invoking
> Handlers:Error Executing a InFlow Handler
> org.apache.airavata.gfac.GFacException: Error launching the Job at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:505)
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183)
> at
> org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:745) Caused by:
> org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error
> Executing a InFlow Handler at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:743)
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492)
> ... 5 more Caused by: org.apache.airavata.gfac.GFacException: Error
> Invoking Handlers:Error Executing a InFlow Handler at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:910)
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686)
> ... 6 more Caused by: org.apache.airavata.gfac.GFacException: Error
> Executing a InFlow Handler at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:899)
> ... 7 more Caused by:
> org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while
> input File Staging at
> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191)
> at
> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105)
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895)
> ... 7 more Caused by:
> org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while
> input File Staging at
> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183)
> ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException:
> Failed during scping local
> file://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta
> to remote file stampede.tacc.xsede.org:rFile :
> /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta
> at
> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470)
> at
> org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177)
> ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta
> (No such file or directory) at java.io.FileInputStream.open0(Native Method)
> at java.io.FileInputStream.open(FileInputStream.java:195) at
> java.io.FileInputStream.(FileInputStream.java:138) at
> java.io.FileInputStream.(FileInputStream.java:93) at
> org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at
> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463)
> ... 10 more
>
>
>
>
--
Bhanu Rekepalli, PhD
Sr. Scientific Consultant & Principal Investigator
BioTeam <http://bioteam.net/>: Enabling Science
7 Derosier Drive, Middleton, MA 01949
Off. Phones: 800-293-7090, 865-240-2910
Cell: 865-230-1605
Re: Issues moving data from my PGA server to stampede
Posted by Suresh Marru <su...@gmail.com>.
Yes we tried that and it works ok. I think this has a small issue somewhere in parsing the URL’s and handshake between PGA and Airavata on setting these file paths.
Suresh
> On Aug 25, 2015, at 12:26 PM, Pierce, Marlon <ma...@iu.edu> wrote:
>
> Is there a way to check SCP on the command line?
>
> From: Suresh Marru <sureshmarru@gmail.com <ma...@gmail.com>>
> Reply-To: Airavata Users <users@airavata.apache.org <ma...@airavata.apache.org>>
> Date: Tuesday, August 25, 2015 at 11:49 AM
> To: Airavata Users <users@airavata.apache.org <ma...@airavata.apache.org>>
> Subject: Re: Issues moving data from my PGA server to stampede
>
> Hi Supun, Shameera,
>
> We can reproduce this issue the following way:
>
> Install a PGA and Airavata locally, upload a file and have Airavata stage it to XSEDE resource. When the hostname name is localhost, something is not picking up the file path. Can we try and reproduce it on one of the VM?
>
> Hi Bhanu,
>
> Is it possible to save the Amazon VM with all the installation you have and share it with us? We can then deploy that on EC2 instance and see if we can get it working.
>
> Suresh
>
>
>> On Aug 25, 2015, at 11:19 AM, Bhanu Rekepalli <bhanu@bioteam.net <ma...@bioteam.net>> wrote:
>>
>> Hi:
>> I am hosting PGA on EC2 instance and I currently cannot move data from EC2 to Stampede.
>> On the contrary I can get data files from Stampede to EC2 instance.
>>
>> Following is the error I am getting.
>> org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during scping localfile://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta <file:///bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta> to remote file stampede.tacc.xsede.org:rFile : /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18 <ma...@54.225.215.18>:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) ... 10 more org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler org.apache.airavata.gfac.GFacException: Error launching the Job at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:505) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:743) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) ... 5 more Caused by: org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:910) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) ... 6 more Caused by: org.apache.airavata.gfac.GFacException: Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:899) ... 7 more Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) ... 7 more Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during scping localfile://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta <file:///bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta> to remote file stampede.tacc.xsede.org:rFile : /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18 <ma...@54.225.215.18>:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) ... 10 more
>
Re: Issues moving data from my PGA server to stampede
Posted by "Pierce, Marlon" <ma...@iu.edu>.
Is there a way to check SCP on the command line?
From: Suresh Marru <su...@gmail.com>>
Reply-To: Airavata Users <us...@airavata.apache.org>>
Date: Tuesday, August 25, 2015 at 11:49 AM
To: Airavata Users <us...@airavata.apache.org>>
Subject: Re: Issues moving data from my PGA server to stampede
Hi Supun, Shameera,
We can reproduce this issue the following way:
Install a PGA and Airavata locally, upload a file and have Airavata stage it to XSEDE resource. When the hostname name is localhost, something is not picking up the file path. Can we try and reproduce it on one of the VM?
Hi Bhanu,
Is it possible to save the Amazon VM with all the installation you have and share it with us? We can then deploy that on EC2 instance and see if we can get it working.
Suresh
On Aug 25, 2015, at 11:19 AM, Bhanu Rekepalli <bh...@bioteam.net>> wrote:
Hi:
I am hosting PGA on EC2 instance and I currently cannot move data from EC2 to Stampede.
On the contrary I can get data files from Stampede to EC2 instance.
Following is the error I am getting.
org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during scping local file://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta<file:///bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta> to remote file stampede.tacc.xsede.org:rFile : /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18<ma...@54.225.215.18>:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) ... 10 more org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler org.apache.airavata.gfac.GFacException: Error launching the Job at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:505) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:743) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) ... 5 more Caused by: org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:910) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) ... 6 more Caused by: org.apache.airavata.gfac.GFacException: Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:899) ... 7 more Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) ... 7 more Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during scping local file://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta<file:///bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta> to remote file stampede.tacc.xsede.org:rFile : /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18<ma...@54.225.215.18>:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) ... 10 more
Re: Issues moving data from my PGA server to stampede
Posted by Suresh Marru <su...@gmail.com>.
Hi Supun, Shameera,
We can reproduce this issue the following way:
Install a PGA and Airavata locally, upload a file and have Airavata stage it to XSEDE resource. When the hostname name is localhost, something is not picking up the file path. Can we try and reproduce it on one of the VM?
Hi Bhanu,
Is it possible to save the Amazon VM with all the installation you have and share it with us? We can then deploy that on EC2 instance and see if we can get it working.
Suresh
> On Aug 25, 2015, at 11:19 AM, Bhanu Rekepalli <bh...@bioteam.net> wrote:
>
> Hi:
> I am hosting PGA on EC2 instance and I currently cannot move data from EC2 to Stampede.
> On the contrary I can get data files from Stampede to EC2 instance.
>
> Following is the error I am getting.
> org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during scping local file://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta <file:///bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta> to remote file stampede.tacc.xsede.org:rFile : /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18 <ma...@54.225.215.18>:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) ... 10 more org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler org.apache.airavata.gfac.GFacException: Error launching the Job at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:505) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:183) at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:743) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:492) ... 5 more Caused by: org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:910) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:686) ... 6 more Caused by: org.apache.airavata.gfac.GFacException: Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:899) ... 7 more Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:191) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.invoke(SSHInputHandler.java:105) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:895) ... 7 more Caused by: org.apache.airavata.gfac.core.handler.GFacHandlerException: Error while input File Staging at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:183) ... 9 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during scping local file://bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta <file:///bhanu@54.225.215.18:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta> to remote file stampede.tacc.xsede.org:rFile : /scratch/01437/ogce/usda-workdirs/mt_68c0b9ee-7ea9-4d5b-bff8-e151091a07c0/testFasta at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:470) at org.apache.airavata.gfac.ssh.handler.SSHInputHandler.stageInputFiles(SSHInputHandler.java:177) ... 9 more Caused by: java.io.FileNotFoundException: /bhanu@54.225.215.18 <ma...@54.225.215.18>:/var/www/html/experimentData/rekepalli7b79a4a79919d9cd100656fadf897e89/testFasta (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at org.apache.airavata.gsi.ssh.util.SSHUtils.scpTo(SSHUtils.java:293) at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.scpTo(GSISSHAbstractCluster.java:463) ... 10 more