You are viewing a plain text version of this content. The canonical link for it is here.
Posted to issues@arrow.apache.org by "Robert Tidwell (Jira)" <ji...@apache.org> on 2022/09/01 16:37:00 UTC
[jira] [Created] (ARROW-17595) Installation Error stdlib.h no such file or directory
Robert Tidwell created ARROW-17595:
--------------------------------------
Summary: Installation Error stdlib.h no such file or directory
Key: ARROW-17595
URL: https://issues.apache.org/jira/browse/ARROW-17595
Project: Apache Arrow
Issue Type: Bug
Components: C++
Affects Versions: 9.0.0
Environment: OEL 8.5
Reporter: Robert Tidwell
Getting error installing arrow.
/opt/rh/gcc-toolset-11/root/usr/include/c++/11/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
75 | #include_next <stdlib.h>
Using the c++11 toolset. Tried with default c++ on the system and was getting the same type error. OS is OEL 8.5.
Here is the detailed output:Installing package into ‘/usr/lib64/R/library’
(as ‘lib’ is unspecified)
trying URL 'http://cwypatch04.corp.acxiom.net/prod/cran/src/contrib/arrow_9.0.0.tar.gz'
Content type 'application/octet-stream' length 4900968 bytes (4.7 MB)
==================================================
downloaded 4.7 MB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Found local C++ source: 'tools/cpp'
*** Building libarrow from source
For build options and troubleshooting, see the install vignette:
https://cran.r-project.org/web/packages/arrow/vignettes/install.html
*** Building with MAKEFLAGS= -j2
**** cmake: /bin/cmake
**** arrow with SOURCE_DIR='tools/cpp' BUILD_DIR='/tmp/rmt' DEST_DIR='libarrow/arrow-9.0.0' CMAKE='/bin/cmake' EXTRA_CMAKE_FLAGS='' CC='gcc -m64' CXX='g++ -m64 -std=gnu++11' LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ARROW_S3='OFF' ARROW_GCS='OFF' ARROW_MIMALLOC='OFF'
++ pwd
+ : /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow
+ : tools/cpp
+ : /tmp/rmt
+ : libarrow/arrow-9.0.0
+ : /bin/cmake
++ cd tools/cpp
++ pwd
+ SOURCE_DIR=/tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp
++ mkdir -p libarrow/arrow-9.0.0
++ cd libarrow/arrow-9.0.0
++ pwd
+ DEST_DIR=/tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/libarrow/arrow-9.0.0
+ '[' '' '!=' '' ']'
+ '[' '' = false ']'
+ ARROW_DEFAULT_PARAM=OFF
+ mkdir -p /tmp/rmt
+ pushd /tmp/rmt
/tmp/rmt /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow
+ /bin/cmake -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=AUTO -DAWSSDK_SOURCE= -DARROW_FILESYSTEM=ON -DARROW_GCS=OFF -DARROW_JEMALLOC=OFF -DARROW_MIMALLOC=OFF -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_S3=OFF -DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF -DARROW_WITH_LZ4=ON -DARROW_WITH_RE2=ON -DARROW_WITH_SNAPPY=ON -DARROW_WITH_UTF8PROC=ON -DARROW_WITH_ZLIB=OFF -DARROW_WITH_ZSTD=OFF -DARROW_VERBOSE_THIRDPARTY_BUILD=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_INSTALL_PREFIX=/tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/libarrow/arrow-9.0.0 -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=OFF -Dxsimd_SOURCE= -G 'Unix Makefiles' /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp
-- Building using CMake version: 3.20.2
-- The C compiler identification is GNU 11.2.1
-- The CXX compiler identification is GNU 11.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - failed
-- Check for working C compiler: /opt/rh/gcc-toolset-11/root/usr/bin/gcc
-- Check for working C compiler: /opt/rh/gcc-toolset-11/root/usr/bin/gcc - works
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - failed
-- Check for working CXX compiler: /opt/rh/gcc-toolset-11/root/usr/bin/g++
-- Check for working CXX compiler: /opt/rh/gcc-toolset-11/root/usr/bin/g++ - works
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 9.0.0 (full: '9.0.0')
-- Arrow SO version: 900 (full: 900.0.0)
-- clang-tidy 12 not found
-- clang-format 12 not found
-- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN)
-- infer not found
fatal: not a git repository (or any parent up to mount point /)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
-- Found Python3: /bin/python3.6 (found version "3.6.8") found components: Interpreter
-- Found cpplint executable at /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp/build-support/cpplint.py
-- System processor: x86_64
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_AVX2
-- Performing Test CXX_SUPPORTS_AVX2 - Success
-- Performing Test CXX_SUPPORTS_AVX512
-- Performing Test CXX_SUPPORTS_AVX512 - Success
-- Arrow build warning level: PRODUCTION
-- Using ld linker
-- Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE={release,debug,...})
-- Build Type: RELEASE
-- Performing Test CXX_LINKER_SUPPORTS_VERSION_SCRIPT
-- Performing Test CXX_LINKER_SUPPORTS_VERSION_SCRIPT - Success
-- Using AUTO approach to find dependencies
-- ARROW_ABSL_BUILD_VERSION: 20211102.0
-- ARROW_ABSL_BUILD_SHA256_CHECKSUM: dcf71b9cba8dc0ca9940c4b316a0c796be8fab42b070bb6b7cab62b48f0e66c4
-- ARROW_AWSSDK_BUILD_VERSION: 1.8.133
-- ARROW_AWSSDK_BUILD_SHA256_CHECKSUM: d6c495bc06be5e21dac716571305d77437e7cfd62a2226b8fe48d9ab5785a8d6
-- ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.12
-- ARROW_AWS_CHECKSUMS_BUILD_SHA256_CHECKSUM: 394723034b81cc7cd528401775bc7aca2b12c7471c92350c80a0e2fb9d2909fe
-- ARROW_AWS_C_COMMON_BUILD_VERSION: v0.6.9
-- ARROW_AWS_C_COMMON_BUILD_SHA256_CHECKSUM: 928a3e36f24d1ee46f9eec360ec5cebfe8b9b8994fe39d4fa74ff51aebb12717
-- ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.1.5
-- ARROW_AWS_C_EVENT_STREAM_BUILD_SHA256_CHECKSUM: f1b423a487b5d6dca118bfc0d0c6cc596dc476b282258a3228e73a8f730422d4
-- ARROW_BOOST_BUILD_VERSION: 1.75.0
-- ARROW_BOOST_BUILD_SHA256_CHECKSUM: 267e04a7c0bfe85daf796dedc789c3a27a76707e1c968f0a2a87bb96331e2b61
-- ARROW_BROTLI_BUILD_VERSION: v1.0.9
-- ARROW_BROTLI_BUILD_SHA256_CHECKSUM: f9e8d81d0405ba66d181529af42a3354f838c939095ff99930da6aa9cdf6fe46
-- ARROW_BZIP2_BUILD_VERSION: 1.0.8
-- ARROW_BZIP2_BUILD_SHA256_CHECKSUM: ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269
-- ARROW_CARES_BUILD_VERSION: 1.17.2
-- ARROW_CARES_BUILD_SHA256_CHECKSUM: 4803c844ce20ce510ef0eb83f8ea41fa24ecaae9d280c468c582d2bb25b3913d
-- ARROW_CRC32C_BUILD_VERSION: 1.1.2
-- ARROW_CRC32C_BUILD_SHA256_CHECKSUM: ac07840513072b7fcebda6e821068aa04889018f24e10e46181068fb214d7e56
-- ARROW_GBENCHMARK_BUILD_VERSION: v1.6.0
-- ARROW_GBENCHMARK_BUILD_SHA256_CHECKSUM: 1f71c72ce08d2c1310011ea6436b31e39ccab8c2db94186d26657d41747c85d6
-- ARROW_GFLAGS_BUILD_VERSION: v2.2.2
-- ARROW_GFLAGS_BUILD_SHA256_CHECKSUM: 34af2f15cf7367513b352bdcd2493ab14ce43692d2dcd9dfc499492966c64dcf
-- ARROW_GLOG_BUILD_VERSION: v0.5.0
-- ARROW_GLOG_BUILD_SHA256_CHECKSUM: eede71f28371bf39aa69b45de23b329d37214016e2055269b3b5e7cfd40b59f5
-- ARROW_GOOGLE_CLOUD_CPP_BUILD_VERSION: v1.42.0
-- ARROW_GOOGLE_CLOUD_CPP_BUILD_SHA256_CHECKSUM: c06ae9aededbb8aa217a6d2453754daa40b815f9a4004bc4f2d2d215c79828aa
-- ARROW_GRPC_BUILD_VERSION: v1.46.3
-- ARROW_GRPC_BUILD_SHA256_CHECKSUM: d6cbf22cb5007af71b61c6be316a79397469c58c82a942552a62e708bce60964
-- ARROW_GTEST_BUILD_VERSION: 1.11.0
-- ARROW_GTEST_BUILD_SHA256_CHECKSUM: b4870bf121ff7795ba20d20bcdd8627b8e088f2d1dab299a031c1034eddc93d5
-- ARROW_JEMALLOC_BUILD_VERSION: 5.3.0
-- ARROW_JEMALLOC_BUILD_SHA256_CHECKSUM: 2db82d1e7119df3e71b7640219b6dfe84789bc0537983c3b7ac4f7189aecfeaa
-- ARROW_LZ4_BUILD_VERSION: 8f61d8eb7c6979769a484cde8df61ff7c4c77765
-- ARROW_LZ4_BUILD_SHA256_CHECKSUM: 5b072d848f2f93fddb97e1143e22c1bd7fa19fc8431ee69e21758190a88125b4
-- ARROW_MIMALLOC_BUILD_VERSION: v2.0.6
-- ARROW_MIMALLOC_BUILD_SHA256_CHECKSUM: 9f05c94cc2b017ed13698834ac2a3567b6339a8bde27640df5a1581d49d05ce5
-- ARROW_NLOHMANN_JSON_BUILD_VERSION: v3.10.5
-- ARROW_NLOHMANN_JSON_BUILD_SHA256_CHECKSUM: 5daca6ca216495edf89d167f808d1d03c4a4d929cef7da5e10f135ae1540c7e4
-- ARROW_OPENTELEMETRY_BUILD_VERSION: v1.4.1
-- ARROW_OPENTELEMETRY_BUILD_SHA256_CHECKSUM: 301b1ab74a664723560f46c29f228360aff1e2d63e930b963755ea077ae67524
-- ARROW_OPENTELEMETRY_PROTO_BUILD_VERSION: v0.17.0
-- ARROW_OPENTELEMETRY_PROTO_BUILD_SHA256_CHECKSUM: f269fbcb30e17b03caa1decd231ce826e59d7651c0f71c3b28eb5140b4bb5412
-- ARROW_ORC_BUILD_VERSION: 1.7.5
-- ARROW_ORC_BUILD_SHA256_CHECKSUM: b90cae5853e3ea0e5bf64e3883d09d871ec280536e0bb2cc52d08f79f0be0010
-- ARROW_PROTOBUF_BUILD_VERSION: v21.3
-- ARROW_PROTOBUF_BUILD_SHA256_CHECKSUM: 2f723218f6cb709ae4cdc4fb5ed56a5951fc5d466f0128ce4c946b8c78c8c49f
-- ARROW_RAPIDJSON_BUILD_VERSION: 232389d4f1012dddec4ef84861face2d2ba85709
-- ARROW_RAPIDJSON_BUILD_SHA256_CHECKSUM: b9290a9a6d444c8e049bd589ab804e0ccf2b05dc5984a19ed5ae75d090064806
-- ARROW_RE2_BUILD_VERSION: 2022-06-01
-- ARROW_RE2_BUILD_SHA256_CHECKSUM: f89c61410a072e5cbcf8c27e3a778da7d6fd2f2b5b1445cd4f4508bee946ab0f
-- ARROW_SNAPPY_BUILD_VERSION: 1.1.9
-- ARROW_SNAPPY_BUILD_SHA256_CHECKSUM: 75c1fbb3d618dd3a0483bff0e26d0a92b495bbe5059c8b4f1c962b478b6e06e7
-- ARROW_SNAPPY_OLD_BUILD_VERSION: 1.1.8
-- ARROW_SNAPPY_OLD_BUILD_SHA256_CHECKSUM: 16b677f07832a612b0836178db7f374e414f94657c138e6993cbfc5dcc58651f
-- ARROW_SUBSTRAIT_BUILD_VERSION: v0.6.0
-- ARROW_SUBSTRAIT_BUILD_SHA256_CHECKSUM: 7b8583b9684477e9027f417bbfb4febb8acfeb01923dcaa7cf0fd3f921d69c88
-- ARROW_THRIFT_BUILD_VERSION: 0.16.0
-- ARROW_THRIFT_BUILD_SHA256_CHECKSUM: f460b5c1ca30d8918ff95ea3eb6291b3951cf518553566088f3f2be8981f6209
-- ARROW_UCX_BUILD_VERSION: 1.12.1
-- ARROW_UCX_BUILD_SHA256_CHECKSUM: 9bef31aed0e28bf1973d28d74d9ac4f8926c43ca3b7010bd22a084e164e31b71
-- ARROW_UTF8PROC_BUILD_VERSION: v2.7.0
-- ARROW_UTF8PROC_BUILD_SHA256_CHECKSUM: 4bb121e297293c0fd55f08f83afab6d35d48f0af4ecc07523ad8ec99aa2b12a1
-- ARROW_XSIMD_BUILD_VERSION: 8.1.0
-- ARROW_XSIMD_BUILD_SHA256_CHECKSUM: d52551360d37709675237d2a0418e28f70995b5b7cdad7c674626bcfbbf48328
-- ARROW_ZLIB_BUILD_VERSION: 1.2.12
-- ARROW_ZLIB_BUILD_SHA256_CHECKSUM: 91844808532e5ce316b3c010929493c0244f3d37593afd6de04f71821d5136d9
-- ARROW_ZSTD_BUILD_VERSION: v1.5.2
-- ARROW_ZSTD_BUILD_SHA256_CHECKSUM: f7de13462f7a82c29ab865820149e778cbfe01087b3a55b5332707abf9db4a6e
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Looking for _M_ARM64
-- Looking for _M_ARM64 - not found
-- Looking for __SIZEOF_INT128__
-- Looking for __SIZEOF_INT128__ - found
-- Found Boost: /usr/include (found suitable version "1.66.0", minimum required is "1.58")
-- Boost include dir: /usr/include
CMake Warning at cmake_modules/FindSnappyAlt.cmake:25 (find_package):
By not providing "FindSnappy.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "Snappy", but
CMake did not find one.
Could not find a package configuration file provided by "Snappy" with any
of the following names:
SnappyConfig.cmake
snappy-config.cmake
Add the installation prefix of "Snappy" to CMAKE_PREFIX_PATH or set
"Snappy_DIR" to a directory containing one of the above files. If "Snappy"
provides a separate development package or SDK, be sure it has been
installed.
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:257 (find_package)
cmake_modules/ThirdpartyToolchain.cmake:1137 (resolve_dependency)
CMakeLists.txt:575 (include)
-- Could NOT find SnappyAlt (missing: Snappy_LIB Snappy_INCLUDE_DIR)
-- Building snappy from source
-- Building without OpenSSL support. Minimum OpenSSL version 1.0.2 required.
-- Checking for module 'thrift'
-- Package 'thrift', required by 'virtual:world', not found
-- Could NOT find Thrift: Found unsuitable version "", but required is at least "0.11.0" (found THRIFT_LIB-NOTFOUND)
-- Building Apache Thrift from source
CMake Warning at cmake_modules/FindRapidJSONAlt.cmake:25 (find_package):
By not providing "FindRapidJSON.cmake" in CMAKE_MODULE_PATH this project
has asked CMake to find a package configuration file provided by
"RapidJSON", but CMake did not find one.
Could not find a package configuration file provided by "RapidJSON"
(requested version 1.1.0) with any of the following names:
RapidJSONConfig.cmake
rapidjson-config.cmake
Add the installation prefix of "RapidJSON" to CMAKE_PREFIX_PATH or set
"RapidJSON_DIR" to a directory containing one of the above files. If
"RapidJSON" provides a separate development package or SDK, be sure it has
been installed.
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:257 (find_package)
cmake_modules/ThirdpartyToolchain.cmake:2189 (resolve_dependency)
CMakeLists.txt:575 (include)
-- Could NOT find RapidJSONAlt (missing: RAPIDJSON_INCLUDE_DIR) (Required is at least version "1.1.0")
-- Building RapidJSON from source
CMake Warning at cmake_modules/ThirdpartyToolchain.cmake:257 (find_package):
By not providing "Findxsimd.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "xsimd", but
CMake did not find one.
Could not find a package configuration file provided by "xsimd" (requested
version 8.1.0) with any of the following names:
xsimdConfig.cmake
xsimd-config.cmake
Add the installation prefix of "xsimd" to CMAKE_PREFIX_PATH or set
"xsimd_DIR" to a directory containing one of the above files. If "xsimd"
provides a separate development package or SDK, be sure it has been
installed.
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:2246 (resolve_dependency)
CMakeLists.txt:575 (include)
-- Building xsimd from source
CMake Warning at cmake_modules/Findlz4Alt.cmake:25 (find_package):
By not providing "Findlz4.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "lz4", but
CMake did not find one.
Could not find a package configuration file provided by "lz4" with any of
the following names:
lz4Config.cmake
lz4-config.cmake
Add the installation prefix of "lz4" to CMAKE_PREFIX_PATH or set "lz4_DIR"
to a directory containing one of the above files. If "lz4" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:257 (find_package)
cmake_modules/ThirdpartyToolchain.cmake:2354 (resolve_dependency)
CMakeLists.txt:575 (include)
-- Checking for module 'liblz4'
-- Package 'liblz4', required by 'virtual:world', not found
-- Could NOT find lz4Alt (missing: LZ4_LIB LZ4_INCLUDE_DIR)
-- Building lz4 from source
CMake Warning at cmake_modules/Findre2Alt.cmake:25 (find_package):
By not providing "Findre2.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "re2", but
CMake did not find one.
Could not find a package configuration file provided by "re2" with any of
the following names:
re2Config.cmake
re2-config.cmake
Add the installation prefix of "re2" to CMAKE_PREFIX_PATH or set "re2_DIR"
to a directory containing one of the above files. If "re2" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:257 (find_package)
cmake_modules/ThirdpartyToolchain.cmake:2483 (resolve_dependency)
CMakeLists.txt:575 (include)
-- Checking for module 're2'
-- Package 're2', required by 'virtual:world', not found
-- Could NOT find re2Alt (missing: RE2_LIB RE2_INCLUDE_DIR)
-- Building RE2 from source
-- Could NOT find utf8proc: Found unsuitable version "2.1.1", but required is at least "2.2.0" (found /usr/lib64/libutf8proc.so)
-- Building utf8proc from source
-- Found hdfs.h at: /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp/thirdparty/hadoop/include/hdfs.h
-- All bundled static libraries: Snappy::snappy-static;thrift::thrift;lz4::lz4;re2::re2;utf8proc::utf8proc
-- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2
-- CMAKE_CXX_FLAGS: -Wno-noexcept-type -fdiagnostics-color=always -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include
-- Creating bundled static library target arrow_bundled_dependencies at /tmp/rmt/release/libarrow_bundled_dependencies.a
-- ---------------------------------------------------------------------
-- Arrow version: 9.0.0
--
-- Build configuration summary:
-- Generator: Unix Makefiles
-- Build type: RELEASE
-- Source directory: /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp
-- Install prefix: /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/libarrow/arrow-9.0.0
--
-- Compile and link options:
--
-- ARROW_CXXFLAGS="" [default=""]
-- Compiler flags to append when compiling Arrow
-- ARROW_BUILD_STATIC=ON [default=ON]
-- Build static libraries
-- ARROW_BUILD_SHARED=OFF [default=ON]
-- Build shared libraries
-- ARROW_PACKAGE_KIND="" [default=""]
-- Arbitrary string that identifies the kind of package
-- (for informational purposes)
-- ARROW_GIT_ID="" [default=""]
-- The Arrow git commit id (if any)
-- ARROW_GIT_DESCRIPTION="" [default=""]
-- The Arrow git commit description (if any)
-- ARROW_NO_DEPRECATED_API=OFF [default=OFF]
-- Exclude deprecated APIs from build
-- ARROW_POSITION_INDEPENDENT_CODE=ON [default=ON]
-- Whether to create position-independent target
-- ARROW_USE_CCACHE=ON [default=ON]
-- Use ccache when compiling (if available)
-- ARROW_USE_LD_GOLD=OFF [default=OFF]
-- Use ld.gold for linking on Linux (if available)
-- ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF]
-- Use precompiled headers when compiling
-- ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512|NEON|DEFAULT]
-- Compile-time SIMD optimization level
-- ARROW_RUNTIME_SIMD_LEVEL=MAX [default=NONE|SSE4_2|AVX2|AVX512|MAX]
-- Max runtime SIMD optimization level
-- ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto]
-- Arm64 arch and extensions
-- ARROW_ALTIVEC=ON [default=ON]
-- Build with Altivec if compiler has support
-- ARROW_RPATH_ORIGIN=OFF [default=OFF]
-- Build Arrow libraries with RATH set to $ORIGIN
-- ARROW_INSTALL_NAME_RPATH=ON [default=ON]
-- Build Arrow libraries with install_name set to @rpath
-- ARROW_GGDB_DEBUG=ON [default=ON]
-- Pass -ggdb flag to debug builds
--
-- Test and benchmark options:
--
-- ARROW_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Arrow examples
-- ARROW_BUILD_TESTS=OFF [default=OFF]
-- Build the Arrow googletest unit tests
-- ARROW_ENABLE_TIMING_TESTS=ON [default=ON]
-- Enable timing-sensitive tests
-- ARROW_BUILD_INTEGRATION=OFF [default=OFF]
-- Build the Arrow integration test executables
-- ARROW_BUILD_BENCHMARKS=OFF [default=OFF]
-- Build the Arrow micro benchmarks
-- ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF]
-- Build the Arrow micro reference benchmarks
-- ARROW_BUILD_OPENMP_BENCHMARKS=OFF [default=OFF]
-- Build the Arrow benchmarks that rely on OpenMP
-- ARROW_BUILD_DETAILED_BENCHMARKS=OFF [default=OFF]
-- Build benchmarks that do a longer exploration of performance
-- ARROW_TEST_LINKAGE=static [default=shared|static]
-- Linkage of Arrow libraries with unit tests executables.
-- ARROW_FUZZING=OFF [default=OFF]
-- Build Arrow Fuzzing executables
-- ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF]
-- Enable unit tests which use large memory
--
-- Lint options:
--
-- ARROW_ONLY_LINT=OFF [default=OFF]
-- Only define the lint and check-format targets
-- ARROW_VERBOSE_LINT=OFF [default=OFF]
-- If off, 'quiet' flags will be passed to linting tools
-- ARROW_GENERATE_COVERAGE=OFF [default=OFF]
-- Build with C++ code coverage enabled
--
-- Checks options:
--
-- ARROW_TEST_MEMCHECK=OFF [default=OFF]
-- Run the test suite using valgrind --tool=memcheck
-- ARROW_USE_ASAN=OFF [default=OFF]
-- Enable Address Sanitizer checks
-- ARROW_USE_TSAN=OFF [default=OFF]
-- Enable Thread Sanitizer checks
-- ARROW_USE_UBSAN=OFF [default=OFF]
-- Enable Undefined Behavior sanitizer checks
--
-- Project component options:
--
-- ARROW_BUILD_UTILITIES=OFF [default=OFF]
-- Build Arrow commandline utilities
-- ARROW_COMPUTE=ON [default=OFF]
-- Build the Arrow Compute Modules
-- ARROW_CSV=ON [default=OFF]
-- Build the Arrow CSV Parser Module
-- ARROW_CUDA=OFF [default=OFF]
-- Build the Arrow CUDA extensions (requires CUDA toolkit)
-- ARROW_DATASET=ON [default=OFF]
-- Build the Arrow Dataset Modules
-- ARROW_SUBSTRAIT=OFF [default=OFF]
-- Build the Arrow Substrait Consumer Module
-- ARROW_FILESYSTEM=ON [default=OFF]
-- Build the Arrow Filesystem Layer
-- ARROW_FLIGHT=OFF [default=OFF]
-- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers)
-- ARROW_FLIGHT_SQL=OFF [default=OFF]
-- Build the Arrow Flight SQL extension
-- ARROW_GANDIVA=OFF [default=OFF]
-- Build the Gandiva libraries
-- ARROW_GCS=OFF [default=OFF]
-- Build Arrow with GCS support (requires the GCloud SDK for C++)
-- ARROW_HDFS=OFF [default=OFF]
-- Build the Arrow HDFS bridge
-- ARROW_IPC=ON [default=ON]
-- Build the Arrow IPC extensions
-- ARROW_JEMALLOC=OFF [default=ON]
-- Build the Arrow jemalloc-based allocator
-- ARROW_JNI=OFF [default=OFF]
-- Build the Arrow JNI lib
-- ARROW_JSON=ON [default=OFF]
-- Build Arrow with JSON support (requires RapidJSON)
-- ARROW_MIMALLOC=OFF [default=OFF]
-- Build the Arrow mimalloc-based allocator
-- ARROW_PARQUET=ON [default=OFF]
-- Build the Parquet libraries
-- ARROW_ORC=OFF [default=OFF]
-- Build the Arrow ORC adapter
-- ARROW_PLASMA=OFF [default=OFF]
-- Build the plasma object store along with Arrow
-- ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF]
-- Build the plasma object store java client
-- ARROW_PYTHON=OFF [default=OFF]
-- Build the Arrow CPython extensions
-- ARROW_S3=OFF [default=OFF]
-- Build Arrow with S3 support (requires the AWS SDK for C++)
-- ARROW_SKYHOOK=OFF [default=OFF]
-- Build the Skyhook libraries
-- ARROW_TENSORFLOW=OFF [default=OFF]
-- Build Arrow with TensorFlow support enabled
-- ARROW_TESTING=OFF [default=OFF]
-- Build the Arrow testing libraries
--
-- Thirdparty toolchain options:
--
-- ARROW_DEPENDENCY_SOURCE=AUTO [default=AUTO|BUNDLED|SYSTEM|CONDA|VCPKG|BREW]
-- Method to use for acquiring arrow's build dependencies
-- ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF]
-- Show output from ExternalProjects rather than just logging to files
-- ARROW_DEPENDENCY_USE_SHARED=ON [default=ON]
-- Link to shared libraries
-- ARROW_BOOST_USE_SHARED=OFF [default=ON]
-- Rely on Boost shared libraries where relevant
-- ARROW_BROTLI_USE_SHARED=ON [default=ON]
-- Rely on Brotli shared libraries where relevant
-- ARROW_BZ2_USE_SHARED=ON [default=ON]
-- Rely on Bz2 shared libraries where relevant
-- ARROW_GFLAGS_USE_SHARED=ON [default=ON]
-- Rely on GFlags shared libraries where relevant
-- ARROW_GRPC_USE_SHARED=ON [default=ON]
-- Rely on gRPC shared libraries where relevant
-- ARROW_JEMALLOC_USE_SHARED=ON [default=ON]
-- Rely on jemalloc shared libraries where relevant
-- ARROW_LZ4_USE_SHARED=ON [default=ON]
-- Rely on lz4 shared libraries where relevant
-- ARROW_OPENSSL_USE_SHARED=ON [default=ON]
-- Rely on OpenSSL shared libraries where relevant
-- ARROW_PROTOBUF_USE_SHARED=ON [default=ON]
-- Rely on Protocol Buffers shared libraries where relevant
-- ARROW_SNAPPY_USE_SHARED=ON [default=ON]
-- Rely on snappy shared libraries where relevant
-- ARROW_THRIFT_USE_SHARED=ON [default=ON]
-- Rely on thrift shared libraries where relevant
-- ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
-- Rely on utf8proc shared libraries where relevant
-- ARROW_ZSTD_USE_SHARED=ON [default=ON]
-- Rely on zstd shared libraries where relevant
-- ARROW_USE_GLOG=OFF [default=OFF]
-- Build libraries with glog support for pluggable logging
-- ARROW_WITH_BACKTRACE=ON [default=ON]
-- Build with backtrace support
-- ARROW_WITH_OPENTELEMETRY=OFF [default=OFF]
-- Build libraries with OpenTelemetry support for distributed tracing
-- ARROW_WITH_BROTLI=OFF [default=OFF]
-- Build with Brotli compression
-- ARROW_WITH_BZ2=OFF [default=OFF]
-- Build with BZ2 compression
-- ARROW_WITH_LZ4=ON [default=OFF]
-- Build with lz4 compression
-- ARROW_WITH_SNAPPY=ON [default=OFF]
-- Build with Snappy compression
-- ARROW_WITH_ZLIB=OFF [default=OFF]
-- Build with zlib compression
-- ARROW_WITH_ZSTD=OFF [default=OFF]
-- Build with zstd compression
-- ARROW_WITH_UCX=OFF [default=OFF]
-- Build with UCX transport for Arrow Flight
-- (only used if ARROW_FLIGHT is ON)
-- ARROW_WITH_UTF8PROC=ON [default=ON]
-- Build with support for Unicode properties using the utf8proc library
-- (only used if ARROW_COMPUTE is ON or ARROW_GANDIVA is ON)
-- ARROW_WITH_RE2=ON [default=ON]
-- Build with support for regular expressions using the re2 library
-- (only used if ARROW_COMPUTE or ARROW_GANDIVA is ON)
--
-- Parquet options:
--
-- PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF]
-- Depend only on Thirdparty headers to build libparquet.
-- Always OFF if building binaries
-- PARQUET_BUILD_EXECUTABLES=OFF [default=OFF]
-- Build the Parquet executable CLI tools. Requires static libraries to be built.
-- PARQUET_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Parquet examples. Requires static libraries to be built.
-- PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF]
-- Build support for encryption. Fail if OpenSSL is not found
--
-- Gandiva options:
--
-- ARROW_GANDIVA_JAVA=OFF [default=OFF]
-- Build the Gandiva JNI wrappers
-- ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF]
-- Include -static-libstdc++ -static-libgcc when linking with
-- Gandiva static libraries
-- ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""]
-- Compiler flags to append when pre-compiling Gandiva operations
--
-- Advanced developer options:
--
-- ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF]
-- Compile with extra error context (line numbers, code)
-- ARROW_OPTIONAL_INSTALL=OFF [default=OFF]
-- If enabled install ONLY targets that have already been built. Please be
-- advised that if this is enabled 'install' will fail silently on components
-- that have not been built
-- Outputting build configuration summary to /tmp/rmt/cmake_summary.json
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/rmt
+ /bin/cmake --build . --target install
[ 0%] Creating directories for 'snappy_ep'
[ 1%] Creating directories for 'utf8proc_ep'
[ 1%] Performing download step (download, verify and extract) for 'snappy_ep'
[ 1%] Performing download step (download, verify and extract) for 'utf8proc_ep'
-- utf8proc_ep download command succeeded. See also /tmp/rmt/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-download-*.log
[ 1%] No update step for 'utf8proc_ep'
-- snappy_ep download command succeeded. See also /tmp/rmt/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-download-*.log
[ 1%] No patch step for 'utf8proc_ep'
[ 1%] No update step for 'snappy_ep'
[ 2%] Performing configure step for 'utf8proc_ep'
[ 2%] No patch step for 'snappy_ep'
[ 2%] Performing configure step for 'snappy_ep'
-- utf8proc_ep configure command succeeded. See also /tmp/rmt/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-configure-*.log
[ 2%] Performing build step for 'utf8proc_ep'
-- utf8proc_ep build command succeeded. See also /tmp/rmt/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-build-*.log
[ 2%] Performing install step for 'utf8proc_ep'
-- utf8proc_ep install command succeeded. See also /tmp/rmt/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-install-*.log
[ 2%] Completed 'utf8proc_ep'
[ 2%] Built target utf8proc_ep
[ 2%] Creating directories for 'thrift_ep'
[ 3%] Performing download step (download, verify and extract) for 'thrift_ep'
-- thrift_ep download command succeeded. See also /tmp/rmt/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log
[ 4%] No update step for 'thrift_ep'
[ 4%] No patch step for 'thrift_ep'
[ 4%] Performing configure step for 'thrift_ep'
-- snappy_ep configure command succeeded. See also /tmp/rmt/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-configure-*.log
[ 5%] Performing build step for 'snappy_ep'
-- snappy_ep build command succeeded. See also /tmp/rmt/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-build-*.log
[ 6%] Performing install step for 'snappy_ep'
-- snappy_ep install command succeeded. See also /tmp/rmt/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-install-*.log
[ 6%] Completed 'snappy_ep'
[ 6%] Built target snappy_ep
[ 6%] Creating directories for 'rapidjson_ep'
[ 7%] Performing download step (download, verify and extract) for 'rapidjson_ep'
-- rapidjson_ep download command succeeded. See also /tmp/rmt/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log
[ 8%] No update step for 'rapidjson_ep'
[ 8%] No patch step for 'rapidjson_ep'
[ 8%] Performing configure step for 'rapidjson_ep'
-- rapidjson_ep configure command succeeded. See also /tmp/rmt/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log
[ 8%] Performing build step for 'rapidjson_ep'
-- rapidjson_ep build command succeeded. See also /tmp/rmt/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log
[ 8%] Performing install step for 'rapidjson_ep'
-- rapidjson_ep install command succeeded. See also /tmp/rmt/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log
[ 9%] Completed 'rapidjson_ep'
[ 9%] Built target rapidjson_ep
[ 9%] Creating directories for 'lz4_ep'
[ 9%] Performing download step (download, verify and extract) for 'lz4_ep'
-- lz4_ep download command succeeded. See also /tmp/rmt/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-download-*.log
[ 9%] Performing update step for 'lz4_ep'
[ 10%] No patch step for 'lz4_ep'
[ 11%] No configure step for 'lz4_ep'
[ 11%] Performing build step for 'lz4_ep'
-- thrift_ep configure command succeeded. See also /tmp/rmt/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure-*.log
[ 11%] Performing build step for 'thrift_ep'
-- lz4_ep build command succeeded. See also /tmp/rmt/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-build-*.log
[ 11%] No install step for 'lz4_ep'
[ 11%] Completed 'lz4_ep'
[ 11%] Built target lz4_ep
[ 11%] Creating directories for 'xsimd_ep'
[ 11%] Performing download step (download, verify and extract) for 'xsimd_ep'
-- xsimd_ep download command succeeded. See also /tmp/rmt/src/xsimd_ep-stamp/xsimd_ep-download-*.log
[ 12%] No update step for 'xsimd_ep'
[ 12%] No patch step for 'xsimd_ep'
[ 12%] Performing configure step for 'xsimd_ep'
-- xsimd_ep configure command succeeded. See also /tmp/rmt/src/xsimd_ep-stamp/xsimd_ep-configure-*.log
[ 13%] Performing build step for 'xsimd_ep'
-- xsimd_ep build command succeeded. See also /tmp/rmt/src/xsimd_ep-stamp/xsimd_ep-build-*.log
[ 14%] Performing install step for 'xsimd_ep'
-- xsimd_ep install command succeeded. See also /tmp/rmt/src/xsimd_ep-stamp/xsimd_ep-install-*.log
[ 14%] Completed 'xsimd_ep'
[ 14%] Built target xsimd_ep
[ 14%] Creating directories for 're2_ep'
[ 14%] Performing download step (download, verify and extract) for 're2_ep'
-- re2_ep download command succeeded. See also /tmp/rmt/re2_ep-prefix/src/re2_ep-stamp/re2_ep-download-*.log
[ 14%] No update step for 're2_ep'
[ 15%] No patch step for 're2_ep'
[ 16%] Performing configure step for 're2_ep'
-- re2_ep configure command succeeded. See also /tmp/rmt/re2_ep-prefix/src/re2_ep-stamp/re2_ep-configure-*.log
[ 16%] Performing build step for 're2_ep'
-- thrift_ep build command succeeded. See also /tmp/rmt/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-build-*.log
[ 16%] Performing install step for 'thrift_ep'
-- thrift_ep install command succeeded. See also /tmp/rmt/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-install-*.log
[ 17%] Completed 'thrift_ep'
[ 17%] Built target thrift_ep
-- re2_ep build command succeeded. See also /tmp/rmt/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-*.log
[ 17%] Performing install step for 're2_ep'
-- re2_ep install command succeeded. See also /tmp/rmt/re2_ep-prefix/src/re2_ep-stamp/re2_ep-install-*.log
[ 17%] Completed 're2_ep'
[ 17%] Built target re2_ep
[ 17%] Built target toolchain
[ 17%] Bundling /tmp/rmt/release/libarrow_bundled_dependencies.a
[ 17%] Built target arrow_dependencies
[ 18%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/array/array_base.cc.o
In file included from /opt/rh/gcc-toolset-11/root/usr/include/c++/11/ext/string_conversions.h:41,
from /opt/rh/gcc-toolset-11/root/usr/include/c++/11/bits/basic_string.h:6608,
from /opt/rh/gcc-toolset-11/root/usr/include/c++/11/string:55,
from /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp/src/arrow/array/array_base.h:23,
from /tmp/Rtmp6bSuH3/R.INSTALL40fe61c13650d/arrow/tools/cpp/src/arrow/array/array_base.cc:18:
/opt/rh/gcc-toolset-11/root/usr/include/c++/11/cstdlib:75:15: fatal error: stdlib.h: No such file or directory
75 | #include_next <stdlib.h>
| ^~~~~~~~~~
compilation terminated.
make[2]: *** [src/arrow/CMakeFiles/arrow_objlib.dir/build.make:76: src/arrow/CMakeFiles/arrow_objlib.dir/array/array_base.cc.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:1361: src/arrow/CMakeFiles/arrow_objlib.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 18%] Built target arrow_bundled_dependencies
gmake: *** [Makefile:146: all] Error 2
**** Error building Arrow C++.
------------------------- NOTE ---------------------------
There was an issue preparing the Arrow C++ libraries.
See https://arrow.apache.org/docs/r/articles/install.html
---------------------------------------------------------
ERROR: configuration failed for package ‘arrow’
* removing ‘/usr/lib64/R/library/arrow’
--
This message was sent by Atlassian Jira
(v8.20.10#820010)