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Posted to issues@flink.apache.org by "Dian Fu (Jira)" <ji...@apache.org> on 2020/05/10 12:01:00 UTC
[jira] [Updated] (FLINK-16014) S3 plugin ClassNotFoundException
SAXParser
[ https://issues.apache.org/jira/browse/FLINK-16014?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Dian Fu updated FLINK-16014:
----------------------------
Fix Version/s: 1.10.1
> S3 plugin ClassNotFoundException SAXParser
> ------------------------------------------
>
> Key: FLINK-16014
> URL: https://issues.apache.org/jira/browse/FLINK-16014
> Project: Flink
> Issue Type: Bug
> Components: FileSystems
> Affects Versions: 1.10.0, 1.11.0
> Reporter: Arvid Heise
> Assignee: Arvid Heise
> Priority: Major
> Labels: pull-request-available
> Fix For: 1.10.1, 1.11.0
>
> Time Spent: 20m
> Remaining Estimate: 0h
>
> While stress-testing s3 plugin on EMR.
>
> {noformat}
> org.apache.flink.util.FlinkRuntimeException: Could not perform checkpoint 2 for operator Map (114/160).
> at org.apache.flink.streaming.runtime.tasks.StreamTask.triggerCheckpointOnBarrier(StreamTask.java:839)
> at org.apache.flink.streaming.runtime.io.CheckpointBarrierHandler.notifyCheckpoint(CheckpointBarrierHandler.java:104)
> at org.apache.flink.streaming.runtime.io.CheckpointBarrierUnaligner.notifyBarrierReceived(CheckpointBarrierUnaligner.java:149)
> at org.apache.flink.streaming.runtime.io.InputProcessorUtil$1.lambda$notifyBarrierReceived$0(InputProcessorUtil.java:80)
> at org.apache.flink.streaming.runtime.tasks.StreamTaskActionExecutor$SynchronizedStreamTaskActionExecutor.run(StreamTaskActionExecutor.java:87)
> at org.apache.flink.streaming.runtime.tasks.mailbox.Mail.run(Mail.java:78)
> at org.apache.flink.streaming.runtime.tasks.mailbox.MailboxProcessor.processMail(MailboxProcessor.java:255)
> at org.apache.flink.streaming.runtime.tasks.mailbox.MailboxProcessor.runMailboxLoop(MailboxProcessor.java:186)
> at org.apache.flink.streaming.runtime.tasks.StreamTask.runMailboxLoop(StreamTask.java:508)
> at org.apache.flink.streaming.runtime.tasks.StreamTask.invoke(StreamTask.java:492)
> at org.apache.flink.runtime.taskmanager.Task.doRun(Task.java:707)
> at org.apache.flink.runtime.taskmanager.Task.run(Task.java:532)
> at java.lang.Thread.run(Thread.java:748)
> Caused by: java.lang.RuntimeException: org.apache.hadoop.fs.s3a.AWSClientIOException: getFileStatus on s3://emr-unaligned-checkpoints-testing-eu-central-1/inflight/9ae223e41008b17568d7f63c12360268_output/part-file.-1: com.amazonaws.SdkClientException: Couldn't initialize a SAX driver to create an XMLReader: Couldn't initialize a SAX driver to create an XMLReader
> at org.apache.flink.runtime.io.network.BufferPersisterImpl$Writer.checkErroneousUnsafe(BufferPersisterImpl.java:262)
> at org.apache.flink.runtime.io.network.BufferPersisterImpl$Writer.add(BufferPersisterImpl.java:137)
> at org.apache.flink.runtime.io.network.BufferPersisterImpl.addBuffers(BufferPersisterImpl.java:66)
> at org.apache.flink.streaming.runtime.tasks.StreamTask.prepareInflightDataSnapshot(StreamTask.java:935)
> at org.apache.flink.streaming.runtime.tasks.StreamTask.lambda$performCheckpoint$5(StreamTask.java:898)
> at org.apache.flink.streaming.runtime.tasks.StreamTaskActionExecutor$SynchronizedStreamTaskActionExecutor.runThrowing(StreamTaskActionExecutor.java:94)
> at org.apache.flink.streaming.runtime.tasks.StreamTask.performCheckpoint(StreamTask.java:870)
> at org.apache.flink.streaming.runtime.tasks.StreamTask.triggerCheckpointOnBarrier(StreamTask.java:826)
> ... 12 more
> Caused by: org.apache.hadoop.fs.s3a.AWSClientIOException: getFileStatus on s3://emr-unaligned-checkpoints-testing-eu-central-1/inflight/9ae223e41008b17568d7f63c12360268_output/part-file.-1: com.amazonaws.SdkClientException: Couldn't initialize a SAX driver to create an XMLReader: Couldn't initialize a SAX driver to create an XMLReader
> at org.apache.hadoop.fs.s3a.S3AUtils.translateException(S3AUtils.java:177)
> at org.apache.hadoop.fs.s3a.S3AUtils.translateException(S3AUtils.java:145)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.s3GetFileStatus(S3AFileSystem.java:2251)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.innerGetFileStatus(S3AFileSystem.java:2149)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.getFileStatus(S3AFileSystem.java:2088)
> at org.apache.hadoop.fs.FileSystem.exists(FileSystem.java:1734)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.exists(S3AFileSystem.java:2970)
> at org.apache.flink.fs.s3hadoop.common.HadoopFileSystem.exists(HadoopFileSystem.java:152)
> at org.apache.flink.core.fs.PluginFileSystemFactory$ClassLoaderFixingFileSystem.exists(PluginFileSystemFactory.java:143)
> at org.apache.flink.core.fs.SafetyNetWrapperFileSystem.exists(SafetyNetWrapperFileSystem.java:102)
> at org.apache.flink.runtime.io.network.BufferPersisterImpl$Writer.get(BufferPersisterImpl.java:213)
> at org.apache.flink.runtime.io.network.BufferPersisterImpl$Writer.run(BufferPersisterImpl.java:167)
> Caused by: com.amazonaws.SdkClientException: Couldn't initialize a SAX driver to create an XMLReader
> at com.amazonaws.services.s3.model.transform.XmlResponsesSaxParser.<init>(XmlResponsesSaxParser.java:118)
> at com.amazonaws.services.s3.model.transform.Unmarshallers$ListObjectsV2Unmarshaller.unmarshall(Unmarshallers.java:87)
> at com.amazonaws.services.s3.model.transform.Unmarshallers$ListObjectsV2Unmarshaller.unmarshall(Unmarshallers.java:77)
> at com.amazonaws.services.s3.internal.S3XmlResponseHandler.handle(S3XmlResponseHandler.java:62)
> at com.amazonaws.services.s3.internal.S3XmlResponseHandler.handle(S3XmlResponseHandler.java:31)
> at com.amazonaws.http.response.AwsResponseHandlerAdapter.handle(AwsResponseHandlerAdapter.java:70)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.handleResponse(AmazonHttpClient.java:1554)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeOneRequest(AmazonHttpClient.java:1272)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeHelper(AmazonHttpClient.java:1056)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.doExecute(AmazonHttpClient.java:743)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.executeWithTimer(AmazonHttpClient.java:717)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.execute(AmazonHttpClient.java:699)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutor.access$500(AmazonHttpClient.java:667)
> at com.amazonaws.http.AmazonHttpClient$RequestExecutionBuilderImpl.execute(AmazonHttpClient.java:649)
> at com.amazonaws.http.AmazonHttpClient.execute(AmazonHttpClient.java:513)
> at com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:4325)
> at com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:4272)
> at com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:4266)
> at com.amazonaws.services.s3.AmazonS3Client.listObjectsV2(AmazonS3Client.java:876)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.lambda$listObjects$5(S3AFileSystem.java:1262)
> at org.apache.hadoop.fs.s3a.Invoker.retryUntranslated(Invoker.java:317)
> at org.apache.hadoop.fs.s3a.Invoker.retryUntranslated(Invoker.java:280)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.listObjects(S3AFileSystem.java:1255)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.s3GetFileStatus(S3AFileSystem.java:2223)
> ... 9 more
> Caused by: org.xml.sax.SAXException: SAX2 driver class org.apache.xerces.parsers.SAXParser not found
> java.lang.ClassNotFoundException: org.apache.xerces.parsers.SAXParser
> at org.xml.sax.helpers.XMLReaderFactory.loadClass(XMLReaderFactory.java:230)
> at org.xml.sax.helpers.XMLReaderFactory.createXMLReader(XMLReaderFactory.java:191)
> at com.amazonaws.services.s3.model.transform.XmlResponsesSaxParser.<init>(XmlResponsesSaxParser.java:115)
> ... 32 more
> Caused by: java.lang.ClassNotFoundException: org.apache.xerces.parsers.SAXParser
> at java.net.URLClassLoader.findClass(URLClassLoader.java:382)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
> at org.apache.flink.core.plugin.PluginLoader$PluginClassLoader.loadClass(PluginLoader.java:149)
> at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
> at org.xml.sax.helpers.NewInstance.newInstance(NewInstance.java:82)
> at org.xml.sax.helpers.XMLReaderFactory.loadClass(XMLReaderFactory.java:228)
> ... 34 more{noformat}
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