You are viewing a plain text version of this content. The canonical link for it is here.
Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2017/09/29 19:12:12 UTC
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #5
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/5/display/redirect?page=changes>
Changes:
[tmill] Add script for extracting markables from a corpus for analysis.
------------------------------------------
[...truncated 990.78 KB...]
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
29 Sep 2017 19:10:58 INFO RegressionPipelineTest - Creating directory: testdata/generatedoutput/RegressionPipelineCPETest
29 Sep 2017 19:10:58 INFO RegressionPipelineTest - Parsing CPE Descriptor:RegressionPipelineCPETest.xml
29 Sep 2017 19:10:59 INFO Chunker - Chunker model file: org/apache/ctakes/chunker/models/chunker-model.zip
29 Sep 2017 19:11:01 INFO ContextAnnotator - Using left , right scope sizes: 7 , 7
29 Sep 2017 19:11:01 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
29 Sep 2017 19:11:01 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
29 Sep 2017 19:11:01 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.negation.NegationContextAnalyzer
29 Sep 2017 19:11:01 INFO NegationContextAnalyzer - initBoundaryData() called for ContextInitializer
29 Sep 2017 19:11:01 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.negation.NegationContextHitConsumer
29 Sep 2017 19:11:01 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
29 Sep 2017 19:11:01 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
29 Sep 2017 19:11:01 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
29 Sep 2017 19:11:01 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
29 Sep 2017 19:11:01 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
29 Sep 2017 19:11:01 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
29 Sep 2017 19:11:02 INFO ContextAnnotator - Using left , right scope sizes: 10 , 10
29 Sep 2017 19:11:02 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
29 Sep 2017 19:11:02 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
29 Sep 2017 19:11:02 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.status.StatusContextAnalyzer
29 Sep 2017 19:11:02 INFO StatusContextAnalyzer - initBoundaryData() called for ContextInitializer
29 Sep 2017 19:11:02 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.status.StatusContextHitConsumer
29 Sep 2017 19:11:02 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
29 Sep 2017 19:11:02 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
29 Sep 2017 19:11:02 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
29 Sep 2017 19:11:02 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
29 Sep 2017 19:11:02 INFO AbstractJCasTermAnnotator - Using dictionary lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
29 Sep 2017 19:11:02 INFO AbstractJCasTermAnnotator - Exclusion tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS WRB
29 Sep 2017 19:11:02 INFO AbstractJCasTermAnnotator - Using minimum term text span: 3
29 Sep 2017 19:11:02 INFO AbstractJCasTermAnnotator - Using Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml
29 Sep 2017 19:11:02 INFO DictionaryDescriptorParser - Parsing dictionary specifications:
29 Sep 2017 19:11:02 ERROR UmlsUserApprover - User CHANGE_ME not allowed. It is a placeholder reminder.
29 Sep 2017 19:11:02 ERROR UmlsUserApprover - Verify that you are setting command-line option --user or ctakes property umlsUser or environment variable ctakes.umlsuser properly.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 4.771 sec <<< FAILURE!
Results :
Tests in error:
testCPE(org.apache.ctakes.regression.test.RegressionPipelineTest): Initialization of CAS Processor with name "RegressionPipelineAggregateTest" failed.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES template filler 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-template-filler ---
[INFO] Compiling 1 source file to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/classes>
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-template-filler ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-template-filler ---
[INFO] Surefire report directory: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-template-filler ---
[INFO] Building jar: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar>
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-template-filler ---
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.jar
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.pom
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 5.142 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.294 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.778 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.497 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.380 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.868 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 5.074 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.169 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 6.199 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.341 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.614 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.834 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.866 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.792 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.451 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 32.104 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.674 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.372 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.679 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.969 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.508 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.962 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.875 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.459 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.265 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.962 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.194 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 24.732 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 47.550 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 7.027 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.379 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.802 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.615 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [ 24.405 s]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.501 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.604 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.596 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.907 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.501 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.657 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.595 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.149 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.432 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.442 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:23 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.854 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 12.159 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 09:05 min
[INFO] Finished at: 2017-09-29T19:11:53Z
[INFO] Final Memory: 123M/1535M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-temporal/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #37
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/37/display/redirect?page=changes>
Changes:
[tmill] Fix to patient-aware coreference with new API. Compiles and evaluates correctly.
------------------------------------------
[...truncated 1.55 MB...]
[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4685ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=26ms
[INFO] Sensor JavaSquidSensor (done) | time=4722ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=1ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=35ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=1ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1789ms, dir size=18 MB
[INFO] Analysis reports compressed in 3835ms, zip size=7 MB
[INFO] Analysis report uploaded in 2571ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_LtiI5mqiS_xQKKaVk
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:13 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.837 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.762 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 9.659 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.953 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.558 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.812 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.382 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.999 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.525 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 4.042 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.098 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 48.318 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 26.431 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 53.254 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [01:30 min]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [01:03 min]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 54.430 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [01:09 min]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [01:27 min]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [01:09 min]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [01:11 min]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 47.567 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [01:08 min]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [01:28 min]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [01:32 min]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 52.649 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [01:10 min]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [01:42 min]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 18.834 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.519 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.729 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 36.039 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:08 min]
[INFO] Apache cTAKES CoReference Resolver ................. FAILURE [ 56.172 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 35.137 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 42.828 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 35.904 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 52.429 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 31.857 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.521 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.583 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 4.519 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.957 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 22.086 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [01:45 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [03:07 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [02:16 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SUCCESS [01:17 min]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 01:01 h
[INFO] Finished at: 2017-11-17T20:49:56Z
[INFO] Final Memory: 173M/3345M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[21,45] error: package jdk.internal.org.objectweb.asm.commons does not exist
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org tmill@apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #36
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/36/display/redirect?page=changes>
Changes:
[alexz] CTAKES-458: Upgrade apache parent pom, fix apache-rat
------------------------------------------
[...truncated 1.40 MB...]
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=16ms
[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4968ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=37ms
[INFO] Sensor JavaSquidSensor (done) | time=5011ms
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=2ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=1ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=49ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1651ms, dir size=18 MB
[INFO] Analysis reports compressed in 3485ms, zip size=7 MB
[INFO] Analysis report uploaded in 3159ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_LeSrTmqiS_xQKKaVj
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:28 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.545 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.815 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.547 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.040 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 35.919 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 17.500 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.542 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.401 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.356 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.879 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 5.323 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 23.779 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.909 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.804 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 30.590 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 5.061 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.595 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.576 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.056 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.563 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.717 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.065 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.731 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 4.455 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.514 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.390 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 34.330 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 38.830 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.356 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.493 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.516 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 37.169 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [15:09 min]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 3.060 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 10.546 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.727 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.313 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 3.006 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 39.656 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 46.725 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [01:22 min]
[INFO] ctakes-examples-res ................................ SUCCESS [ 36.332 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [01:09 min]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [03:39 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [03:27 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [04:36 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SUCCESS [01:35 min]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 54:30 min
[INFO] Finished at: 2017-11-17T19:37:03Z
[INFO] Final Memory: 156M/3368M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Failure or timeout -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #35
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/35/display/redirect?page=changes>
Changes:
[seanfinan] Boyscouting, replace explicit maven-exec version numbers
[seanfinan] Add piper gui profile
------------------------------------------
[...truncated 1.58 MB...]
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=15ms
[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=0ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=1ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=5007ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=28ms
[INFO] Sensor JavaSquidSensor (done) | time=5043ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=35ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1724ms, dir size=18 MB
[INFO] Analysis reports compressed in 3537ms, zip size=7 MB
[INFO] Analysis report uploaded in 2776ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_K-1camqiS_xQKKaVh
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:00 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.830 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.871 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.680 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.407 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 24.226 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.688 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.416 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.581 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 15.705 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.781 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.231 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 21.187 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.990 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.475 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 50.276 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 6.140 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.533 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.807 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.048 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.503 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.230 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.046 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.543 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.968 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 4.782 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.530 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 18.258 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 44.046 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 7.003 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.500 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 7.289 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.733 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:19 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 11.200 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.580 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.264 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.914 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 20.588 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.729 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.881 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.757 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.233 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.507 s]
[INFO] ctakes-examples .................................... SUCCESS [ 9.153 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 16.808 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [01:26 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [01:51 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [01:18 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [ 11.062 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 23.742 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 25:52 min
[INFO] Finished at: 2017-11-17T17:21:38Z
[INFO] Final Memory: 195M/3370M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex-uima
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #34
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/34/display/redirect?page=changes>
Changes:
[seanfinan] Fix for typo (inattentiveness)
------------------------------------------
[...truncated 1.13 MB...]
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=12ms
[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4350ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=28ms
[INFO] Sensor JavaSquidSensor (done) | time=4383ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=34ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1411ms, dir size=18 MB
[INFO] Analysis reports compressed in 2806ms, zip size=7 MB
[INFO] Analysis report uploaded in 3373ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_Ka0BBmqiS_xQKKaVf
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:11 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 55.381 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 38.848 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [01:12 min]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 39.740 s]
[INFO] Apache cTAKES core ................................. SUCCESS [03:45 min]
[INFO] ctakes-gui ......................................... SUCCESS [01:11 min]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [01:10 min]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [01:11 min]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 52.283 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [01:20 min]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 13.555 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 9.676 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.862 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.747 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 30.750 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.817 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.499 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.650 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.780 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 4.752 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.860 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.073 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 14.380 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.398 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.354 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.262 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 23.007 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 41.665 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.191 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.435 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.427 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.245 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:57 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.176 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.534 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.668 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.547 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.279 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.801 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 7.026 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.509 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.387 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.447 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.133 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 19.406 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 16.345 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [ 9.137 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.138 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 30:29 min
[INFO] Finished at: 2017-11-17T14:39:46Z
[INFO] Final Memory: 161M/3369M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config) on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124: java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file =/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method: openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission denied)
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #33
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/33/display/redirect>
------------------------------------------
[...truncated 1.40 MB...]
[INFO] Sensor CPD Block Indexer (done) | time=19ms
[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4899ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=44ms
[INFO] Sensor JavaSquidSensor (done) | time=4950ms
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=1ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=22ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=63ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1576ms, dir size=18 MB
[INFO] Analysis reports compressed in 3415ms, zip size=7 MB
[INFO] Analysis report uploaded in 3024ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_KRFLRmqiS_xQKKaVe
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:51 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.729 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.930 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.377 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.930 s]
[INFO] Apache cTAKES core ................................. SUCCESS [01:13 min]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.199 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 16.068 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.081 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.677 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.972 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.978 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 11.761 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 5.477 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 6.280 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 29.047 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 22.666 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 20.604 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 19.684 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 22.288 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 19.059 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 20.228 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 18.837 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 18.085 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 21.574 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 21.398 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 34.779 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [01:15 min]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [01:10 min]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 37.324 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 17.478 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 18.566 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 52.661 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [16:00 min]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 19.843 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 57.911 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 18.736 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 53.495 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 35.011 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 52.183 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 22.280 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 18.380 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 36.444 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 34.157 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [03:02 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [02:42 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [02:11 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 38.990 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 56:17 min
[INFO] Finished at: 2017-11-17T14:00:16Z
[INFO] Final Memory: 158M/3364M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Failure or timeout -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #32
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/32/display/redirect>
------------------------------------------
[...truncated 1.12 MB...]
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=12ms
[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4147ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=24ms
[INFO] Sensor JavaSquidSensor (done) | time=4177ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=33ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1349ms, dir size=18 MB
[INFO] Analysis reports compressed in 3064ms, zip size=7 MB
[INFO] Analysis report uploaded in 2305ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_HccI5mqiS_xQKKaVQ
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:07 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.132 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.632 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 6.372 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.393 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 21.627 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 3.754 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.173 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 4.950 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.306 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.332 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.807 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.139 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.509 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.934 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 38.079 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.553 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.581 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.265 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.812 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.230 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.666 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.887 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.652 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.203 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.071 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.015 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.995 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 38.441 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 5.964 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.365 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.575 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 9.524 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:50 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.146 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.522 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.706 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.777 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.137 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.486 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.783 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.434 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.074 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.427 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.721 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.503 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 16.528 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [ 10.198 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.663 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 13:40 min
[INFO] Finished at: 2017-11-17T00:48:01Z
[INFO] Final Memory: 143M/1631M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config) on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124: java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file =/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method: openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission denied)
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #31
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/31/display/redirect?page=changes>
Changes:
[alexz] CTAKES-480: fix pom.xml to remove exclusion for apache-profile
[alexz] CTAKES-479: add UmlsEnvironmentConfiguration.java
------------------------------------------
[...truncated 1.13 MB...]
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=12ms
[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4370ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=24ms
[INFO] Sensor JavaSquidSensor (done) | time=4400ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=2ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=34ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1099 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1442ms, dir size=18 MB
[INFO] Analysis reports compressed in 2827ms, zip size=7 MB
[INFO] Analysis report uploaded in 2162ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_HNOKTmqiS_xQKKaVP
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:14 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.150 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.600 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.354 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.533 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 22.899 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 3.923 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.347 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.453 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.269 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.443 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.934 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 9.470 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.853 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.441 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 32.995 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.760 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.397 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.548 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.583 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.648 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.591 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.031 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.537 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.240 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 4.733 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.077 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.424 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 40.464 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 5.865 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.387 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 7.144 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.519 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:56 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 8.854 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.591 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.277 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.555 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.280 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.583 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.201 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.739 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.081 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.571 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.372 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.486 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 17.158 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SUCCESS [ 10.202 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.442 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 13:40 min
[INFO] Finished at: 2017-11-16T23:41:31Z
[INFO] Final Memory: 153M/1671M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config) on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124: java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file =/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method: openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission denied)
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #30
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/30/display/redirect?page=changes>
Changes:
[alexz] CTAKES-479: skip testCPE when UMLS credentials not exported as env vars
------------------------------------------
[...truncated 864.93 KB...]
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1609ms, dir size=18 MB
[INFO] Analysis reports compressed in 2871ms, zip size=7 MB
[INFO] Analysis report uploaded in 2185ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_G_ACxmqiS_xQKKaVN
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:47 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.064 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.655 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.764 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.901 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.973 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 5.606 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.632 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.203 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.293 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.581 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.756 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.346 s]
[INFO] Apache cTAKES dictionary lookup .................... FAILURE [ 3.203 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.597 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 28.714 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 5.556 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.502 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 5.736 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.883 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.840 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 8.779 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.961 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.479 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.096 s]
[INFO] Apache cTAKES dictionary lookup fast ............... FAILURE [ 1.773 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 3.855 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 24.067 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 51.913 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 8.989 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.695 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED
[INFO] Apache cTAKES Relation Extractor ................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.814 s]
[INFO] Apache cTAKES Drug NER ............................. SKIPPED
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.720 s]
[INFO] Apache cTAKES Side Effects ......................... SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 3.119 s]
[INFO] Apache cTAKES Smoking Status ....................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.541 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.064 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.505 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.362 s]
[INFO] Apache cTAKES YTEX ................................. SKIPPED
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 11:06 min
[INFO] Finished at: 2017-11-16T22:39:20Z
[INFO] Final Memory: 119M/1625M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-dictionary-lookup: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[22,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[21,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,45] [unchecked] unchecked method invocation: method organizeByOffset in class BaseLookupConsumerImpl is applied to given types
[ERROR] required: Iterator<LookupHit>
[ERROR] found: Iterator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/AssertionCuePhraseConsumerImpl.java>:[96,46] [unchecked] unchecked conversion
[ERROR] required: Iterator<LookupHit>
[ERROR] found: Iterator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/algorithms/FirstTokenPermutationImpl.java>:[213,44] [unchecked] unchecked conversion
[ERROR] required: List<Integer>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsToSnomedLuceneConsumerImpl.java>:[94,34] [deprecation] open(Directory) in IndexReader has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[87,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[161,95] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,23] [unchecked] unchecked method invocation: method addExcludeList in class LookupParseUtilitiesRefactor is applied to given types
[ERROR] required: DictionaryEngine,List<Element>
[ERROR] found: DictionaryEngine,List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[174,60] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[205,72] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/LookupParseUtilitiesRefactor.java>:[302,64] [unchecked] unchecked conversion
[ERROR] required: List<Element>
[ERROR] found: List
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/strtable/FieldConstraintImpl.java>:[60,41] [unchecked] unchecked call to compareTo(T) as a member of the raw type Comparable
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in interface Comparable
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[75,75] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[76,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[77,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[78,74] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[80,36] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[133,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/UmlsDictionaryLookupAnnotator.java>:[135,13] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[47,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[48,88] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[49,86] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[50,90] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/lookup/ae/ThreadedUmlsDictionaryLookupAnnotator.java>:[51,31] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class ThreadedUmlsDictionaryLookupAnnotator
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[266,15] [unchecked] unchecked call to put(K,V) as a member of the raw type Map
[ERROR] where K,V are type-variables:
[ERROR] K extends Object declared in interface Map
[ERROR] V extends Object declared in interface Map
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,19] [unchecked] unchecked method invocation: method sort in class Collections is applied to given types
[ERROR] required: List<T>,Comparator<? super T>
[ERROR] found: List,OffsetComparator
[ERROR] where T is a type-variable:
[ERROR] T extends Object declared in method <T>sort(List<T>,Comparator<? super T>)
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup/src/main/java/org/apache/ctakes/dictionary/assertion/CreateAssertionLuceneIndexFromDelimitedFile.java>:[389,20] [unchecked] unchecked conversion
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-dictionary-lookup-fast: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[21,32] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: package org.apache.ctakes.core.ae
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[187,77] error: cannot find symbol
[ERROR] symbol: class UmlsEnvironmentConfiguration
[ERROR] location: class UmlsUserApprover
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/AbstractJCasTermAnnotator.java>:[106,54] [unchecked] unchecked cast
[ERROR] required: Class<? extends Annotation>
[ERROR] found: Class<CAP#1>
[ERROR] where CAP#1 is a fresh type-variable:
[ERROR] CAP#1 extends Object from capture of ?
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[78,79] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[82,78] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[86,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[93,76] error: package UmlsEnvironmentConfiguration does not exist
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[193,59] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsUserApprover
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/util/UmlsUserApprover.java>:[197,59] error: cannot find symbol
[ERROR] symbol: variable UmlsEnvironmentConfiguration
[ERROR] location: class UmlsUserApprover
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/OverlapJCasTermAnnotator.java>:[223,12] [deprecation] DICTIONARY_DESCRIPTOR_KEY in JCasTermAnnotator has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/src/main/java/org/apache/ctakes/dictionary/lookup2/ae/OverlapJCasTermAnnotator.java>:[231,12] [deprecation] DICTIONARY_DESCRIPTOR_KEY in JCasTermAnnotator has been deprecated
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-dictionary-lookup
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #29
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/29/display/redirect?page=changes>
Changes:
[seanfinan] Followup checkin for patient view store
------------------------------------------
[...truncated 1.45 MB...]
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=0ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=1ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4129ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=28ms
[INFO] Sensor JavaSquidSensor (done) | time=4163ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=5ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=1ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=1ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=8ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=62ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1518ms, dir size=18 MB
[INFO] Analysis reports compressed in 2990ms, zip size=7 MB
[INFO] Analysis report uploaded in 2240ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_GzOLhmqiS_xQKKaVL
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:11 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.756 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.982 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.710 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.877 s]
[JENKINS] Archiving disabled
[INFO] Apache cTAKES core ................................. SUCCESS [ 23.779 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.259 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.506 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.329 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 4.068 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.619 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.977 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 16.846 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.402 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.024 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 27.385 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 7.898 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.692 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.532 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.887 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.482 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.205 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.304 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.869 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.515 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.393 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.397 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 20.545 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 37.938 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.336 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.584 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.678 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.210 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:47 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.327 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.774 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.912 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.916 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.418 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 3.105 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.329 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 3.264 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.435 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.654 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.683 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.815 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [01:08 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [01:29 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [01:02 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.100 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.664 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 17:21 min
[INFO] Finished at: 2017-11-16T21:48:02Z
[INFO] Final Memory: 168M/1668M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex-uima
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #28
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/28/display/redirect?page=changes>
Changes:
[seanfinan] Minor refactor (shorter names)
[seanfinan] Rewrite of Patient view cache
------------------------------------------
[...truncated 664.50 KB...]
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=0ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=1ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=5148ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=49ms
[INFO] Sensor JavaSquidSensor (done) | time=5203ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=4ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=6ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=43ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 2080ms, dir size=18 MB
[INFO] Analysis reports compressed in 3659ms, zip size=7 MB
[INFO] Analysis report uploaded in 2270ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV_GjHbZmqiS_xQKKaVK
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:10 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.204 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.557 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.400 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.847 s]
[INFO] Apache cTAKES core ................................. FAILURE [ 4.577 s]
[INFO] ctakes-gui ......................................... SKIPPED
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.285 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SKIPPED
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.376 s]
[INFO] Apache cTAKES chunker .............................. SKIPPED
[INFO] Apache cTAKES document preprocessor ................ SKIPPED
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 14.636 s]
[INFO] Apache cTAKES dictionary lookup .................... SKIPPED
[INFO] Apache cTAKES context dependent tokenizer .......... SKIPPED
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 39.973 s]
[INFO] Apache cTAKES LVG lexical tools .................... SKIPPED
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.474 s]
[INFO] Apache cTAKES named entity contexts ................ SKIPPED
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.964 s]
[INFO] Apache cTAKES Constituency Parser .................. SKIPPED
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.302 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.996 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.550 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.224 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SKIPPED
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.184 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 25.271 s]
[INFO] Apache cTAKES Dependency Parser .................... SKIPPED
[INFO] Apache cTAKES Assertion ............................ SKIPPED
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.379 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SKIPPED
[INFO] Apache cTAKES Relation Extractor ................... SKIPPED
[INFO] Apache cTAKES Temporal Information Extraction ...... SKIPPED
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 3.423 s]
[INFO] Apache cTAKES Drug NER ............................. SKIPPED
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.541 s]
[INFO] Apache cTAKES Side Effects ......................... SKIPPED
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.542 s]
[INFO] Apache cTAKES Smoking Status ....................... SKIPPED
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.622 s]
[INFO] Apache cTAKES Assertion's zoner .................... SKIPPED
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.437 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.417 s]
[INFO] Apache cTAKES YTEX ................................. SKIPPED
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... SKIPPED
[INFO] Apache cTAKES template filler ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 09:03 min
[INFO] Finished at: 2017-11-16T20:37:29Z
[INFO] Final Memory: 107M/1622M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-core: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol
[ERROR] symbol: method addDocument(JCas)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol
[ERROR] symbol: method getPatientIds()
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol
[ERROR] symbol: method getPatientCas(String)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,int)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol
[ERROR] symbol: method setDocCount(String,Integer)
[ERROR] location: class PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-core
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #27
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/27/display/redirect?page=changes>
Changes:
[seanfinan] MarkableHeadTreeCreator removed
------------------------------------------
[...truncated 1.13 MB...]
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4509ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=37ms
[INFO] Sensor JavaSquidSensor (done) | time=4553ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=35ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=1ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1346ms, dir size=18 MB
[INFO] Analysis reports compressed in 3006ms, zip size=7 MB
[INFO] Analysis report uploaded in 2136ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-_7R5MmqiS_xQKKaUw
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:24 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.967 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.985 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.791 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.382 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 21.777 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 16.063 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.223 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.071 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.552 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.545 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.612 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.889 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.908 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.784 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 28.808 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.620 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.996 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.521 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.981 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.540 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.961 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.099 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.537 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.342 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.218 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.144 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.613 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 35.847 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 5.859 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.476 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.460 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 9.370 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:49 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.082 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.883 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.564 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.549 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 5.965 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.554 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.258 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.503 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.008 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.623 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.512 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.420 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [ 17.720 s]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.232 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.349 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 13:51 min
[INFO] Finished at: 2017-11-15T13:45:47Z
[INFO] Final Memory: 139M/1553M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-antrun-plugin:1.6:run (generate-test-config) on project ctakes-ytex: An Ant BuildException has occured: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/build-setup.xml>:149: The following error occurred while executing this line:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/scripts/data/build.xml>:124: java.sql.SQLException: Database lock acquisition failure: lockFile: org.hsqldb.persist.LockFile@72d2ec59[file =/tmp/ctakes-test-hsqldb/ctakes/ctakes.lck, exists=false, locked=false, valid=false, ] method: openRAF reason: java.io.FileNotFoundException: /tmp/ctakes-test-hsqldb/ctakes/ctakes.lck (Permission denied)
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #26
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/26/display/redirect?page=changes>
Changes:
[alexz] CTAKES-334: fix GramMatrixExporterImp::setBagOfWordsExporter signature
[seanfinan] CTAKES-441 : Add LabValueFinder annotator. Many thanks to the original author Kean Kaufmann.
[seanfinan] TextSpan refactor (package move). Prep for LabValueFinder
[alexz] "svn ignore IntelliJ IDEA project files - *.iml, .idea"
------------------------------------------
[...truncated 1.58 MB...]
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=5946ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=41ms
[INFO] Sensor JavaSquidSensor (done) | time=5996ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] SCM provider for this project is: svn
[INFO] 1 files to be analyzed
[INFO] 1/1 files analyzed
[INFO] Sensor SCM Sensor (done) | time=330ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=1ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=8ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=56ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1098 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 2089ms, dir size=18 MB
[INFO] Analysis reports compressed in 4110ms, zip size=7 MB
[INFO] Analysis report uploaded in 2519ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-9bAyomqiS_xQKKaUj
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [06:01 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.807 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.800 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.698 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.358 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 31.254 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.749 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.561 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 6.304 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.529 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.998 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.018 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 25.339 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 5.151 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.465 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 53.239 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 8.980 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.368 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.976 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.051 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.295 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 8.606 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.087 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.653 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 4.262 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.646 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.458 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 20.742 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 50.825 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 7.342 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.427 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 7.521 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.718 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:48 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 10.944 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.619 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 8.485 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.695 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 7.103 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.564 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 7.085 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.545 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.202 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.517 s]
[INFO] ctakes-examples .................................... SUCCESS [ 9.817 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.485 s]
[INFO] Apache cTAKES YTEX ................................. SUCCESS [01:24 min]
[INFO] Apache cTAKES YTEX UIMA ............................ FAILURE [01:52 min]
[INFO] Apache cTAKES YTEX Web ............................. SUCCESS [01:14 min]
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 14.918 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 13.651 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 22:18 min
[INFO] Finished at: 2017-11-15T02:05:39Z
[INFO] Final Memory: 165M/1722M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex-uima: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex-uima/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex-uima
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org alexz@apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #25
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/25/display/redirect?page=changes>
Changes:
[seanfinan] Fix for possible bug involving too many open files. Apparently Files.lines() doesn't auto-close at eos.
------------------------------------------
[...truncated 1.35 MB...]
[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=0ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=1ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=5853ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=44ms
[INFO] Sensor JavaSquidSensor (done) | time=5909ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=4ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=1ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=5ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=47ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1096 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 2079ms, dir size=18 MB
[INFO] Analysis reports compressed in 4031ms, zip size=7 MB
[INFO] Analysis report uploaded in 2597ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-2vTD5mqiS_xQKKaUI
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [06:02 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.902 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.870 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 9.253 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.444 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.823 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.683 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.720 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.820 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.523 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 4.546 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.251 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 21.661 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.962 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.578 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 39.998 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 6.122 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.766 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 5.052 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.918 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.690 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 8.434 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.166 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.711 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 4.347 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.592 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.654 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.185 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 44.957 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 7.023 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.558 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 8.215 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.717 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:11 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 10.652 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.805 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.343 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.782 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 7.336 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.770 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.901 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.823 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.306 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.638 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.822 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.834 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:20 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 13.361 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 9.524 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 17:50 min
[INFO] Finished at: 2017-11-13T18:56:54Z
[INFO] Final Memory: 148M/1645M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #24
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/24/display/redirect?page=changes>
Changes:
[tmill] WIP: Fixes compiler error but coref eval still not working.
------------------------------------------
[...truncated 1.16 MB...]
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=1ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=5329ms
[INFO] 46/46 source files have been analyzed
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=48ms
[INFO] Sensor JavaSquidSensor (done) | time=5384ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=4ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=1ms
[INFO] Sensor SurefireSensor
[INFO] 3/3 source files have been analyzed
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=15ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=1ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=1ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=37ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1096 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1835ms, dir size=18 MB
[INFO] Analysis reports compressed in 3278ms, zip size=7 MB
[INFO] Analysis report uploaded in 2152ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-iGFfRmqiS_xQKKaSs
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[JENKINS] Archiving disabled[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:08 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.471 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.721 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.203 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.717 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 26.122 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.629 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.243 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.457 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.364 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.631 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 5.620 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 12.226 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.478 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.039 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 32.477 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 9.344 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.403 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 5.133 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.549 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.300 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 10.436 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.973 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.504 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.466 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.409 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.277 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 23.178 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 46.254 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.625 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.375 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.889 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.744 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:14 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.636 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.529 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.871 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.558 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.318 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.627 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.299 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.523 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.032 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.448 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.779 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.714 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:15 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.811 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.584 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 16:25 min
[INFO] Finished at: 2017-11-09T18:44:26Z
[INFO] Final Memory: 160M/1672M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #23
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/23/display/redirect?page=changes>
Changes:
[seanfinan] FileTreeReader : Allow specification of a single file
------------------------------------------
[...truncated 1.16 MB...]
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=5340ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=32ms
[INFO] Sensor JavaSquidSensor (done) | time=5379ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=1ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=40ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=1ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1096 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1590ms, dir size=18 MB
[INFO] Analysis reports compressed in 3340ms, zip size=7 MB
[INFO] Analysis report uploaded in 2553ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-hqw9kmqiS_xQKKaSq
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:21 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.554 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.910 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 9.007 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.831 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.689 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.901 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.282 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.974 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.360 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.821 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.874 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 11.570 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 5.395 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.348 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 38.442 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.921 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.407 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.985 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.840 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.446 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.310 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.947 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.674 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.246 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.562 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.300 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 25.709 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 49.406 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 7.214 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.500 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 7.085 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.556 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:25 min]
[INFO] Apache cTAKES CoReference Resolver ................. FAILURE [ 7.938 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.555 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.222 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.488 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.434 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.575 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.307 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.579 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.135 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.707 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.426 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:20 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.913 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 8.130 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 16:49 min
[INFO] Finished at: 2017-11-09T16:45:00Z
[INFO] Final Memory: 157M/1694M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #22
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/22/display/redirect?page=changes>
Changes:
[tmill] Removed unused and non-existent type.
------------------------------------------
[...truncated 1.16 MB...]
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4663ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=25ms
[INFO] Sensor JavaSquidSensor (done) | time=4694ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=1ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=37ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1096 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1568ms, dir size=18 MB
[INFO] Analysis reports compressed in 3033ms, zip size=7 MB
[INFO] Analysis report uploaded in 2259ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-cuoVqYke4JYq6HJrf
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:44 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.632 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.685 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.318 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.505 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.343 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 18.437 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.260 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.351 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.394 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.597 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.852 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.113 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 5.299 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 6.024 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 29.724 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 5.171 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.531 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.816 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.932 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.858 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.970 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.168 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.727 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.748 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.633 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.319 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 25.597 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 43.597 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.545 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.554 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.948 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.235 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:01 min]
[INFO] Apache cTAKES CoReference Resolver ................. FAILURE [ 6.965 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.903 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.306 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.787 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.383 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.652 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.642 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.760 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.110 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.572 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.533 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:10 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.214 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.421 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 15:31 min
[INFO] Finished at: 2017-11-08T17:43:51Z
[INFO] Final Memory: 153M/1690M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #21
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/21/display/redirect?page=changes>
Changes:
[tmill] New patient collector model working for coreference evaluation.
------------------------------------------
[...truncated 1.17 MB...]
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4520ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=40ms
[INFO] Sensor JavaSquidSensor (done) | time=4566ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=5ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=1ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=8ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=38ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1096 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1697ms, dir size=18 MB
[INFO] Analysis reports compressed in 2989ms, zip size=7 MB
[INFO] Analysis report uploaded in 2214ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-ci-2FYke4JYq6HJrb
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:43 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.372 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.807 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 10.562 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.684 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 22.170 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.346 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.019 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 4.742 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.090 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.515 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.849 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.583 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.075 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.675 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 43.401 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 6.554 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.525 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.959 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.488 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.411 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.535 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.209 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 3.319 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 4.428 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 4.015 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.471 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 39.864 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 37.335 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 7.280 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.517 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.696 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.510 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:31 min]
[INFO] Apache cTAKES CoReference Resolver ................. FAILURE [ 26.652 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 29.686 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 28.969 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.600 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.259 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.692 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.505 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 14.870 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 15.175 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.489 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.634 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:23 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 23.471 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 18.148 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 19:59 min
[INFO] Finished at: 2017-11-08T16:53:30Z
[INFO] Final Memory: 153M/1663M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure:
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/ae/features/cluster/MentionClusterUMLSFeatureExtractor.java>:[14,41] error: cannot find symbol
[ERROR] symbol: class HashableMarkable
[ERROR] location: package org.apache.ctakes.coreference.util
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol
[ERROR] symbol: method getPreviousPatientName()
[ERROR] location: variable notes of type PatientNoteStore
[ERROR] <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-coreference
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org timothy.miller@childrens.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #20
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/20/display/redirect?page=changes>
Changes:
[seanfinan] Add logging to common temporal engines
[seanfinan] Ignore empty lines in Bsv custom dictionaries
[seanfinan] Core collection reader updates (refactor)
[seanfinan] Core Cas consumer updates, mostly for HtmlWriter
------------------------------------------
[...truncated 1.16 MB...]
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4948ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=29ms
[INFO] Sensor JavaSquidSensor (done) | time=4983ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] SCM provider for this project is: svn
[INFO] 2 files to be analyzed
[INFO] 2/2 files analyzed
[INFO] Sensor SCM Sensor (done) | time=475ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=1ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=1ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=6ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=38ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=1ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1097 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1546ms, dir size=18 MB
[INFO] Analysis reports compressed in 3052ms, zip size=7 MB
[INFO] Analysis report uploaded in 2222ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV-cTlcuYke4JYq6HJrZ
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:50 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.959 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.756 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.620 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.068 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 38.324 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.537 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.386 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.554 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.304 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.688 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.293 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 18.802 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.451 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.028 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 34.691 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 6.884 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.651 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.523 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.112 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.388 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.863 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.246 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.654 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.481 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.438 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.257 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 23.825 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 42.759 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.197 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.533 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 20.036 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 9.982 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:02 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.277 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 17.900 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.957 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.626 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.790 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.929 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.160 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.717 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.351 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.654 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.319 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.605 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:10 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.248 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.444 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 16:32 min
[INFO] Finished at: 2017-11-08T15:45:41Z
[INFO] Final Memory: 157M/1656M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org sean.finan@tch.harvard.edu
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #19
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/19/display/redirect?page=changes>
Changes:
[alexz] CTAKES-465: fix deprecated FileLocator.getFullPath
------------------------------------------
[...truncated 1.15 MB...]
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=0ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=1ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=5543ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=25ms
[INFO] Sensor JavaSquidSensor (done) | time=5574ms
[INFO] Sensor SCM Sensor
[INFO] SCM provider for this project is: svn
[INFO] 1 files to be analyzed
[INFO] 3/3 source files have been analyzed
[INFO] 1/1 files analyzed
[INFO] Sensor SCM Sensor (done) | time=489ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=6ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=61ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=1ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1095 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1816ms, dir size=18 MB
[INFO] Analysis reports compressed in 3611ms, zip size=7 MB
[INFO] Analysis report uploaded in 2482ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV9v9M_QiuI1oxQxO_wN
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:23 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.557 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.656 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 6.999 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.956 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 22.696 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.181 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.287 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 4.987 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.367 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.433 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.724 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.454 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 5.948 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.173 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 26.089 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.879 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 3.551 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.444 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.050 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.269 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.042 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.042 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.536 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.254 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.223 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.409 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 20.788 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 37.054 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.399 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.381 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.318 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 9.783 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [15:12 min]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.530 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.878 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.483 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.285 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.559 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.717 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.458 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.046 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.476 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.388 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:20 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.699 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.782 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 28:39 min
[INFO] Finished at: 2017-10-31T01:04:32Z
[INFO] Final Memory: 144M/1650M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Failure or timeout -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #18
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/18/display/redirect?page=changes>
Changes:
[alexz] CTAKES-463: update deprecated FileLocator.locateFile with FileLocator.getFile
------------------------------------------
[...truncated 1.17 MB...]
[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=0ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4933ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=28ms
[INFO] Sensor JavaSquidSensor (done) | time=4970ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=1ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=51ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1095 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1693ms, dir size=18 MB
[INFO] Analysis reports compressed in 3227ms, zip size=7 MB
[INFO] Analysis report uploaded in 2135ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV9rKaLyiuI1oxQxO_v0
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:59 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.662 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.621 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.686 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.074 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 23.962 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.827 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.175 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.341 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.194 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.843 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.749 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.983 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.607 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.816 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 32.048 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 7.877 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.402 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.460 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.809 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.185 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.926 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.864 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.449 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.108 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.629 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.460 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 21.886 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 43.379 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.511 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.363 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.738 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.668 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:12 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.521 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.474 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.059 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.692 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.464 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.481 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.335 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.540 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 2.989 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.466 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.974 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.475 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:17 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.032 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.777 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 15:53 min
[INFO] Finished at: 2017-10-30T02:44:09Z
[INFO] Final Memory: 153M/1658M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #17
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/17/display/redirect?page=changes>
Changes:
[seanfinan] Keep lookup fast-res in distributable
[seanfinan] include piper files
[seanfinan] uimaj-tools is needed for the uima cpe and cvd gui profiles
------------------------------------------
[...truncated 1.20 MB...]
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=1ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=6168ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=29ms
[INFO] Sensor JavaSquidSensor (done) | time=6230ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] 3/3 source files have been analyzed
[INFO] Sensor Coverage Report Import (done) | time=3ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=1ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=41ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=1ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1095 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1994ms, dir size=18 MB
[INFO] Analysis reports compressed in 3908ms, zip size=7 MB
[INFO] Analysis report uploaded in 2689ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV9YYgMZiuI1oxQxO_uW
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [06:28 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.940 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.897 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 9.777 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 5.191 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 38.110 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 5.049 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.421 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 6.296 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.470 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.743 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.333 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 31.416 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 6.740 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.650 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 57.283 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 48.011 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 29.259 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.995 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.599 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.934 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 45.912 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 45.202 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 33.903 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 46.372 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 47.656 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 43.874 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [01:15 min]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [01:21 min]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 28.575 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.959 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 40.239 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 26.069 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [03:03 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 22.173 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.757 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 20.721 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.820 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.831 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 16.112 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.854 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.643 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.354 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 15.632 s]
[INFO] ctakes-examples .................................... SUCCESS [ 10.041 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 3.222 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:33 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.919 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 8.909 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 32:40 min
[INFO] Finished at: 2017-10-26T11:13:11Z
[JENKINS] Archiving disabled
[INFO] Final Memory: 159M/1672M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #16
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/16/display/redirect?page=changes>
Changes:
[seanfinan] Allow comma-separated semantic group codes in blacklist files.
[seanfinan] Change from deprecated FileLocator.locateFile(..) to getFile(..)
Remove use of deprecated getCasInitializer()
[seanfinan] CTAKES-470 : throw exception (and exit) if piper cannot be loaded. Exceptions saved to log file.
------------------------------------------
[...truncated 1.23 MB...]
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=2ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=1ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=5321ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=31ms
[INFO] Sensor JavaSquidSensor (done) | time=5361ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] SCM provider for this project is: svn
[INFO] 1 files to be analyzed
[INFO] 1/1 files analyzed
[INFO] Sensor SCM Sensor (done) | time=385ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=1ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=37ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1095 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1537ms, dir size=18 MB
[INFO] Analysis reports compressed in 3331ms, zip size=7 MB
[INFO] Analysis report uploaded in 2516ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV9UkK8iiuI1oxQxO_uV
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [05:27 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [01:21 min]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 31.716 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [01:18 min]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 42.383 s]
[INFO] Apache cTAKES core ................................. SUCCESS [04:37 min]
[INFO] ctakes-gui ......................................... SUCCESS [01:00 min]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [01:05 min]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [01:06 min]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [01:02 min]
[INFO] Apache cTAKES chunker .............................. SUCCESS [01:18 min]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [01:35 min]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [01:21 min]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [01:38 min]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [01:31 min]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [02:28 min]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 24.022 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.879 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 15.925 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.863 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.790 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 15.404 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.212 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 3.186 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 4.447 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 15.289 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.192 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 20.509 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 38.110 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.139 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.530 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.801 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 9.541 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [15:25 min]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 20.107 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 46.794 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 31.129 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 52.067 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.664 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.534 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.689 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.269 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.448 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.397 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:18 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 23.102 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.702 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 01:12 h
[INFO] Finished at: 2017-10-25T17:31:23Z
[INFO] Final Memory: 154M/1636M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Failure or timeout -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #15
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/15/display/redirect?page=changes>
Changes:
[seanfinan] Set document count in patient note store
[seanfinan] patient store, etc. use total doc count instead of previous/next
------------------------------------------
[...truncated 780.80 KB...]
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
24 Oct 2017 20:17:37 INFO LvgAnnotator - URL for lvg.properties =file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
24 Oct 2017 20:17:39 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
24 Oct 2017 20:17:39 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
24 Oct 2017 20:17:39 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
24 Oct 2017 20:17:39 INFO LvgCmdApiResourceImpl - config file absolute path = <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-temporal/jar>:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
24 Oct 2017 20:17:39 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-temporal>
24 Oct 2017 20:17:39 INFO LvgCmdApiResourceImpl - cd jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/
** Configuration Error: jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties (No such file or directory)
** Error: problem of opening/reading config file: 'jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties'. Use -x option to specify the config file path.
** Configuration Error: jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties (No such file or directory)
** Error: problem of opening/reading config file: 'jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties'. Use -x option to specify the config file path.
24 Oct 2017 20:17:39 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-temporal>
24 Oct 2017 20:17:39 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
24 Oct 2017 20:17:39 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
24 Oct 2017 20:17:58 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
24 Oct 2017 20:18:00 INFO SentenceDetector - Starting processing.
24 Oct 2017 20:18:00 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
24 Oct 2017 20:18:00 INFO LvgAnnotator - process(JCas)
24 Oct 2017 20:18:00 INFO ContextDependentTokenizerAnnotator - process(JCas)
24 Oct 2017 20:18:00 INFO POSTagger - process(JCas)
24 Oct 2017 20:18:00 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
24 Oct 2017 20:18:00 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
24 Oct 2017 20:18:01 INFO EventTimeRelationAnnotatorTest - Relation: RelationArgument
id: 0
argument: TimeMention
sofa: _InitialView
begin: 58
end: 66
id: 0
ontologyConceptArr: <null>
typeID: 0
segmentID: <null>
sentenceID: <null>
discoveryTechnique: 0
confidence: 0.0
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
date: <null>
time: <null>
timeClass: "DATE"
role: "Arg1"
participatesIn: <null>
RelationArgument
id: 0
argument: EventMention
sofa: _InitialView
begin: 67
end: 76
id: 0
ontologyConceptArr: <null>
typeID: 0
segmentID: <null>
sentenceID: <null>
discoveryTechnique: 0
confidence: 1.3807402
polarity: 0
uncertainty: 0
conditional: false
generic: false
subject: <null>
historyOf: 0
originalText: <null>
event: Event
id: 0
ontologyConcept: <null>
mentions: <null>
discoveryTechnique: 0
confidence: 0.0
conditional: false
generic: false
subject: <null>
polarity: 0
uncertainty: 0
historyOf: 0
properties: EventProperties
contextualModality: <null>
contextualAspect: <null>
permanence: <null>
category: <null>
aspect: <null>
docTimeRel: <null>
degree: <null>
polarity: 0
role: "Arg2"
participatesIn: <null>
Category: CONTAINS
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 26.761 sec
Running org.apache.ctakes.temporal.ae.EventEventRelationAnnotatorTest
24 Oct 2017 20:18:01 INFO LvgAnnotator - URL for lvg.properties =file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
24 Oct 2017 20:18:02 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
24 Oct 2017 20:18:02 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
24 Oct 2017 20:18:02 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
24 Oct 2017 20:18:02 INFO LvgCmdApiResourceImpl - config file absolute path = <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-temporal/jar>:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
24 Oct 2017 20:18:02 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-temporal>
24 Oct 2017 20:18:02 INFO LvgCmdApiResourceImpl - cd jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/
** Configuration Error: jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties (No such file or directory)
** Error: problem of opening/reading config file: 'jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties'. Use -x option to specify the config file path.
** Configuration Error: jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties (No such file or directory)
** Error: problem of opening/reading config file: 'jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties'. Use -x option to specify the config file path.
24 Oct 2017 20:18:02 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-temporal>
24 Oct 2017 20:18:02 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
24 Oct 2017 20:18:02 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
24 Oct 2017 20:18:16 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
24 Oct 2017 20:18:19 INFO SentenceDetector - Starting processing.
24 Oct 2017 20:18:19 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
24 Oct 2017 20:18:19 INFO LvgAnnotator - process(JCas)
24 Oct 2017 20:18:19 INFO ContextDependentTokenizerAnnotator - process(JCas)
24 Oct 2017 20:18:19 INFO POSTagger - process(JCas)
24 Oct 2017 20:18:19 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main
24 Oct 2017 20:18:19 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 18.495 sec
Running org.apache.ctakes.temporal.ae.ContextualModalityAnnotatorTest
24 Oct 2017 20:18:19 INFO LvgAnnotator - URL for lvg.properties =file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
24 Oct 2017 20:18:21 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
24 Oct 2017 20:18:21 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
24 Oct 2017 20:18:21 INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file = jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
24 Oct 2017 20:18:21 INFO LvgCmdApiResourceImpl - config file absolute path = <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-temporal/jar>:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
24 Oct 2017 20:18:21 INFO LvgCmdApiResourceImpl - cwd = <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-temporal>
24 Oct 2017 20:18:21 INFO LvgCmdApiResourceImpl - cd jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/
** Configuration Error: jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties (No such file or directory)
** Error: problem of opening/reading config file: 'jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties'. Use -x option to specify the config file path.
** Configuration Error: jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties (No such file or directory)
** Error: problem of opening/reading config file: 'jar:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties'. Use -x option to specify the config file path.
24 Oct 2017 20:18:21 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-temporal>
24 Oct 2017 20:18:21 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
24 Oct 2017 20:18:21 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
Loading configuration.
Loading feature templates.
Loading lexica.
Loading model:
........................................................................................
24 Oct 2017 20:24:01 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true
Results :
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: ubuntu-us1 is offline; cannot locate JDK 1.8 (latest)
ERROR: ubuntu-us1 is offline; cannot locate Maven 3.5.0
ERROR: Failed to parse POMs
java.io.IOException: Backing channel 'ubuntu-us1' is disconnected.
at hudson.remoting.RemoteInvocationHandler.channelOrFail(RemoteInvocationHandler.java:192)
at hudson.remoting.RemoteInvocationHandler.invoke(RemoteInvocationHandler.java:257)
at com.sun.proxy.$Proxy129.isAlive(Unknown Source)
at hudson.Launcher$RemoteLauncher$ProcImpl.isAlive(Launcher.java:1138)
at hudson.maven.ProcessCache$MavenProcess.call(ProcessCache.java:166)
at hudson.maven.MavenModuleSetBuild$MavenModuleSetBuildExecution.doRun(MavenModuleSetBuild.java:879)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:496)
at hudson.model.Run.execute(Run.java:1737)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:419)
Caused by: hudson.remoting.Channel$OrderlyShutdown
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1138)
at hudson.remoting.Channel$1.handle(Channel.java:535)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:83)
Caused by: Command close created at
at hudson.remoting.Command.<init>(Command.java:60)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1132)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1130)
at hudson.remoting.Channel.close(Channel.java:1290)
at hudson.remoting.Channel.close(Channel.java:1272)
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1137)
... 2 more
FATAL: channel is already closed
Command close created at
at hudson.remoting.Command.<init>(Command.java:60)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1132)
at hudson.remoting.Channel$CloseCommand.<init>(Channel.java:1130)
at hudson.remoting.Channel.close(Channel.java:1290)
at hudson.remoting.Channel.close(Channel.java:1272)
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1137)
Caused: hudson.remoting.Channel$OrderlyShutdown
at hudson.remoting.Channel$CloseCommand.execute(Channel.java:1138)
at hudson.remoting.Channel$1.handle(Channel.java:535)
at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:83)
Caused: hudson.remoting.ChannelClosedException: channel is already closed
at hudson.remoting.Channel.send(Channel.java:613)
at hudson.remoting.Request.call(Request.java:130)
at hudson.remoting.Channel.call(Channel.java:838)
at hudson.Launcher$RemoteLauncher.kill(Launcher.java:1079)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:502)
at hudson.model.Run.execute(Run.java:1737)
at hudson.maven.MavenModuleSetBuild.run(MavenModuleSetBuild.java:543)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:419)
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #14
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/14/display/redirect?page=changes>
Changes:
[seanfinan] Add patient identifier get()
[seanfinan] Add text patientIdentifier to metadata type
------------------------------------------
[...truncated 1.18 MB...]
[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=0ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=0ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4155ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=25ms
[INFO] Sensor JavaSquidSensor (done) | time=4186ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=3ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=1ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=3ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=35ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1095 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1352ms, dir size=18 MB
[INFO] Analysis reports compressed in 2933ms, zip size=7 MB
[INFO] Analysis report uploaded in 2774ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV9Mr7eriuI1oxQxO_tZ
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:17 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [01:17 min]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [02:15 min]
[INFO] Apache cTAKES common type system ................... SUCCESS [03:12 min]
[INFO] Apache cTAKES utils ................................ SUCCESS [01:21 min]
[INFO] Apache cTAKES core ................................. SUCCESS [05:11 min]
[INFO] ctakes-gui ......................................... SUCCESS [ 58.874 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 53.777 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [01:35 min]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [02:34 min]
[INFO] Apache cTAKES chunker .............................. SUCCESS [01:26 min]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [01:15 min]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [01:14 min]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.854 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 14.605 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 23.995 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 15.257 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.708 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.344 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.065 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.362 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.182 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.168 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.663 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.371 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.237 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.564 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 36.873 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 35.899 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 16.440 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 3.223 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 7.072 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 9.871 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [01:56 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 15.314 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.423 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.489 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.465 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 17.619 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.612 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.127 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.433 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 2.938 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.717 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.661 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.617 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:02 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 10.705 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.368 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 48:25 min
[INFO] Finished at: 2017-10-24T04:42:36Z
[INFO] Final Memory: 158M/1643M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #13
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/13/display/redirect?page=changes>
Changes:
[tmill] Added some debugging statements for cross-document coref.
------------------------------------------
[...truncated 1.18 MB...]
[INFO] ------------- Scan Apache cTAKES dictionary lookup fast
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/sonar>
[INFO] Source paths: pom.xml, src/main/java
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=1ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=1ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=1ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=4676ms
[INFO] Java Test Files AST scan
[INFO] 3 source files to be analyzed
[INFO] 46/46 source files have been analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=28ms
[INFO] Sensor JavaSquidSensor (done) | time=4711ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] Sensor SCM Sensor (done) | time=4ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=0ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=1ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=36ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1095 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1403ms, dir size=18 MB
[INFO] Analysis reports compressed in 2776ms, zip size=7 MB
[INFO] Analysis report uploaded in 2110ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV8scC3fiuI1oxQxO_rO
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [04:36 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 5.048 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 13.638 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.223 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.677 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 32.015 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.225 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 4.270 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.279 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.241 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.578 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.293 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 18.945 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.515 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.069 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 44.138 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.728 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 6.217 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.742 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.015 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.273 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.847 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.053 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.502 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.410 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 4.561 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 5.270 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 25.140 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 42.494 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 11.627 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.466 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.570 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.252 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:12 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 11.217 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.592 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.460 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.468 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.060 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.705 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 5.955 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.717 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 2.951 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.389 s]
[INFO] ctakes-examples .................................... SUCCESS [ 9.314 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.481 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:16 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.056 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.137 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 16:29 min
[INFO] Finished at: 2017-10-17T22:25:08Z
[INFO] Final Memory: 158M/1667M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #12
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/12/display/redirect>
------------------------------------------
[...truncated 1.20 MB...]
[INFO] Test paths: src/test/java
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 49 files indexed
[INFO] Quality profile for java: Sonar way
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor JavaSquidSensor
[INFO] Configured Java source version (sonar.java.source): 8
[INFO] JavaClasspath initialization
[INFO] JavaClasspath initialization (done) | time=0ms
[INFO] JavaTestClasspath initialization
[INFO] JavaTestClasspath initialization (done) | time=1ms
[INFO] Java Main Files AST scan
[INFO] 46 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Main Files AST scan (done) | time=5282ms
[INFO] Java Test Files AST scan
[INFO] 46/46 source files have been analyzed
[INFO] 3 source files to be analyzed
[WARNING] Class not found: jdk.nashorn.internal.ir.annotations.Immutable
[INFO] Java Test Files AST scan (done) | time=26ms
[INFO] Sensor JavaSquidSensor (done) | time=5314ms
[INFO] Sensor SCM Sensor
[INFO] 3/3 source files have been analyzed
[INFO] SCM provider for this project is: svn
[INFO] 49 files to be analyzed
[INFO] 49/49 files analyzed
[INFO] Sensor SCM Sensor (done) | time=7339ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor SurefireSensor
[INFO] parsing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/surefire-reports>
[INFO] Sensor SurefireSensor (done) | time=1ms
[INFO] Sensor JaCoCoSensor
[INFO] JaCoCoSensor: JaCoCo report not found : <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco.exec>
[INFO] Sensor JaCoCoSensor (done) | time=0ms
[INFO] Sensor JaCoCoItSensor
[INFO] JaCoCoItSensor: JaCoCo IT report not found: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast/target/jacoco-it.exec>
[INFO] Sensor JaCoCoItSensor (done) | time=0ms
[INFO] Sensor JaCoCoOverallSensor
[INFO] Sensor JaCoCoOverallSensor (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=4ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=1ms
[INFO] Sensor CPD Block Indexer
[INFO] JavaCpdBlockIndexer is used for java
[INFO] Sensor CPD Block Indexer (done) | time=45ms
[INFO] ------------- Scan Apache cTAKES Resources dictionary-lookup-fast-res
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-dictionary-lookup-fast-res/target/sonar>
[INFO] Source paths: pom.xml
[INFO] Binary dirs: target/classes
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Index files
[INFO] 0 files indexed
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] ------------- Scan Apache cTAKES
[INFO] Base dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/>
[INFO] Working dir: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/target/sonar>
[INFO] Source encoding: UTF-8, default locale: en_US
[INFO] Sensor Lines Sensor
[INFO] Sensor Lines Sensor (done) | time=0ms
[INFO] Sensor SCM Sensor
[INFO] Sensor SCM Sensor (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Coverage Report Import
[INFO] Sensor Coverage Report Import (done) | time=0ms
[INFO] Sensor Unit Test Results Import
[INFO] Sensor Unit Test Results Import (done) | time=0ms
[INFO] Sensor XmlFileSensor
[INFO] Sensor XmlFileSensor (done) | time=0ms
[INFO] Sensor Zero Coverage Sensor
[INFO] Sensor Zero Coverage Sensor (done) | time=0ms
[INFO] Sensor Code Colorizer Sensor
[INFO] Sensor Code Colorizer Sensor (done) | time=0ms
[INFO] Sensor CPD Block Indexer
[INFO] Sensor CPD Block Indexer (done) | time=0ms
[INFO] Calculating CPD for 1095 files
[INFO] CPD calculation finished
[INFO] Analysis report generated in 1860ms, dir size=18 MB
[INFO] Analysis reports compressed in 3426ms, zip size=7 MB
[INFO] Analysis report uploaded in 3328ms
[INFO] ANALYSIS SUCCESSFUL, you can browse https://builds.apache.org/analysis/dashboard/index/org.apache.ctakes:ctakes
[INFO] Note that you will be able to access the updated dashboard once the server has processed the submitted analysis report
[INFO] More about the report processing at https://builds.apache.org/analysis/api/ce/task?id=AV7-Hcb2iuI1oxQxO_oS
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [08:59 min]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.548 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.614 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.094 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.190 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 24.700 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 5.052 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.174 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.373 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.311 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.728 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.364 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 12.200 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.465 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.153 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 31.917 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 6.740 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.376 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.384 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.278 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.182 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.826 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.993 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.458 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.162 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.381 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.495 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 23.971 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 45.477 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.373 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.452 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.865 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.828 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:14 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.511 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.462 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.069 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.611 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.391 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.521 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.374 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.508 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.017 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.412 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.919 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.437 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:13 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.708 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.599 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 19:56 min
[INFO] Finished at: 2017-10-08T22:32:35Z
[INFO] Final Memory: 154M/1666M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #11
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/11/display/redirect?page=changes>
Changes:
[james-masanz] remove outdated URL reference
------------------------------------------
[...truncated 1008.86 KB...]
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
05 Oct 2017 14:53:21 INFO RegressionPipelineTest - Creating directory: testdata/generatedoutput/RegressionPipelineCPETest
05 Oct 2017 14:53:21 INFO RegressionPipelineTest - Parsing CPE Descriptor:RegressionPipelineCPETest.xml
05 Oct 2017 14:53:22 INFO Chunker - Chunker model file: org/apache/ctakes/chunker/models/chunker-model.zip
05 Oct 2017 14:53:25 INFO ContextAnnotator - Using left , right scope sizes: 7 , 7
05 Oct 2017 14:53:25 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
05 Oct 2017 14:53:25 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
05 Oct 2017 14:53:25 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.negation.NegationContextAnalyzer
05 Oct 2017 14:53:25 INFO NegationContextAnalyzer - initBoundaryData() called for ContextInitializer
05 Oct 2017 14:53:25 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.negation.NegationContextHitConsumer
05 Oct 2017 14:53:25 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
05 Oct 2017 14:53:25 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
05 Oct 2017 14:53:25 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
05 Oct 2017 14:53:25 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
05 Oct 2017 14:53:25 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
05 Oct 2017 14:53:25 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
05 Oct 2017 14:53:26 INFO ContextAnnotator - Using left , right scope sizes: 10 , 10
05 Oct 2017 14:53:26 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
05 Oct 2017 14:53:26 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
05 Oct 2017 14:53:26 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.status.StatusContextAnalyzer
05 Oct 2017 14:53:26 INFO StatusContextAnalyzer - initBoundaryData() called for ContextInitializer
05 Oct 2017 14:53:26 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.status.StatusContextHitConsumer
05 Oct 2017 14:53:26 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
05 Oct 2017 14:53:26 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
05 Oct 2017 14:53:26 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
05 Oct 2017 14:53:26 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
05 Oct 2017 14:53:26 INFO AbstractJCasTermAnnotator - Using dictionary lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
05 Oct 2017 14:53:26 INFO AbstractJCasTermAnnotator - Exclusion tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS WRB
05 Oct 2017 14:53:26 INFO AbstractJCasTermAnnotator - Using minimum term text span: 3
05 Oct 2017 14:53:26 INFO AbstractJCasTermAnnotator - Using Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml
05 Oct 2017 14:53:26 INFO DictionaryDescriptorParser - Parsing dictionary specifications:
05 Oct 2017 14:53:26 ERROR UmlsUserApprover - User CHANGE_ME not allowed. It is a placeholder reminder.
05 Oct 2017 14:53:26 ERROR UmlsUserApprover - Verify that you are setting command-line option --user or ctakes property umlsUser or environment variable ctakes.umlsuser properly.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 5.647 sec <<< FAILURE!
Results :
Tests in error:
testCPE(org.apache.ctakes.regression.test.RegressionPipelineTest): Initialization of CAS Processor with name "RegressionPipelineAggregateTest" failed.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES template filler 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-template-filler ---
[INFO] Compiling 1 source file to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/classes>
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-template-filler ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-template-filler ---
[INFO] Surefire report directory: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-template-filler ---
[INFO] Building jar: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar>
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-template-filler ---
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.jar
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.pom
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 6.792 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.671 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.587 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 8.733 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.120 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.241 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.979 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.351 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.256 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.331 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.480 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.970 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 11.225 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.543 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.916 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 34.668 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 7.071 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.399 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.902 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.260 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.266 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.509 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 3.118 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.441 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.117 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.361 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.552 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 25.186 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 44.211 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.809 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.662 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.608 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.424 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... FAILURE [15:12 min]
[INFO] Apache cTAKES CoReference Resolver ................. SKIPPED
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.813 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 8.189 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 3.201 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 7.461 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 3.460 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 7.597 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.868 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.412 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.760 s]
[INFO] ctakes-examples .................................... SKIPPED
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.827 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:38 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 14.619 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 9.032 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 24:16 min
[INFO] Finished at: 2017-10-05T14:54:16Z
[INFO] Final Memory: 123M/1519M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-temporal: Failure or timeout -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 2]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] [Help 2] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-temporal
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #10
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/10/display/redirect?page=changes>
Changes:
[tmill] Remove debugging statement that is way too verbose.
------------------------------------------
[...truncated 1.01 MB...]
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
03 Oct 2017 15:38:41 INFO RegressionPipelineTest - Creating directory: testdata/generatedoutput/RegressionPipelineCPETest
03 Oct 2017 15:38:41 INFO RegressionPipelineTest - Parsing CPE Descriptor:RegressionPipelineCPETest.xml
03 Oct 2017 15:38:42 INFO Chunker - Chunker model file: org/apache/ctakes/chunker/models/chunker-model.zip
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using left , right scope sizes: 7 , 7
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
03 Oct 2017 15:38:45 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.negation.NegationContextAnalyzer
03 Oct 2017 15:38:45 INFO NegationContextAnalyzer - initBoundaryData() called for ContextInitializer
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.negation.NegationContextHitConsumer
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
03 Oct 2017 15:38:45 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
03 Oct 2017 15:38:45 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
03 Oct 2017 15:38:45 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using left , right scope sizes: 10 , 10
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
03 Oct 2017 15:38:45 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.status.StatusContextAnalyzer
03 Oct 2017 15:38:45 INFO StatusContextAnalyzer - initBoundaryData() called for ContextInitializer
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.status.StatusContextHitConsumer
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
03 Oct 2017 15:38:45 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
03 Oct 2017 15:38:45 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
03 Oct 2017 15:38:45 INFO AbstractJCasTermAnnotator - Using dictionary lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
03 Oct 2017 15:38:45 INFO AbstractJCasTermAnnotator - Exclusion tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS WRB
03 Oct 2017 15:38:45 INFO AbstractJCasTermAnnotator - Using minimum term text span: 3
03 Oct 2017 15:38:45 INFO AbstractJCasTermAnnotator - Using Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml
03 Oct 2017 15:38:45 INFO DictionaryDescriptorParser - Parsing dictionary specifications:
03 Oct 2017 15:38:45 ERROR UmlsUserApprover - User CHANGE_ME not allowed. It is a placeholder reminder.
03 Oct 2017 15:38:45 ERROR UmlsUserApprover - Verify that you are setting command-line option --user or ctakes property umlsUser or environment variable ctakes.umlsuser properly.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 4.585 sec <<< FAILURE!
Results :
Tests in error:
testCPE(org.apache.ctakes.regression.test.RegressionPipelineTest): Initialization of CAS Processor with name "RegressionPipelineAggregateTest" failed.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES template filler 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-template-filler ---
[INFO] Compiling 1 source file to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/classes>
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-template-filler ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-template-filler ---
[INFO] Surefire report directory: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-template-filler ---
[INFO] Building jar: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar>
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-template-filler ---
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/0/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.jar
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/0/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.pom
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 9.114 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.785 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.628 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 9.613 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.981 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 37.795 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 5.418 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.219 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.772 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.304 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 4.923 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.457 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 12.023 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.495 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.090 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 30.690 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 5.434 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.355 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.727 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.120 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.258 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.066 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.948 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.549 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.162 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.297 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.318 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.653 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 47.999 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.630 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.375 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 7.346 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.907 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:19 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.762 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.543 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.265 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.650 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.687 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.557 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.596 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.598 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.020 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.434 s]
[INFO] ctakes-examples .................................... SUCCESS [ 9.209 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.437 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:19 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 12.216 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.893 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 11:28 min
[INFO] Finished at: 2017-10-03T15:39:32Z
[INFO] Final Memory: 122M/1570M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #9
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/9/display/redirect?page=changes>
Changes:
[seanfinan] ConstituencyParser add dot logging since initialization can take several seconds
TreeUtils added getTerminals(..) that accepts BaseTokens
MaxEntParserWrapper use uimafit index map instead of double select for speed
MarkableSalienceAnnotator added start, finish logging
MentionCluster.. added start, finish logging; still waiting on notYetProcess(jCas)
------------------------------------------
[...truncated 1.05 MB...]
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
02 Oct 2017 21:38:47 INFO RegressionPipelineTest - Creating directory: testdata/generatedoutput/RegressionPipelineCPETest
02 Oct 2017 21:38:47 INFO RegressionPipelineTest - Parsing CPE Descriptor:RegressionPipelineCPETest.xml
02 Oct 2017 21:38:48 INFO Chunker - Chunker model file: org/apache/ctakes/chunker/models/chunker-model.zip
02 Oct 2017 21:38:50 INFO ContextAnnotator - Using left , right scope sizes: 7 , 7
02 Oct 2017 21:38:50 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
02 Oct 2017 21:38:50 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
02 Oct 2017 21:38:50 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.negation.NegationContextAnalyzer
02 Oct 2017 21:38:50 INFO NegationContextAnalyzer - initBoundaryData() called for ContextInitializer
02 Oct 2017 21:38:50 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.negation.NegationContextHitConsumer
02 Oct 2017 21:38:50 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
02 Oct 2017 21:38:50 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
02 Oct 2017 21:38:50 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
02 Oct 2017 21:38:50 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
02 Oct 2017 21:38:50 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
02 Oct 2017 21:38:50 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
02 Oct 2017 21:38:51 INFO ContextAnnotator - Using left , right scope sizes: 10 , 10
02 Oct 2017 21:38:51 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
02 Oct 2017 21:38:51 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
02 Oct 2017 21:38:51 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.status.StatusContextAnalyzer
02 Oct 2017 21:38:51 INFO StatusContextAnalyzer - initBoundaryData() called for ContextInitializer
02 Oct 2017 21:38:51 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.status.StatusContextHitConsumer
02 Oct 2017 21:38:51 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
02 Oct 2017 21:38:51 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
02 Oct 2017 21:38:51 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
02 Oct 2017 21:38:51 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
02 Oct 2017 21:38:51 INFO AbstractJCasTermAnnotator - Using dictionary lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
02 Oct 2017 21:38:51 INFO AbstractJCasTermAnnotator - Exclusion tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS WRB
02 Oct 2017 21:38:51 INFO AbstractJCasTermAnnotator - Using minimum term text span: 3
02 Oct 2017 21:38:51 INFO AbstractJCasTermAnnotator - Using Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml
02 Oct 2017 21:38:51 INFO DictionaryDescriptorParser - Parsing dictionary specifications:
02 Oct 2017 21:38:51 ERROR UmlsUserApprover - User CHANGE_ME not allowed. It is a placeholder reminder.
02 Oct 2017 21:38:51 ERROR UmlsUserApprover - Verify that you are setting command-line option --user or ctakes property umlsUser or environment variable ctakes.umlsuser properly.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 4.15 sec <<< FAILURE!
Results :
Tests in error:
testCPE(org.apache.ctakes.regression.test.RegressionPipelineTest): Initialization of CAS Processor with name "RegressionPipelineAggregateTest" failed.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES template filler 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-template-filler ---
[INFO] Compiling 1 source file to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/classes>
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-template-filler ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-template-filler ---
[INFO] Surefire report directory: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-template-filler ---
[INFO] Building jar: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar>
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-template-filler ---
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/0/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.jar
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/0/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.pom
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 5.589 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 5.279 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.599 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 9.147 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.242 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 25.138 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.619 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.238 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.654 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.197 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.454 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.905 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 19.368 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.622 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 5.050 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 45.047 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 6.580 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.372 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.971 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.677 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.307 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.819 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.848 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.475 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.921 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.513 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.299 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 20.349 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 44.892 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.451 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.337 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.766 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 10.601 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:13 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.733 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.781 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.291 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.449 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.395 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.548 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.514 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.573 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 3.039 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.416 s]
[INFO] ctakes-examples .................................... SUCCESS [ 9.180 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.499 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:13 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.552 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.943 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 11:14 min
[INFO] Finished at: 2017-10-02T21:39:38Z
[INFO] Final Memory: 130M/1506M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #8
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/8/display/redirect?page=changes>
Changes:
[tmill] Fixes CTAKES-459; moves ctakes-coreference test from src/main to src/test.
------------------------------------------
[...truncated 1.01 MB...]
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
02 Oct 2017 15:38:01 INFO RegressionPipelineTest - Creating directory: testdata/generatedoutput/RegressionPipelineCPETest
02 Oct 2017 15:38:01 INFO RegressionPipelineTest - Parsing CPE Descriptor:RegressionPipelineCPETest.xml
02 Oct 2017 15:38:02 INFO Chunker - Chunker model file: org/apache/ctakes/chunker/models/chunker-model.zip
02 Oct 2017 15:38:04 INFO ContextAnnotator - Using left , right scope sizes: 7 , 7
02 Oct 2017 15:38:04 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
02 Oct 2017 15:38:04 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
02 Oct 2017 15:38:04 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.negation.NegationContextAnalyzer
02 Oct 2017 15:38:04 INFO NegationContextAnalyzer - initBoundaryData() called for ContextInitializer
02 Oct 2017 15:38:04 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.negation.NegationContextHitConsumer
02 Oct 2017 15:38:04 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
02 Oct 2017 15:38:04 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
02 Oct 2017 15:38:04 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
02 Oct 2017 15:38:04 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
02 Oct 2017 15:38:04 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
02 Oct 2017 15:38:04 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
02 Oct 2017 15:38:05 INFO ContextAnnotator - Using left , right scope sizes: 10 , 10
02 Oct 2017 15:38:05 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
02 Oct 2017 15:38:05 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
02 Oct 2017 15:38:05 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.status.StatusContextAnalyzer
02 Oct 2017 15:38:05 INFO StatusContextAnalyzer - initBoundaryData() called for ContextInitializer
02 Oct 2017 15:38:05 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.status.StatusContextHitConsumer
02 Oct 2017 15:38:05 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
02 Oct 2017 15:38:05 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
02 Oct 2017 15:38:05 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
02 Oct 2017 15:38:05 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
02 Oct 2017 15:38:05 INFO AbstractJCasTermAnnotator - Using dictionary lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
02 Oct 2017 15:38:05 INFO AbstractJCasTermAnnotator - Exclusion tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS WRB
02 Oct 2017 15:38:05 INFO AbstractJCasTermAnnotator - Using minimum term text span: 3
02 Oct 2017 15:38:05 INFO AbstractJCasTermAnnotator - Using Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml
02 Oct 2017 15:38:05 INFO DictionaryDescriptorParser - Parsing dictionary specifications:
02 Oct 2017 15:38:05 ERROR UmlsUserApprover - User CHANGE_ME not allowed. It is a placeholder reminder.
02 Oct 2017 15:38:05 ERROR UmlsUserApprover - Verify that you are setting command-line option --user or ctakes property umlsUser or environment variable ctakes.umlsuser properly.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 4.49 sec <<< FAILURE!
Results :
Tests in error:
testCPE(org.apache.ctakes.regression.test.RegressionPipelineTest): Initialization of CAS Processor with name "RegressionPipelineAggregateTest" failed.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES template filler 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-template-filler ---
[INFO] Compiling 1 source file to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/classes>
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-template-filler ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-template-filler ---
[INFO] Surefire report directory: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-template-filler ---
[INFO] Building jar: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar>
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-template-filler ---
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.jar
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.pom
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 5.214 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.113 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.551 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.710 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 4.028 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 24.085 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.754 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.155 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.292 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.239 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.576 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.832 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.582 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 5.691 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.927 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 25.446 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.706 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.356 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.621 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 5.026 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.281 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 7.035 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.785 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.415 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.176 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.190 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 3.949 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 23.439 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 46.256 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.303 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.548 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.746 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.006 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:17 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 10.620 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.495 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.822 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.429 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.622 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.527 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.268 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.440 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 2.976 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.549 s]
[INFO] ctakes-examples .................................... SUCCESS [ 9.211 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.363 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:12 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.886 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.577 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 10:43 min
[INFO] Finished at: 2017-10-02T15:38:51Z
[INFO] Final Memory: 126M/1539M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #7
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/7/display/redirect>
------------------------------------------
[...truncated 1.00 MB...]
log4j: Threshold ="null".
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
02 Oct 2017 12:30:55 INFO RegressionPipelineTest - Creating directory: testdata/generatedoutput/RegressionPipelineCPETest
02 Oct 2017 12:30:55 INFO RegressionPipelineTest - Parsing CPE Descriptor:RegressionPipelineCPETest.xml
02 Oct 2017 12:30:56 INFO Chunker - Chunker model file: org/apache/ctakes/chunker/models/chunker-model.zip
02 Oct 2017 12:30:58 INFO ContextAnnotator - Using left , right scope sizes: 7 , 7
02 Oct 2017 12:30:58 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
02 Oct 2017 12:30:58 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
02 Oct 2017 12:30:58 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.negation.NegationContextAnalyzer
02 Oct 2017 12:30:58 INFO NegationContextAnalyzer - initBoundaryData() called for ContextInitializer
02 Oct 2017 12:30:58 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.negation.NegationContextHitConsumer
02 Oct 2017 12:30:58 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
02 Oct 2017 12:30:58 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
02 Oct 2017 12:30:58 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
02 Oct 2017 12:30:58 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
02 Oct 2017 12:30:58 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
02 Oct 2017 12:30:58 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
02 Oct 2017 12:30:59 INFO ContextAnnotator - Using left , right scope sizes: 10 , 10
02 Oct 2017 12:30:59 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
02 Oct 2017 12:30:59 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
02 Oct 2017 12:30:59 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.status.StatusContextAnalyzer
02 Oct 2017 12:30:59 INFO StatusContextAnalyzer - initBoundaryData() called for ContextInitializer
02 Oct 2017 12:30:59 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.status.StatusContextHitConsumer
02 Oct 2017 12:30:59 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
02 Oct 2017 12:30:59 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
02 Oct 2017 12:30:59 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
02 Oct 2017 12:30:59 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
02 Oct 2017 12:30:59 INFO AbstractJCasTermAnnotator - Using dictionary lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
02 Oct 2017 12:30:59 INFO AbstractJCasTermAnnotator - Exclusion tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS WRB
02 Oct 2017 12:30:59 INFO AbstractJCasTermAnnotator - Using minimum term text span: 3
02 Oct 2017 12:30:59 INFO AbstractJCasTermAnnotator - Using Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml
02 Oct 2017 12:30:59 INFO DictionaryDescriptorParser - Parsing dictionary specifications:
02 Oct 2017 12:30:59 ERROR UmlsUserApprover - User CHANGE_ME not allowed. It is a placeholder reminder.
02 Oct 2017 12:30:59 ERROR UmlsUserApprover - Verify that you are setting command-line option --user or ctakes property umlsUser or environment variable ctakes.umlsuser properly.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 4.435 sec <<< FAILURE!
Results :
Tests in error:
testCPE(org.apache.ctakes.regression.test.RegressionPipelineTest): Initialization of CAS Processor with name "RegressionPipelineAggregateTest" failed.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES template filler 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-template-filler ---
[INFO] Compiling 1 source file to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/classes>
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-template-filler ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-template-filler ---
[INFO] Surefire report directory: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-template-filler ---
[INFO] Building jar: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar>
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-template-filler ---
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.jar
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.pom
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 5.300 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.214 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.599 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.780 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.806 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 23.573 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.580 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.332 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.324 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.249 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.465 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 3.792 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.251 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.869 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.922 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 26.704 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 4.670 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 3.433 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.607 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.703 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.688 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.929 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.792 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.425 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.099 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.390 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 4.084 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 24.169 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 44.607 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.554 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.326 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.674 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.172 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:11 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 8.664 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.436 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 7.070 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.568 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.466 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.505 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.531 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.482 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 2.967 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.362 s]
[INFO] ctakes-examples .................................... SUCCESS [ 8.810 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.414 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:10 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.872 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.551 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 10:32 min
[INFO] Finished at: 2017-10-02T12:31:45Z
[INFO] Final Memory: 126M/1528M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped
Build failed in Jenkins: cTAKES-trunk-Java-1.8 #6
Posted by Apache Jenkins Server <je...@builds.apache.org>.
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/6/display/redirect?page=changes>
Changes:
[james-masanz] CTAKES-445 - improvement but not complete fix.
------------------------------------------
[...truncated 1.00 MB...]
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressAppender] additivity to [false].
log4j: Level value for ProgressAppender is [INFO].
log4j: ProgressAppender level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m].
log4j: Adding appender named [noEolAppender] to category [ProgressAppender].
log4j: Retreiving an instance of org.apache.log4j.Logger.
log4j: Setting [ProgressDone] additivity to [false].
log4j: Level value for ProgressDone is [INFO].
log4j: ProgressDone level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%m%n].
log4j: Adding appender named [eolAppender] to category [ProgressDone].
log4j: Level value for root is [INFO].
log4j: root level set to INFO
log4j: Class name: [org.apache.log4j.ConsoleAppender]
log4j: Parsing layout of class: "org.apache.log4j.PatternLayout"
log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy HH:mm:ss} %5p %c{1} - %m%n].
log4j: Adding appender named [consoleAppender] to category [root].
01 Oct 2017 18:40:32 INFO RegressionPipelineTest - Creating directory: testdata/generatedoutput/RegressionPipelineCPETest
01 Oct 2017 18:40:32 INFO RegressionPipelineTest - Parsing CPE Descriptor:RegressionPipelineCPETest.xml
01 Oct 2017 18:40:33 INFO Chunker - Chunker model file: org/apache/ctakes/chunker/models/chunker-model.zip
01 Oct 2017 18:40:35 INFO ContextAnnotator - Using left , right scope sizes: 7 , 7
01 Oct 2017 18:40:35 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
01 Oct 2017 18:40:35 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
01 Oct 2017 18:40:35 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.negation.NegationContextAnalyzer
01 Oct 2017 18:40:35 INFO NegationContextAnalyzer - initBoundaryData() called for ContextInitializer
01 Oct 2017 18:40:35 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.negation.NegationContextHitConsumer
01 Oct 2017 18:40:35 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
01 Oct 2017 18:40:35 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
01 Oct 2017 18:40:35 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
01 Oct 2017 18:40:35 INFO SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
01 Oct 2017 18:40:35 INFO TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
01 Oct 2017 18:40:35 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
01 Oct 2017 18:40:36 INFO ContextAnnotator - Using left , right scope sizes: 10 , 10
01 Oct 2017 18:40:36 INFO ContextAnnotator - Using scope order: LEFT,RIGHT
01 Oct 2017 18:40:36 INFO ContextAnnotator - SCOPE ORDER: [1, 3]
01 Oct 2017 18:40:36 INFO ContextAnnotator - Using context analyzer: org.apache.ctakes.necontexts.status.StatusContextAnalyzer
01 Oct 2017 18:40:36 INFO StatusContextAnalyzer - initBoundaryData() called for ContextInitializer
01 Oct 2017 18:40:36 INFO ContextAnnotator - Using context consumer: org.apache.ctakes.necontexts.status.StatusContextHitConsumer
01 Oct 2017 18:40:36 INFO ContextAnnotator - Using lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
01 Oct 2017 18:40:36 INFO ContextAnnotator - Using focus type: org.apache.ctakes.typesystem.type.textsem.IdentifiedAnnotation
01 Oct 2017 18:40:36 INFO ContextAnnotator - Using context type: org.apache.ctakes.typesystem.type.syntax.BaseToken
01 Oct 2017 18:40:36 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded.
01 Oct 2017 18:40:36 INFO AbstractJCasTermAnnotator - Using dictionary lookup window type: org.apache.ctakes.typesystem.type.textspan.Sentence
01 Oct 2017 18:40:36 INFO AbstractJCasTermAnnotator - Exclusion tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB VBD VBG VBN VBP VBZ WDT WP WPS WRB
01 Oct 2017 18:40:36 INFO AbstractJCasTermAnnotator - Using minimum term text span: 3
01 Oct 2017 18:40:36 INFO AbstractJCasTermAnnotator - Using Dictionary Descriptor: org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml
01 Oct 2017 18:40:36 INFO DictionaryDescriptorParser - Parsing dictionary specifications:
01 Oct 2017 18:40:36 ERROR UmlsUserApprover - User CHANGE_ME not allowed. It is a placeholder reminder.
01 Oct 2017 18:40:36 ERROR UmlsUserApprover - Verify that you are setting command-line option --user or ctakes property umlsUser or environment variable ctakes.umlsuser properly.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 4.292 sec <<< FAILURE!
Results :
Tests in error:
testCPE(org.apache.ctakes.regression.test.RegressionPipelineTest): Initialization of CAS Processor with name "RegressionPipelineAggregateTest" failed.
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Apache cTAKES template filler 4.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-template-filler ---
[INFO] Compiling 1 source file to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/classes>
[INFO]
[INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-template-filler ---
[debug] execute contextualize
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 0 resource
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-template-filler ---
[INFO] Nothing to compile - all classes are up to date
[INFO]
[INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-template-filler ---
[INFO] Surefire report directory: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/surefire-reports>
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ctakes-template-filler ---
[INFO] Building jar: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar>
[INFO]
[INFO] --- maven-site-plugin:3.1:attach-descriptor (attach-descriptor) @ ctakes-template-filler ---
[INFO]
[INFO] --- maven-install-plugin:2.3.1:install (default-install) @ ctakes-template-filler ---
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/target/ctakes-template-filler-4.0.1-SNAPSHOT.jar> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.jar
[INFO] Installing <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-template-filler/pom.xml> to /home/jenkins/jenkins-slave/maven-repositories/1/org/apache/ctakes/ctakes-template-filler/4.0.1-SNAPSHOT/ctakes-template-filler-4.0.1-SNAPSHOT.pom
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[JENKINS] Archiving disabled
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO]
[INFO] Apache cTAKES ...................................... SUCCESS [ 5.095 s]
[INFO] ctakes-gui-res ..................................... SUCCESS [ 4.209 s]
[INFO] Apache cTAKES Resources core ....................... SUCCESS [ 2.612 s]
[INFO] Apache cTAKES common type system ................... SUCCESS [ 7.415 s]
[INFO] Apache cTAKES utils ................................ SUCCESS [ 3.704 s]
[INFO] Apache cTAKES core ................................. SUCCESS [ 22.640 s]
[INFO] ctakes-gui ......................................... SUCCESS [ 4.861 s]
[INFO] Apache cTAKES Resources pos-tagger ................. SUCCESS [ 3.108 s]
[INFO] Apache cTAKES part-of-speech tagger ................ SUCCESS [ 5.063 s]
[INFO] Apache cTAKES Resources ctakes-chunker-res ......... SUCCESS [ 3.073 s]
[INFO] Apache cTAKES chunker .............................. SUCCESS [ 3.542 s]
[INFO] Apache cTAKES document preprocessor ................ SUCCESS [ 4.535 s]
[INFO] Apache cTAKES Resources dictionary-lookup .......... SUCCESS [ 10.135 s]
[INFO] Apache cTAKES dictionary lookup .................... SUCCESS [ 4.702 s]
[INFO] Apache cTAKES context dependent tokenizer .......... SUCCESS [ 4.757 s]
[INFO] Apache cTAKES Resources lvg ........................ SUCCESS [ 30.881 s]
[INFO] Apache cTAKES LVG lexical tools .................... SUCCESS [ 5.123 s]
[INFO] Apache cTAKES Resources ne-contexts ................ SUCCESS [ 2.305 s]
[INFO] Apache cTAKES named entity contexts ................ SUCCESS [ 4.353 s]
[INFO] Apache cTAKES Resources constituency-parser ........ SUCCESS [ 4.814 s]
[INFO] Apache cTAKES Constituency Parser .................. SUCCESS [ 3.151 s]
[INFO] Apache cTAKES Resources coreference ................ SUCCESS [ 6.884 s]
[INFO] Apache cTAKES Resources temporal ................... SUCCESS [ 2.778 s]
[INFO] Apache cTAKES Resources relation-extractor ......... SUCCESS [ 2.430 s]
[INFO] Apache cTAKES Resources dictionary-lookup-fast-res . SUCCESS [ 3.064 s]
[INFO] Apache cTAKES dictionary lookup fast ............... SUCCESS [ 3.082 s]
[INFO] Apache cTAKES Resources assertion .................. SUCCESS [ 3.901 s]
[INFO] Apache cTAKES Resources dependency-parser .......... SUCCESS [ 22.424 s]
[INFO] Apache cTAKES Dependency Parser .................... SUCCESS [ 43.972 s]
[INFO] Apache cTAKES Assertion ............................ SUCCESS [ 6.116 s]
[INFO] ctakes-clinical-pipeline-res ....................... SUCCESS [ 2.304 s]
[INFO] Apache cTAKES ctakes-clinical-pipeline ............. SUCCESS [ 6.626 s]
[INFO] Apache cTAKES Relation Extractor ................... SUCCESS [ 11.050 s]
[INFO] Apache cTAKES Temporal Information Extraction ...... SUCCESS [02:10 min]
[INFO] Apache cTAKES CoReference Resolver ................. SUCCESS [ 9.382 s]
[INFO] Apache cTAKES Resources drug-ner ................... SUCCESS [ 2.474 s]
[INFO] Apache cTAKES Drug NER ............................. SUCCESS [ 6.995 s]
[INFO] Apache cTAKES Resources side-effect ................ SUCCESS [ 2.575 s]
[INFO] Apache cTAKES Side Effects ......................... SUCCESS [ 6.185 s]
[INFO] Apache cTAKES Resources smoking-status ............. SUCCESS [ 2.494 s]
[INFO] Apache cTAKES Smoking Status ....................... SUCCESS [ 6.695 s]
[INFO] Apache cTAKES Resources assertion-zoner ............ SUCCESS [ 2.883 s]
[INFO] Apache cTAKES Assertion's zoner .................... SUCCESS [ 2.968 s]
[INFO] ctakes-examples-res ................................ SUCCESS [ 2.434 s]
[INFO] ctakes-examples .................................... SUCCESS [ 9.030 s]
[INFO] Apache cTAKES Resources ctakes-ytex-res ............ SUCCESS [ 2.338 s]
[INFO] Apache cTAKES YTEX ................................. FAILURE [01:14 min]
[INFO] Apache cTAKES YTEX UIMA ............................ SKIPPED
[INFO] Apache cTAKES YTEX Web ............................. SKIPPED
[INFO] Apache cTAKES Distribution ......................... SKIPPED
[INFO] Apache cTAKES Regression-test ...................... FAILURE [ 11.729 s]
[INFO] Apache cTAKES template filler ...................... SUCCESS [ 7.455 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 10:34 min
[INFO] Finished at: 2017-10-01T18:41:22Z
[INFO] Final Memory: 128M/1528M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (surefire-it) on project ctakes-ytex: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-ytex/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.12.1:test (default-test) on project ctakes-regression-test: There are test failures.
[ERROR]
[ERROR] Please refer to <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/ws/ctakes-regression-test/target/surefire-reports> for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR] mvn <goals> -rf :ctakes-ytex
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
Sending e-mails to: notifications@ctakes.apache.org
channel stopped