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Posted to commits@airavata.apache.org by ma...@apache.org on 2018/03/30 15:11:19 UTC
[airavata] branch group-based-auth updated (d7e9193 -> 11efe8a)
This is an automated email from the ASF dual-hosted git repository.
machristie pushed a change to branch group-based-auth
in repository https://gitbox.apache.org/repos/asf/airavata.git.
from d7e9193 Merge pull request #185 from tilaks26/AIRAVATA-2712
add a812582 Modifed the entities
add 03fc65d Modified entities, repository and registry handler classes
add 32b58e3 Adding registries for AppDeployment, AppInterface and AppModule
add 305b816 Modified method in RegistryServerHandler
add ceb32e9 Modified ApplicationInterface entity to store list of AppModules
add 1396102 Adding new methods to the repositories
add 4819cc8 Adding ApplicationDeploymentRepositoryTest with a few changes
add 05fd715 Adding ApplicationInterfaceRepositoryTest with a few changes
add cda1a7a Commenting exp catalog tests
add 2777056 Making changes to method calls in RegistryServerHandler.java
add e7503a3 Fixing build error
add 343f13f Converting the code logic for accessible app ids to queries
add ad0466c Adding Apache License header
add a4f63fc Modified the logger initialization
add cb39b7d Modifying test for getAccessible methods
add 37e2164 Mofifying query and tests
add 63cebd9 Modified accessibleAppIds variable name and getAccessibleAppModules query
add c7a5be1 Modifying test case for getAccessibleApplicationModules
add 9021781 Corrected the annotation for ApplicationInterfaceEntity
add adfbc2b Removing unwanted app io attributes
add 631f2ec Modifed the entities
add 8daae07 Modified entities, repository and registry handler classes
add b88bed0 Merging with upstream/registry-refactoring
add 799ab29 Merge remote-tracking branch 'upstream/registry-refactoring' into registry-refactoring
add cb2918b Adding registries for AppDeployment, AppInterface and AppModule
add 02aaa54 Modified method in RegistryServerHandler
add 5534a5a Merge remote-tracking branch 'upstream/registry-refactoring' into registry-refactoring
add 7ac86f6 Merge remote-tracking branch 'upstream/registry-refactoring' into registry-refactoring
add 9dc2f64 Modified ApplicationInterface entity to store list of AppModules
add 2687226 Adding new methods to the repositories
add cf8a98a Adding ApplicationDeploymentRepositoryTest with a few changes
add 44a1f64 Adding ApplicationInterfaceRepositoryTest with a few changes
add aaf6556 Commenting exp catalog tests
add a4b16f2 Making changes to method calls in RegistryServerHandler.java
add 5f89fb8 Fixing build error
add 5d985b6 Converting the code logic for accessible app ids to queries
add 8c1ff2e Adding Apache License header
add 21d059c Modified the logger initialization
add c56bfdf Modifying test for getAccessible methods
add 7bc9d50 Resolving merge conflict and adding changes to getAccessible methods
add acfd49b Mofifying query and tests
add a05fd1d Modified accessibleAppIds variable name and getAccessibleAppModules query
add f00eb1c Modifying test case for getAccessibleApplicationModules
add 19b8afc Corrected the annotation for ApplicationInterfaceEntity
add 7490512 Removing unwanted app io attributes
add acddc8b Merging
add 150d310 Cleaning up the code
add a826a98 Reuse single Repository object in the handler
add 701c8f6 Removing JPA annocations for Id classes
add b9cf983 Replacing queries with AbstractRepository methods
add 22389a5 Resolving merge conflicts
add f4d4e22 Removing unused logger
add 49d1f39 Modifying the format for queries with LIKE
new 11efe8a Merge pull request #167 from tilaks26/registry-refactoring
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Summary of changes:
modules/registry-refactoring/pom.xml | 3 +-
.../entities/appcatalog/AppEnvironmentEntity.java | 30 ++-
.../appcatalog/AppModuleMappingEntity.java | 57 +++-
.../entities/appcatalog/AppModuleMappingPK.java | 6 +-
.../appcatalog/ApplicationDeploymentEntity.java | 176 +++++++++++--
.../appcatalog/ApplicationInputEntity.java | 135 ++++++----
.../entities/appcatalog/ApplicationInputPK.java | 20 +-
.../appcatalog/ApplicationInterfaceEntity.java | 69 ++++-
.../appcatalog/ApplicationModuleEntity.java | 42 +--
.../appcatalog/ApplicationOutputEntity.java | 114 ++++----
.../entities/appcatalog/ApplicationOutputPK.java | 20 +-
.../appcatalog/BatchQueueResourcePolicyEntity.java | 22 +-
.../appcatalog/BatchQueueResourcePolicyPK.java | 23 +-
.../appcatalog/CloudJobSubmissionEntity.java | 3 +
.../appcatalog/ComputeResourcePolicyEntity.java | 22 +-
.../appcatalog/ComputeResourcePolicyPK.java | 23 +-
.../appcatalog/GlobusGkEndpointEntity.java | 2 +-
.../appcatalog/GlobusSubmissionEntity.java | 2 +-
.../entities/appcatalog/GridftpEndpointEntity.java | 2 +-
.../appcatalog/GroupComputeResourcePrefEntity.java | 21 +-
.../appcatalog/GroupComputeResourcePrefPK.java | 21 +-
.../appcatalog/GroupResourceProfileEntity.java | 21 +-
.../appcatalog/GroupResourceProfilePK.java | 21 +-
.../GroupSSHAccountProvisionerConfig.java | 21 +-
.../GroupSSHAccountProvisionerConfigPK.java | 21 +-
.../entities/appcatalog/GsisshExportEntity.java | 2 +-
.../appcatalog/GsisshPostjobcommandEntity.java | 2 +-
.../appcatalog/GsisshPrejobcommandEntity.java | 2 +-
.../appcatalog/GsisshSubmissionEntity.java | 2 +-
.../appcatalog/LibraryApendPathEntity.java | 23 +-
.../appcatalog/LibraryPrependPathEntity.java | 24 +-
...tjobCommandPK.java => ModuleLoadCmdEntity.java} | 56 ++--
...{PostjobCommandPK.java => ModuleLoadCmdPK.java} | 17 +-
.../entities/appcatalog/PostjobCommandEntity.java | 51 +++-
.../core/entities/appcatalog/PostjobCommandPK.java | 6 +-
.../entities/appcatalog/PrejobCommandEntity.java | 51 +++-
.../core/entities/appcatalog/PrejobCommandPK.java | 6 +-
.../SSHAccountProvisionerConfiguration.java | 4 +
.../SSHAccountProvisionerConfigurationPK.java | 3 +
.../appcatalog/StorageInterfaceEntity.java | 2 +-
.../entities/appcatalog/StorageResourceEntity.java | 4 +-
.../appcatalog/UnicoreSubmissionEntity.java | 2 +-
.../ApplicationDeploymentRepository.java | 187 +++++++++++++
.../appcatalog/ApplicationInputRepository.java} | 21 +-
.../appcatalog/ApplicationInterfaceRepository.java | 288 +++++++++++++++++++++
.../appcatalog/ApplicationModuleRepository.java} | 27 +-
.../appcatalog/ApplicationOutputRepository.java} | 17 +-
.../appcatalog/BatchQueuePolicyRepository.java | 19 ++
.../appcatalog/BatchQueueRepository.java | 19 ++
.../ComputeResourcePolicyRepository.java | 19 ++
.../appcatalog/ComputeResourcePrefRepository.java | 19 ++
.../appcatalog/ComputeResourceRepository.java | 19 ++
.../appcatalog/DataMovementRepository.java | 19 ++
.../appcatalog/GroupResourceProfileRepository.java | 19 ++
.../appcatalog/GrpComputePrefRepository.java | 19 ++
.../appcatalog/GwyResourceProfileRepository.java | 19 ++
.../JobSubmissionInterfaceRepository.java | 19 ++
.../appcatalog/ResourceJobManagerRepository.java | 19 ++
.../appcatalog/StoragePrefRepository.java | 19 ++
.../UserComputeResourcePreferenceRepository.java | 1 -
.../UserStoragePreferenceRepository.java | 1 -
.../airavata/registry/core/utils/DBConstants.java | 82 ++++++
.../core/utils/JPAUtil/AppCatalogJPAUtils.java | 19 ++
.../registry/core/utils/QueryConstants.java | 78 +++++-
.../src/main/resources/META-INF/persistence.xml | 6 +-
.../repositories/ExperimentRepositoryTest.java | 86 +++---
.../repositories/ReplicaCatalogRepositoryTest.java | 66 ++---
.../core/repositories/WorkflowRepositoryTest.java | 64 ++---
.../core/repositories/WorkspaceRepositoryTest.java | 184 ++++++-------
.../ApplicationDeploymentRepositoryTest.java | 194 ++++++++++++++
.../ApplicationInterfaceRepositoryTest.java | 164 ++++++++++++
.../appcatalog/ComputeResourceRepositoryTest.java | 21 +-
.../appcatalog/GatewayProfileRepositoryTest.java | 19 ++
.../GroupResourceProfileRepositoryTest.java | 27 +-
.../registry/cpi/ApplicationDeployment.java | 4 +-
.../registry/cpi/ApplicationInterface.java | 4 +-
.../api/service/handler/RegistryServerHandler.java | 91 +++----
77 files changed, 2407 insertions(+), 626 deletions(-)
copy modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/appcatalog/{PostjobCommandPK.java => ModuleLoadCmdEntity.java} (57%)
copy modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/entities/appcatalog/{PostjobCommandPK.java => ModuleLoadCmdPK.java} (84%)
create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/appcatalog/ApplicationDeploymentRepository.java
copy modules/{workflow/workflow-core/src/main/java/org/apache/airavata/workflow/core/dag/port/InPort.java => registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/appcatalog/ApplicationInputRepository.java} (64%)
create mode 100644 modules/registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/appcatalog/ApplicationInterfaceRepository.java
copy modules/{commons/src/main/java/org/apache/airavata/common/utils/DBEventService.java => registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/appcatalog/ApplicationModuleRepository.java} (63%)
copy modules/{workflow/workflow-core/src/main/java/org/apache/airavata/workflow/core/dag/nodes/OutputNode.java => registry-refactoring/src/main/java/org/apache/airavata/registry/core/repositories/appcatalog/ApplicationOutputRepository.java} (63%)
create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/appcatalog/ApplicationDeploymentRepositoryTest.java
create mode 100644 modules/registry-refactoring/src/test/java/org/apache/airavata/registry/core/repositories/appcatalog/ApplicationInterfaceRepositoryTest.java
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[airavata] 01/01: Merge pull request #167 from
tilaks26/registry-refactoring
Posted by ma...@apache.org.
This is an automated email from the ASF dual-hosted git repository.
machristie pushed a commit to branch group-based-auth
in repository https://gitbox.apache.org/repos/asf/airavata.git
commit 11efe8a64baf365dc96f4193f57977a7a76e635d
Merge: d7e9193 49d1f39
Author: Marcus Christie <ma...@iu.edu>
AuthorDate: Fri Mar 30 11:11:16 2018 -0400
Merge pull request #167 from tilaks26/registry-refactoring
[AIRAVATA-2657] Refactoring App Catalog Implementation - ApplicationDeployment and ApplicationInterface Modules
modules/registry-refactoring/pom.xml | 3 +-
.../entities/appcatalog/AppEnvironmentEntity.java | 30 ++-
.../appcatalog/AppModuleMappingEntity.java | 57 +++-
.../entities/appcatalog/AppModuleMappingPK.java | 6 +-
.../appcatalog/ApplicationDeploymentEntity.java | 176 +++++++++++--
.../appcatalog/ApplicationInputEntity.java | 135 ++++++----
.../entities/appcatalog/ApplicationInputPK.java | 20 +-
.../appcatalog/ApplicationInterfaceEntity.java | 69 ++++-
.../appcatalog/ApplicationModuleEntity.java | 42 +--
.../appcatalog/ApplicationOutputEntity.java | 114 ++++----
.../entities/appcatalog/ApplicationOutputPK.java | 20 +-
.../appcatalog/BatchQueueResourcePolicyEntity.java | 22 +-
.../appcatalog/BatchQueueResourcePolicyPK.java | 23 +-
.../appcatalog/CloudJobSubmissionEntity.java | 3 +
.../appcatalog/ComputeResourcePolicyEntity.java | 22 +-
.../appcatalog/ComputeResourcePolicyPK.java | 23 +-
.../appcatalog/GlobusGkEndpointEntity.java | 2 +-
.../appcatalog/GlobusSubmissionEntity.java | 2 +-
.../entities/appcatalog/GridftpEndpointEntity.java | 2 +-
.../appcatalog/GroupComputeResourcePrefEntity.java | 21 +-
.../appcatalog/GroupComputeResourcePrefPK.java | 21 +-
.../appcatalog/GroupResourceProfileEntity.java | 21 +-
.../appcatalog/GroupResourceProfilePK.java | 21 +-
.../GroupSSHAccountProvisionerConfig.java | 21 +-
.../GroupSSHAccountProvisionerConfigPK.java | 21 +-
.../entities/appcatalog/GsisshExportEntity.java | 2 +-
.../appcatalog/GsisshPostjobcommandEntity.java | 2 +-
.../appcatalog/GsisshPrejobcommandEntity.java | 2 +-
.../appcatalog/GsisshSubmissionEntity.java | 2 +-
.../appcatalog/LibraryApendPathEntity.java | 23 +-
.../appcatalog/LibraryPrependPathEntity.java | 24 +-
...tjobCommandPK.java => ModuleLoadCmdEntity.java} | 56 ++--
...{PostjobCommandPK.java => ModuleLoadCmdPK.java} | 17 +-
.../entities/appcatalog/PostjobCommandEntity.java | 51 +++-
.../core/entities/appcatalog/PostjobCommandPK.java | 6 +-
.../entities/appcatalog/PrejobCommandEntity.java | 51 +++-
.../core/entities/appcatalog/PrejobCommandPK.java | 6 +-
.../SSHAccountProvisionerConfiguration.java | 4 +
.../SSHAccountProvisionerConfigurationPK.java | 3 +
.../appcatalog/StorageInterfaceEntity.java | 2 +-
.../entities/appcatalog/StorageResourceEntity.java | 4 +-
.../appcatalog/UnicoreSubmissionEntity.java | 2 +-
.../ApplicationDeploymentRepository.java | 187 +++++++++++++
.../appcatalog/ApplicationInputRepository.java} | 36 +--
.../appcatalog/ApplicationInterfaceRepository.java | 288 +++++++++++++++++++++
.../appcatalog/ApplicationModuleRepository.java} | 35 +--
.../appcatalog/ApplicationOutputRepository.java} | 36 +--
.../appcatalog/BatchQueuePolicyRepository.java | 19 ++
.../appcatalog/BatchQueueRepository.java | 19 ++
.../ComputeResourcePolicyRepository.java | 19 ++
.../appcatalog/ComputeResourcePrefRepository.java | 19 ++
.../appcatalog/ComputeResourceRepository.java | 19 ++
.../appcatalog/DataMovementRepository.java | 19 ++
.../appcatalog/GroupResourceProfileRepository.java | 19 ++
.../appcatalog/GrpComputePrefRepository.java | 19 ++
.../appcatalog/GwyResourceProfileRepository.java | 19 ++
.../JobSubmissionInterfaceRepository.java | 19 ++
.../appcatalog/ResourceJobManagerRepository.java | 19 ++
.../appcatalog/StoragePrefRepository.java | 19 ++
.../UserComputeResourcePreferenceRepository.java | 1 -
.../UserStoragePreferenceRepository.java | 1 -
.../airavata/registry/core/utils/DBConstants.java | 82 ++++++
.../core/utils/JPAUtil/AppCatalogJPAUtils.java | 19 ++
.../registry/core/utils/QueryConstants.java | 78 +++++-
.../src/main/resources/META-INF/persistence.xml | 6 +-
.../repositories/ExperimentRepositoryTest.java | 86 +++---
.../repositories/ReplicaCatalogRepositoryTest.java | 66 ++---
.../core/repositories/WorkflowRepositoryTest.java | 64 ++---
.../core/repositories/WorkspaceRepositoryTest.java | 184 ++++++-------
.../ApplicationDeploymentRepositoryTest.java | 194 ++++++++++++++
.../ApplicationInterfaceRepositoryTest.java | 164 ++++++++++++
.../appcatalog/ComputeResourceRepositoryTest.java | 21 +-
.../appcatalog/GatewayProfileRepositoryTest.java | 19 ++
.../GroupResourceProfileRepositoryTest.java | 27 +-
.../registry/cpi/ApplicationDeployment.java | 4 +-
.../registry/cpi/ApplicationInterface.java | 4 +-
.../api/service/handler/RegistryServerHandler.java | 91 +++----
77 files changed, 2411 insertions(+), 664 deletions(-)
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