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Posted to users@jena.apache.org by Alex Shkop <as...@sciforce.solutions> on 2016/06/17 15:25:23 UTC
Upgrade to Jena 3.1.0 breaks the query
Hello
I've upgraded to Jena 3.1.0 and some of my SPARQL queries now crash with
NullPointerException. The simplest query that causes a crash looks like
this:
SELECT ?s
WHERE {
?s ?p ?o .
?s <http://www.w3.org/2000/01/rdf-schema#member> ?m .
FILTER (!bound(?test))
}
Here's the stack trace:
java.lang.NullPointerException
at
org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunctionProcedure(TransformFilterPlacement.java:453)
at
org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunction(TransformFilterPlacement.java:432)
at
org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:200)
at
org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:159)
at
org.apache.jena.sparql.algebra.TransformWrapper.transform(TransformWrapper.java:59)
at org.apache.jena.sparql.algebra.op.OpFilter.apply(OpFilter.java:100)
at
org.apache.jena.sparql.algebra.Transformer$ApplyTransformVisitor.visitFilter(Transformer.java:401)
at
org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
at org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
at
org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:85)
at
org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visitFilter(OpWalker.java:91)
at
org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
at org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
at
org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:83)
at
org.apache.jena.sparql.algebra.OpVisitorByType.visitModifer(OpVisitorByType.java:42)
at
org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:158)
at org.apache.jena.sparql.algebra.op.OpProject.visit(OpProject.java:47)
at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:43)
at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:38)
at
org.apache.jena.sparql.algebra.Transformer.applyTransformation(Transformer.java:147)
at
org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:140)
at
org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:129)
at
org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:123)
at
org.apache.jena.sparql.algebra.Transformer.transform(Transformer.java:56)
at
org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:86)
at
org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:68)
at
org.apache.jena.sparql.algebra.optimize.Optimize.apply(Optimize.java:282)
at
org.apache.jena.sparql.algebra.optimize.Optimize.rewrite(Optimize.java:225)
at
org.apache.jena.sparql.algebra.optimize.Optimize.optimize(Optimize.java:78)
at org.apache.jena.sparql.algebra.Algebra.optimize(Algebra.java:65)
at
org.apache.jena.sparql.engine.main.QueryEngineMain.modifyOp(QueryEngineMain.java:67)
at
org.apache.jena.tdb.solver.QueryEngineTDB.modifyOp(QueryEngineTDB.java:88)
at
org.apache.jena.sparql.engine.QueryEngineBase.createPlan(QueryEngineBase.java:101)
at
org.apache.jena.sparql.engine.QueryEngineBase.getPlan(QueryEngineBase.java:87)
at
org.apache.jena.tdb.solver.QueryEngineTDB$QueryEngineFactoryTDB.create(QueryEngineTDB.java:169)
at
org.apache.jena.sparql.engine.QueryEngineFactoryWrapper.create(QueryEngineFactoryWrapper.java:50)
at
org.apache.jena.sparql.engine.QueryExecutionBase.getPlan(QueryExecutionBase.java:524)
at
org.apache.jena.sparql.engine.QueryExecutionBase.startQueryIterator(QueryExecutionBase.java:472)
at
org.apache.jena.sparql.engine.QueryExecutionBase.execResultSet(QueryExecutionBase.java:511)
at
org.apache.jena.sparql.engine.QueryExecutionBase.execSelect(QueryExecutionBase.java:172)
at
org.apache.jena.fuseki.servlets.SPARQL_Query.executeQuery(SPARQL_Query.java:314)
at
org.apache.jena.fuseki.servlets.SPARQL_Query.execute(SPARQL_Query.java:270)
at
org.apache.jena.fuseki.servlets.SPARQL_Query.executeWithParameter(SPARQL_Query.java:228)
at
org.apache.jena.fuseki.servlets.SPARQL_Query.perform(SPARQL_Query.java:213)
at
org.apache.jena.fuseki.servlets.ActionSPARQL.executeLifecycle(ActionSPARQL.java:134)
at
org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeRequest(SPARQL_UberServlet.java:354)
at
org.apache.jena.fuseki.servlets.SPARQL_UberServlet.serviceDispatch(SPARQL_UberServlet.java:315)
at
org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeAction(SPARQL_UberServlet.java:271)
at
org.apache.jena.fuseki.servlets.ActionSPARQL.execCommonWorker(ActionSPARQL.java:85)
at
org.apache.jena.fuseki.servlets.ActionBase.doCommon(ActionBase.java:81)
at
org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:72)
at
org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
at
org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61)
at
org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
at
org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
at
org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
at
org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
at
org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449)
at
org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365)
at
org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90)
at
org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83)
at
org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383)
at
org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362)
at
org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
at
org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
at
org.apache.jena.fuseki.servlets.CrossOriginFilter.handle(CrossOriginFilter.java:285)
at
org.apache.jena.fuseki.servlets.CrossOriginFilter.doFilter(CrossOriginFilter.java:248)
at
org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
at
org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:581)
at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
at
org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
at
org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
at
org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1156)
at
org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)
at
org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
at
org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1088)
at
org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
at
org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:119)
at org.eclipse.jetty.server.Server.handle(Server.java:517)
at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:306)
at
org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:242)
at
org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:245)
at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)
at
org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:75)
at
org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceAndRun(ExecuteProduceConsume.java:213)
at
org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:147)
at
org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:654)
at
org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:572)
at java.lang.Thread.run(Thread.java:745)
I will appreciate any help. Maybe this is a regression or on the
contrary something is wrong with the query and Jena works correctly now.
Best regards,
Alex Shkop
Re: Upgrade to Jena 3.1.0 breaks the query
Posted by Andy Seaborne <an...@apache.org>.
On 21/06/16 12:07, Alex Shkop wrote:
> Thank, Andy. The workaround fixed the problem in my environment.
Good to know that.
The next snapshot dev build should have a proper fix.
Andy
>
> Alex
>
> On 21.06.16 14:01, Andy Seaborne wrote:
>> Alex,
>>
>> Thanks - the key point here is TDB - it follows a slightly different
>> path through the code.
>>
>> https://issues.apache.org/jira/browse/JENA-1198
>>
>> The best workaround for Fuseki I came up with is to add a context
>> setting to the dataset:
>>
>> :tdb_dataset_readwrite
>> a tdb:DatasetTDB ;
>> tdb:location "/fuseki/databases/test" ;
>> # Fuseki 2.4.0 only - remove for later versions.
>> ja:context [ ja:cxtName "arq:optFilterPlacementBGP" ;
>> ja:cxtValue "true" ] ;
>> .
>>
>> which is something you should remove at the next upgrade and also test
>> in your environment.
>>
>> Andy
>>
>> On 21/06/16 07:24, Alex Shkop wrote:
>>> Hi,
>>>
>>> I'm deploying Fuseki with docker. I'm using a container identical to
>>> that one https://hub.docker.com/r/stain/jena-fuseki/, but with Fuseki
>>> 2.4.0. And I can reproduce an issue with this simple assembler file:
>>>
>>> @prefix : <http://base/#> .
>>> @prefix tdb: <http://jena.hpl.hp.com/2008/tdb#> .
>>> @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
>>> @prefix ja: <http://jena.hpl.hp.com/2005/11/Assembler#> .
>>> @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
>>> @prefix fuseki: <http://jena.apache.org/fuseki#> .
>>> @prefix text: <http://jena.apache.org/text#> .
>>>
>>> @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
>>> @prefix schema: <http://schema.org/> .
>>>
>>>
>>> [] ja:loadClass "com.hp.hpl.jena.tdb.TDB" .
>>> tdb:DatasetTDB rdfs:subClassOf ja:RDFDataset .
>>> tdb:GraphTDB rdfs:subClassOf ja:Model .
>>
>> Unrelated:
>> These 3 triples are no longer necessary
>>
>>>
>>>
>>> # Here we define the actual dataset
>>> :tdb_dataset_readwrite
>>> a tdb:DatasetTDB ;
>>> tdb:location "/fuseki/databases/test" .
>>>
>>>
>>>
>>>
>>> :service_tdb_all a fuseki:Service ;
>>> rdfs:label "TDB test" ;
>>> fuseki:dataset :tdb_dataset_readwrite ;
>>> fuseki:name "test" ;
>>> fuseki:serviceQuery "query" , "sparql" ;
>>> fuseki:serviceReadGraphStore "get" ;
>>> fuseki:serviceReadWriteGraphStore
>>> "data" ;
>>> fuseki:serviceUpdate "update" ;
>>> fuseki:serviceUpload "upload" .
>>>
>>> Thanks,
>>> Alex
>>>
>>> On 17.06.16 19:54, Andy Seaborne wrote:
>>>> Hi,
>>>>
>>>> I can't reproduce this with Fuseki 2.4.0 - could explain your Fuseki
>>>> setup please?
>>>>
>>>> Andy
>>>>
>>>>
>>>>
>>>> On 17/06/16 16:25, Alex Shkop wrote:
>>>>> Hello
>>>>>
>>>>> I've upgraded to Jena 3.1.0 and some of my SPARQL queries now crash
>>>>> with
>>>>> NullPointerException. The simplest query that causes a crash looks
>>>>> like
>>>>> this:
>>>>>
>>>>> SELECT ?s
>>>>> WHERE {
>>>>> ?s ?p ?o .
>>>>> ?s <http://www.w3.org/2000/01/rdf-schema#member> ?m .
>>>>> FILTER (!bound(?test))
>>>>> }
>>>>>
>>>>> Here's the stack trace:
>>>>> java.lang.NullPointerException
>>>>> at
>>>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunctionProcedure(TransformFilterPlacement.java:453)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunction(TransformFilterPlacement.java:432)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:200)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:159)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.TransformWrapper.transform(TransformWrapper.java:59)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.op.OpFilter.apply(OpFilter.java:100)
>>>>> at
>>>>> org.apache.jena.sparql.algebra.Transformer$ApplyTransformVisitor.visitFilter(Transformer.java:401)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
>>>>> at
>>>>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:85)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visitFilter(OpWalker.java:91)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
>>>>> at
>>>>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:83)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.OpVisitorByType.visitModifer(OpVisitorByType.java:42)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:158)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.op.OpProject.visit(OpProject.java:47)
>>>>> at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:43)
>>>>> at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:38)
>>>>> at
>>>>> org.apache.jena.sparql.algebra.Transformer.applyTransformation(Transformer.java:147)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:140)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:129)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:123)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.Transformer.transform(Transformer.java:56)
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:86)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:68)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.optimize.Optimize.apply(Optimize.java:282)
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.optimize.Optimize.rewrite(Optimize.java:225)
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.optimize.Optimize.optimize(Optimize.java:78)
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.algebra.Algebra.optimize(Algebra.java:65)
>>>>> at
>>>>> org.apache.jena.sparql.engine.main.QueryEngineMain.modifyOp(QueryEngineMain.java:67)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.tdb.solver.QueryEngineTDB.modifyOp(QueryEngineTDB.java:88)
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.engine.QueryEngineBase.createPlan(QueryEngineBase.java:101)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.engine.QueryEngineBase.getPlan(QueryEngineBase.java:87)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.tdb.solver.QueryEngineTDB$QueryEngineFactoryTDB.create(QueryEngineTDB.java:169)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.engine.QueryEngineFactoryWrapper.create(QueryEngineFactoryWrapper.java:50)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.engine.QueryExecutionBase.getPlan(QueryExecutionBase.java:524)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.engine.QueryExecutionBase.startQueryIterator(QueryExecutionBase.java:472)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.engine.QueryExecutionBase.execResultSet(QueryExecutionBase.java:511)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.sparql.engine.QueryExecutionBase.execSelect(QueryExecutionBase.java:172)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.SPARQL_Query.executeQuery(SPARQL_Query.java:314)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.SPARQL_Query.execute(SPARQL_Query.java:270)
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.SPARQL_Query.executeWithParameter(SPARQL_Query.java:228)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.SPARQL_Query.perform(SPARQL_Query.java:213)
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.ActionSPARQL.executeLifecycle(ActionSPARQL.java:134)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeRequest(SPARQL_UberServlet.java:354)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.serviceDispatch(SPARQL_UberServlet.java:315)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeAction(SPARQL_UberServlet.java:271)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.ActionSPARQL.execCommonWorker(ActionSPARQL.java:85)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.ActionBase.doCommon(ActionBase.java:81)
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:72)
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.CrossOriginFilter.handle(CrossOriginFilter.java:285)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.apache.jena.fuseki.servlets.CrossOriginFilter.doFilter(CrossOriginFilter.java:248)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:581)
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1156)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1088)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:119)
>>>>>
>>>>>
>>>>>
>>>>> at org.eclipse.jetty.server.Server.handle(Server.java:517)
>>>>> at
>>>>> org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:306)
>>>>> at
>>>>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:242)
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:245)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)
>>>>> at
>>>>> org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:75)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceAndRun(ExecuteProduceConsume.java:213)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:147)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:654)
>>>>>
>>>>>
>>>>>
>>>>> at
>>>>> org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:572)
>>>>>
>>>>>
>>>>>
>>>>> at java.lang.Thread.run(Thread.java:745)
>>>>>
>>>>> I will appreciate any help. Maybe this is a regression or on the
>>>>> contrary something is wrong with the query and Jena works correctly
>>>>> now.
>>>>>
>>>>> Best regards,
>>>>> Alex Shkop
>>>>>
>>>>
>>>
>>
>
Re: Upgrade to Jena 3.1.0 breaks the query
Posted by Alex Shkop <as...@sciforce.solutions>.
Thank, Andy. The workaround fixed the problem in my environment.
Alex
On 21.06.16 14:01, Andy Seaborne wrote:
> Alex,
>
> Thanks - the key point here is TDB - it follows a slightly different
> path through the code.
>
> https://issues.apache.org/jira/browse/JENA-1198
>
> The best workaround for Fuseki I came up with is to add a context
> setting to the dataset:
>
> :tdb_dataset_readwrite
> a tdb:DatasetTDB ;
> tdb:location "/fuseki/databases/test" ;
> # Fuseki 2.4.0 only - remove for later versions.
> ja:context [ ja:cxtName "arq:optFilterPlacementBGP" ;
> ja:cxtValue "true" ] ;
> .
>
> which is something you should remove at the next upgrade and also test
> in your environment.
>
> Andy
>
> On 21/06/16 07:24, Alex Shkop wrote:
>> Hi,
>>
>> I'm deploying Fuseki with docker. I'm using a container identical to
>> that one https://hub.docker.com/r/stain/jena-fuseki/, but with Fuseki
>> 2.4.0. And I can reproduce an issue with this simple assembler file:
>>
>> @prefix : <http://base/#> .
>> @prefix tdb: <http://jena.hpl.hp.com/2008/tdb#> .
>> @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
>> @prefix ja: <http://jena.hpl.hp.com/2005/11/Assembler#> .
>> @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
>> @prefix fuseki: <http://jena.apache.org/fuseki#> .
>> @prefix text: <http://jena.apache.org/text#> .
>>
>> @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
>> @prefix schema: <http://schema.org/> .
>>
>>
>> [] ja:loadClass "com.hp.hpl.jena.tdb.TDB" .
>> tdb:DatasetTDB rdfs:subClassOf ja:RDFDataset .
>> tdb:GraphTDB rdfs:subClassOf ja:Model .
>
> Unrelated:
> These 3 triples are no longer necessary
>
>>
>>
>> # Here we define the actual dataset
>> :tdb_dataset_readwrite
>> a tdb:DatasetTDB ;
>> tdb:location "/fuseki/databases/test" .
>>
>>
>>
>>
>> :service_tdb_all a fuseki:Service ;
>> rdfs:label "TDB test" ;
>> fuseki:dataset :tdb_dataset_readwrite ;
>> fuseki:name "test" ;
>> fuseki:serviceQuery "query" , "sparql" ;
>> fuseki:serviceReadGraphStore "get" ;
>> fuseki:serviceReadWriteGraphStore
>> "data" ;
>> fuseki:serviceUpdate "update" ;
>> fuseki:serviceUpload "upload" .
>>
>> Thanks,
>> Alex
>>
>> On 17.06.16 19:54, Andy Seaborne wrote:
>>> Hi,
>>>
>>> I can't reproduce this with Fuseki 2.4.0 - could explain your Fuseki
>>> setup please?
>>>
>>> Andy
>>>
>>>
>>>
>>> On 17/06/16 16:25, Alex Shkop wrote:
>>>> Hello
>>>>
>>>> I've upgraded to Jena 3.1.0 and some of my SPARQL queries now crash
>>>> with
>>>> NullPointerException. The simplest query that causes a crash looks
>>>> like
>>>> this:
>>>>
>>>> SELECT ?s
>>>> WHERE {
>>>> ?s ?p ?o .
>>>> ?s <http://www.w3.org/2000/01/rdf-schema#member> ?m .
>>>> FILTER (!bound(?test))
>>>> }
>>>>
>>>> Here's the stack trace:
>>>> java.lang.NullPointerException
>>>> at
>>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunctionProcedure(TransformFilterPlacement.java:453)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunction(TransformFilterPlacement.java:432)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:200)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:159)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.TransformWrapper.transform(TransformWrapper.java:59)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.op.OpFilter.apply(OpFilter.java:100)
>>>> at
>>>> org.apache.jena.sparql.algebra.Transformer$ApplyTransformVisitor.visitFilter(Transformer.java:401)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
>>>> at
>>>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:85)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visitFilter(OpWalker.java:91)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
>>>> at
>>>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:83)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.OpVisitorByType.visitModifer(OpVisitorByType.java:42)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:158)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.op.OpProject.visit(OpProject.java:47)
>>>> at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:43)
>>>> at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:38)
>>>> at
>>>> org.apache.jena.sparql.algebra.Transformer.applyTransformation(Transformer.java:147)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:140)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:129)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:123)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.Transformer.transform(Transformer.java:56)
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:86)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:68)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.optimize.Optimize.apply(Optimize.java:282)
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.optimize.Optimize.rewrite(Optimize.java:225)
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.optimize.Optimize.optimize(Optimize.java:78)
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.algebra.Algebra.optimize(Algebra.java:65)
>>>> at
>>>> org.apache.jena.sparql.engine.main.QueryEngineMain.modifyOp(QueryEngineMain.java:67)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.tdb.solver.QueryEngineTDB.modifyOp(QueryEngineTDB.java:88)
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.engine.QueryEngineBase.createPlan(QueryEngineBase.java:101)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.engine.QueryEngineBase.getPlan(QueryEngineBase.java:87)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.tdb.solver.QueryEngineTDB$QueryEngineFactoryTDB.create(QueryEngineTDB.java:169)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.engine.QueryEngineFactoryWrapper.create(QueryEngineFactoryWrapper.java:50)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.engine.QueryExecutionBase.getPlan(QueryExecutionBase.java:524)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.engine.QueryExecutionBase.startQueryIterator(QueryExecutionBase.java:472)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.engine.QueryExecutionBase.execResultSet(QueryExecutionBase.java:511)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.sparql.engine.QueryExecutionBase.execSelect(QueryExecutionBase.java:172)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.SPARQL_Query.executeQuery(SPARQL_Query.java:314)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.SPARQL_Query.execute(SPARQL_Query.java:270)
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.SPARQL_Query.executeWithParameter(SPARQL_Query.java:228)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.SPARQL_Query.perform(SPARQL_Query.java:213)
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.ActionSPARQL.executeLifecycle(ActionSPARQL.java:134)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeRequest(SPARQL_UberServlet.java:354)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.serviceDispatch(SPARQL_UberServlet.java:315)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeAction(SPARQL_UberServlet.java:271)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.ActionSPARQL.execCommonWorker(ActionSPARQL.java:85)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.ActionBase.doCommon(ActionBase.java:81)
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:72)
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.CrossOriginFilter.handle(CrossOriginFilter.java:285)
>>>>
>>>>
>>>>
>>>> at
>>>> org.apache.jena.fuseki.servlets.CrossOriginFilter.doFilter(CrossOriginFilter.java:248)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:581)
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1156)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1088)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:119)
>>>>
>>>>
>>>>
>>>> at org.eclipse.jetty.server.Server.handle(Server.java:517)
>>>> at
>>>> org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:306)
>>>> at
>>>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:242)
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:245)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)
>>>> at
>>>> org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:75)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceAndRun(ExecuteProduceConsume.java:213)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:147)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:654)
>>>>
>>>>
>>>>
>>>> at
>>>> org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:572)
>>>>
>>>>
>>>>
>>>> at java.lang.Thread.run(Thread.java:745)
>>>>
>>>> I will appreciate any help. Maybe this is a regression or on the
>>>> contrary something is wrong with the query and Jena works correctly
>>>> now.
>>>>
>>>> Best regards,
>>>> Alex Shkop
>>>>
>>>
>>
>
Re: Upgrade to Jena 3.1.0 breaks the query
Posted by Andy Seaborne <an...@apache.org>.
Alex,
Thanks - the key point here is TDB - it follows a slightly different
path through the code.
https://issues.apache.org/jira/browse/JENA-1198
The best workaround for Fuseki I came up with is to add a context
setting to the dataset:
:tdb_dataset_readwrite
a tdb:DatasetTDB ;
tdb:location "/fuseki/databases/test" ;
# Fuseki 2.4.0 only - remove for later versions.
ja:context [ ja:cxtName "arq:optFilterPlacementBGP" ;
ja:cxtValue "true" ] ;
.
which is something you should remove at the next upgrade and also test
in your environment.
Andy
On 21/06/16 07:24, Alex Shkop wrote:
> Hi,
>
> I'm deploying Fuseki with docker. I'm using a container identical to
> that one https://hub.docker.com/r/stain/jena-fuseki/, but with Fuseki
> 2.4.0. And I can reproduce an issue with this simple assembler file:
>
> @prefix : <http://base/#> .
> @prefix tdb: <http://jena.hpl.hp.com/2008/tdb#> .
> @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
> @prefix ja: <http://jena.hpl.hp.com/2005/11/Assembler#> .
> @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
> @prefix fuseki: <http://jena.apache.org/fuseki#> .
> @prefix text: <http://jena.apache.org/text#> .
>
> @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
> @prefix schema: <http://schema.org/> .
>
>
> [] ja:loadClass "com.hp.hpl.jena.tdb.TDB" .
> tdb:DatasetTDB rdfs:subClassOf ja:RDFDataset .
> tdb:GraphTDB rdfs:subClassOf ja:Model .
Unrelated:
These 3 triples are no longer necessary
>
>
> # Here we define the actual dataset
> :tdb_dataset_readwrite
> a tdb:DatasetTDB ;
> tdb:location "/fuseki/databases/test" .
>
>
>
>
> :service_tdb_all a fuseki:Service ;
> rdfs:label "TDB test" ;
> fuseki:dataset :tdb_dataset_readwrite ;
> fuseki:name "test" ;
> fuseki:serviceQuery "query" , "sparql" ;
> fuseki:serviceReadGraphStore "get" ;
> fuseki:serviceReadWriteGraphStore
> "data" ;
> fuseki:serviceUpdate "update" ;
> fuseki:serviceUpload "upload" .
>
> Thanks,
> Alex
>
> On 17.06.16 19:54, Andy Seaborne wrote:
>> Hi,
>>
>> I can't reproduce this with Fuseki 2.4.0 - could explain your Fuseki
>> setup please?
>>
>> Andy
>>
>>
>>
>> On 17/06/16 16:25, Alex Shkop wrote:
>>> Hello
>>>
>>> I've upgraded to Jena 3.1.0 and some of my SPARQL queries now crash with
>>> NullPointerException. The simplest query that causes a crash looks like
>>> this:
>>>
>>> SELECT ?s
>>> WHERE {
>>> ?s ?p ?o .
>>> ?s <http://www.w3.org/2000/01/rdf-schema#member> ?m .
>>> FILTER (!bound(?test))
>>> }
>>>
>>> Here's the stack trace:
>>> java.lang.NullPointerException
>>> at
>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunctionProcedure(TransformFilterPlacement.java:453)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunction(TransformFilterPlacement.java:432)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:200)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:159)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.TransformWrapper.transform(TransformWrapper.java:59)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.op.OpFilter.apply(OpFilter.java:100)
>>> at
>>> org.apache.jena.sparql.algebra.Transformer$ApplyTransformVisitor.visitFilter(Transformer.java:401)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
>>> at
>>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:85)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visitFilter(OpWalker.java:91)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
>>> at
>>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:83)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.OpVisitorByType.visitModifer(OpVisitorByType.java:42)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:158)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.op.OpProject.visit(OpProject.java:47)
>>> at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:43)
>>> at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:38)
>>> at
>>> org.apache.jena.sparql.algebra.Transformer.applyTransformation(Transformer.java:147)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:140)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:129)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:123)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.Transformer.transform(Transformer.java:56)
>>>
>>> at
>>> org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:86)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:68)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.algebra.optimize.Optimize.apply(Optimize.java:282)
>>>
>>> at
>>> org.apache.jena.sparql.algebra.optimize.Optimize.rewrite(Optimize.java:225)
>>>
>>> at
>>> org.apache.jena.sparql.algebra.optimize.Optimize.optimize(Optimize.java:78)
>>>
>>> at org.apache.jena.sparql.algebra.Algebra.optimize(Algebra.java:65)
>>> at
>>> org.apache.jena.sparql.engine.main.QueryEngineMain.modifyOp(QueryEngineMain.java:67)
>>>
>>>
>>> at
>>> org.apache.jena.tdb.solver.QueryEngineTDB.modifyOp(QueryEngineTDB.java:88)
>>>
>>> at
>>> org.apache.jena.sparql.engine.QueryEngineBase.createPlan(QueryEngineBase.java:101)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.engine.QueryEngineBase.getPlan(QueryEngineBase.java:87)
>>>
>>>
>>> at
>>> org.apache.jena.tdb.solver.QueryEngineTDB$QueryEngineFactoryTDB.create(QueryEngineTDB.java:169)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.engine.QueryEngineFactoryWrapper.create(QueryEngineFactoryWrapper.java:50)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.engine.QueryExecutionBase.getPlan(QueryExecutionBase.java:524)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.engine.QueryExecutionBase.startQueryIterator(QueryExecutionBase.java:472)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.engine.QueryExecutionBase.execResultSet(QueryExecutionBase.java:511)
>>>
>>>
>>> at
>>> org.apache.jena.sparql.engine.QueryExecutionBase.execSelect(QueryExecutionBase.java:172)
>>>
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.SPARQL_Query.executeQuery(SPARQL_Query.java:314)
>>>
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.SPARQL_Query.execute(SPARQL_Query.java:270)
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.SPARQL_Query.executeWithParameter(SPARQL_Query.java:228)
>>>
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.SPARQL_Query.perform(SPARQL_Query.java:213)
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.ActionSPARQL.executeLifecycle(ActionSPARQL.java:134)
>>>
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeRequest(SPARQL_UberServlet.java:354)
>>>
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.serviceDispatch(SPARQL_UberServlet.java:315)
>>>
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeAction(SPARQL_UberServlet.java:271)
>>>
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.ActionSPARQL.execCommonWorker(ActionSPARQL.java:85)
>>>
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.ActionBase.doCommon(ActionBase.java:81)
>>> at
>>> org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:72)
>>>
>>> at
>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>>
>>>
>>> at
>>> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61)
>>>
>>>
>>> at
>>> org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
>>>
>>>
>>> at
>>> org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
>>>
>>>
>>> at
>>> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
>>>
>>>
>>> at
>>> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
>>>
>>>
>>> at
>>> org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449)
>>>
>>>
>>> at
>>> org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365)
>>>
>>>
>>> at
>>> org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90)
>>>
>>>
>>> at
>>> org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83)
>>>
>>>
>>> at
>>> org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383)
>>>
>>>
>>> at
>>> org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362)
>>>
>>>
>>> at
>>> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
>>>
>>>
>>> at
>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>>
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.CrossOriginFilter.handle(CrossOriginFilter.java:285)
>>>
>>>
>>> at
>>> org.apache.jena.fuseki.servlets.CrossOriginFilter.doFilter(CrossOriginFilter.java:248)
>>>
>>>
>>> at
>>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>>
>>>
>>> at
>>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:581)
>>>
>>> at
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>>>
>>>
>>> at
>>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>>>
>>> at
>>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
>>>
>>>
>>> at
>>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1156)
>>>
>>>
>>> at
>>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)
>>>
>>> at
>>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
>>>
>>>
>>> at
>>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1088)
>>>
>>>
>>> at
>>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>>>
>>>
>>> at
>>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:119)
>>>
>>>
>>> at org.eclipse.jetty.server.Server.handle(Server.java:517)
>>> at
>>> org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:306)
>>> at
>>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:242)
>>>
>>> at
>>> org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:245)
>>>
>>>
>>> at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)
>>> at
>>> org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:75)
>>>
>>>
>>> at
>>> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceAndRun(ExecuteProduceConsume.java:213)
>>>
>>>
>>> at
>>> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:147)
>>>
>>>
>>> at
>>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:654)
>>>
>>>
>>> at
>>> org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:572)
>>>
>>>
>>> at java.lang.Thread.run(Thread.java:745)
>>>
>>> I will appreciate any help. Maybe this is a regression or on the
>>> contrary something is wrong with the query and Jena works correctly now.
>>>
>>> Best regards,
>>> Alex Shkop
>>>
>>
>
Re: Upgrade to Jena 3.1.0 breaks the query
Posted by Alex Shkop <as...@sciforce.solutions>.
Hi,
I'm deploying Fuseki with docker. I'm using a container identical to
that one https://hub.docker.com/r/stain/jena-fuseki/, but with Fuseki
2.4.0. And I can reproduce an issue with this simple assembler file:
@prefix : <http://base/#> .
@prefix tdb: <http://jena.hpl.hp.com/2008/tdb#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix ja: <http://jena.hpl.hp.com/2005/11/Assembler#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix fuseki: <http://jena.apache.org/fuseki#> .
@prefix text: <http://jena.apache.org/text#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema: <http://schema.org/> .
[] ja:loadClass "com.hp.hpl.jena.tdb.TDB" .
tdb:DatasetTDB rdfs:subClassOf ja:RDFDataset .
tdb:GraphTDB rdfs:subClassOf ja:Model .
# Here we define the actual dataset
:tdb_dataset_readwrite
a tdb:DatasetTDB ;
tdb:location "/fuseki/databases/test" .
:service_tdb_all a fuseki:Service ;
rdfs:label "TDB test" ;
fuseki:dataset :tdb_dataset_readwrite ;
fuseki:name "test" ;
fuseki:serviceQuery "query" , "sparql" ;
fuseki:serviceReadGraphStore "get" ;
fuseki:serviceReadWriteGraphStore
"data" ;
fuseki:serviceUpdate "update" ;
fuseki:serviceUpload "upload" .
Thanks,
Alex
On 17.06.16 19:54, Andy Seaborne wrote:
> Hi,
>
> I can't reproduce this with Fuseki 2.4.0 - could explain your Fuseki
> setup please?
>
> Andy
>
>
>
> On 17/06/16 16:25, Alex Shkop wrote:
>> Hello
>>
>> I've upgraded to Jena 3.1.0 and some of my SPARQL queries now crash with
>> NullPointerException. The simplest query that causes a crash looks like
>> this:
>>
>> SELECT ?s
>> WHERE {
>> ?s ?p ?o .
>> ?s <http://www.w3.org/2000/01/rdf-schema#member> ?m .
>> FILTER (!bound(?test))
>> }
>>
>> Here's the stack trace:
>> java.lang.NullPointerException
>> at
>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunctionProcedure(TransformFilterPlacement.java:453)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunction(TransformFilterPlacement.java:432)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:200)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:159)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.TransformWrapper.transform(TransformWrapper.java:59)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.op.OpFilter.apply(OpFilter.java:100)
>> at
>> org.apache.jena.sparql.algebra.Transformer$ApplyTransformVisitor.visitFilter(Transformer.java:401)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
>> at
>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:85)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visitFilter(OpWalker.java:91)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
>> at
>> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:83)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.OpVisitorByType.visitModifer(OpVisitorByType.java:42)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:158)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.op.OpProject.visit(OpProject.java:47)
>> at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:43)
>> at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:38)
>> at
>> org.apache.jena.sparql.algebra.Transformer.applyTransformation(Transformer.java:147)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:140)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:129)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:123)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.Transformer.transform(Transformer.java:56)
>>
>> at
>> org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:86)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:68)
>>
>>
>> at
>> org.apache.jena.sparql.algebra.optimize.Optimize.apply(Optimize.java:282)
>>
>> at
>> org.apache.jena.sparql.algebra.optimize.Optimize.rewrite(Optimize.java:225)
>>
>> at
>> org.apache.jena.sparql.algebra.optimize.Optimize.optimize(Optimize.java:78)
>>
>> at org.apache.jena.sparql.algebra.Algebra.optimize(Algebra.java:65)
>> at
>> org.apache.jena.sparql.engine.main.QueryEngineMain.modifyOp(QueryEngineMain.java:67)
>>
>>
>> at
>> org.apache.jena.tdb.solver.QueryEngineTDB.modifyOp(QueryEngineTDB.java:88)
>>
>> at
>> org.apache.jena.sparql.engine.QueryEngineBase.createPlan(QueryEngineBase.java:101)
>>
>>
>> at
>> org.apache.jena.sparql.engine.QueryEngineBase.getPlan(QueryEngineBase.java:87)
>>
>>
>> at
>> org.apache.jena.tdb.solver.QueryEngineTDB$QueryEngineFactoryTDB.create(QueryEngineTDB.java:169)
>>
>>
>> at
>> org.apache.jena.sparql.engine.QueryEngineFactoryWrapper.create(QueryEngineFactoryWrapper.java:50)
>>
>>
>> at
>> org.apache.jena.sparql.engine.QueryExecutionBase.getPlan(QueryExecutionBase.java:524)
>>
>>
>> at
>> org.apache.jena.sparql.engine.QueryExecutionBase.startQueryIterator(QueryExecutionBase.java:472)
>>
>>
>> at
>> org.apache.jena.sparql.engine.QueryExecutionBase.execResultSet(QueryExecutionBase.java:511)
>>
>>
>> at
>> org.apache.jena.sparql.engine.QueryExecutionBase.execSelect(QueryExecutionBase.java:172)
>>
>>
>> at
>> org.apache.jena.fuseki.servlets.SPARQL_Query.executeQuery(SPARQL_Query.java:314)
>>
>>
>> at
>> org.apache.jena.fuseki.servlets.SPARQL_Query.execute(SPARQL_Query.java:270)
>>
>> at
>> org.apache.jena.fuseki.servlets.SPARQL_Query.executeWithParameter(SPARQL_Query.java:228)
>>
>>
>> at
>> org.apache.jena.fuseki.servlets.SPARQL_Query.perform(SPARQL_Query.java:213)
>>
>> at
>> org.apache.jena.fuseki.servlets.ActionSPARQL.executeLifecycle(ActionSPARQL.java:134)
>>
>>
>> at
>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeRequest(SPARQL_UberServlet.java:354)
>>
>>
>> at
>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.serviceDispatch(SPARQL_UberServlet.java:315)
>>
>>
>> at
>> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeAction(SPARQL_UberServlet.java:271)
>>
>>
>> at
>> org.apache.jena.fuseki.servlets.ActionSPARQL.execCommonWorker(ActionSPARQL.java:85)
>>
>>
>> at
>> org.apache.jena.fuseki.servlets.ActionBase.doCommon(ActionBase.java:81)
>> at
>> org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:72)
>>
>> at
>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>
>>
>> at
>> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61)
>>
>>
>> at
>> org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
>>
>>
>> at
>> org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
>>
>>
>> at
>> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
>>
>>
>> at
>> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
>>
>>
>> at
>> org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449)
>>
>>
>> at
>> org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365)
>>
>>
>> at
>> org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90)
>>
>>
>> at
>> org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83)
>>
>>
>> at
>> org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383)
>>
>>
>> at
>> org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362)
>>
>>
>> at
>> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
>>
>>
>> at
>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>
>>
>> at
>> org.apache.jena.fuseki.servlets.CrossOriginFilter.handle(CrossOriginFilter.java:285)
>>
>>
>> at
>> org.apache.jena.fuseki.servlets.CrossOriginFilter.doFilter(CrossOriginFilter.java:248)
>>
>>
>> at
>> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>>
>>
>> at
>> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:581)
>>
>> at
>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>>
>>
>> at
>> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
>>
>> at
>> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
>>
>>
>> at
>> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1156)
>>
>>
>> at
>> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)
>>
>> at
>> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
>>
>>
>> at
>> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1088)
>>
>>
>> at
>> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>>
>>
>> at
>> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:119)
>>
>>
>> at org.eclipse.jetty.server.Server.handle(Server.java:517)
>> at
>> org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:306)
>> at
>> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:242)
>>
>> at
>> org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:245)
>>
>>
>> at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)
>> at
>> org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:75)
>>
>>
>> at
>> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceAndRun(ExecuteProduceConsume.java:213)
>>
>>
>> at
>> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:147)
>>
>>
>> at
>> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:654)
>>
>>
>> at
>> org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:572)
>>
>>
>> at java.lang.Thread.run(Thread.java:745)
>>
>> I will appreciate any help. Maybe this is a regression or on the
>> contrary something is wrong with the query and Jena works correctly now.
>>
>> Best regards,
>> Alex Shkop
>>
>
Re: Upgrade to Jena 3.1.0 breaks the query
Posted by Andy Seaborne <an...@apache.org>.
Hi,
I can't reproduce this with Fuseki 2.4.0 - could explain your Fuseki
setup please?
Andy
On 17/06/16 16:25, Alex Shkop wrote:
> Hello
>
> I've upgraded to Jena 3.1.0 and some of my SPARQL queries now crash with
> NullPointerException. The simplest query that causes a crash looks like
> this:
>
> SELECT ?s
> WHERE {
> ?s ?p ?o .
> ?s <http://www.w3.org/2000/01/rdf-schema#member> ?m .
> FILTER (!bound(?test))
> }
>
> Here's the stack trace:
> java.lang.NullPointerException
> at
> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunctionProcedure(TransformFilterPlacement.java:453)
>
> at
> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.placePropertyFunction(TransformFilterPlacement.java:432)
>
> at
> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:200)
>
> at
> org.apache.jena.sparql.algebra.optimize.TransformFilterPlacement.transform(TransformFilterPlacement.java:159)
>
> at
> org.apache.jena.sparql.algebra.TransformWrapper.transform(TransformWrapper.java:59)
>
> at org.apache.jena.sparql.algebra.op.OpFilter.apply(OpFilter.java:100)
> at
> org.apache.jena.sparql.algebra.Transformer$ApplyTransformVisitor.visitFilter(Transformer.java:401)
>
> at
> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
>
> at org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
> at
> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:85)
>
> at
> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visitFilter(OpWalker.java:91)
>
> at
> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:110)
>
> at org.apache.jena.sparql.algebra.op.OpFilter.visit(OpFilter.java:103)
> at
> org.apache.jena.sparql.algebra.OpWalker$WalkerVisitor.visit1(OpWalker.java:83)
>
> at
> org.apache.jena.sparql.algebra.OpVisitorByType.visitModifer(OpVisitorByType.java:42)
>
> at
> org.apache.jena.sparql.algebra.OpVisitorByType.visit(OpVisitorByType.java:158)
>
> at
> org.apache.jena.sparql.algebra.op.OpProject.visit(OpProject.java:47)
> at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:43)
> at org.apache.jena.sparql.algebra.OpWalker.walk(OpWalker.java:38)
> at
> org.apache.jena.sparql.algebra.Transformer.applyTransformation(Transformer.java:147)
>
> at
> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:140)
>
> at
> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:129)
>
> at
> org.apache.jena.sparql.algebra.Transformer.transformation(Transformer.java:123)
>
> at
> org.apache.jena.sparql.algebra.Transformer.transform(Transformer.java:56)
> at
> org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:86)
>
> at
> org.apache.jena.sparql.algebra.Transformer.transformSkipService(Transformer.java:68)
>
> at
> org.apache.jena.sparql.algebra.optimize.Optimize.apply(Optimize.java:282)
> at
> org.apache.jena.sparql.algebra.optimize.Optimize.rewrite(Optimize.java:225)
> at
> org.apache.jena.sparql.algebra.optimize.Optimize.optimize(Optimize.java:78)
> at org.apache.jena.sparql.algebra.Algebra.optimize(Algebra.java:65)
> at
> org.apache.jena.sparql.engine.main.QueryEngineMain.modifyOp(QueryEngineMain.java:67)
>
> at
> org.apache.jena.tdb.solver.QueryEngineTDB.modifyOp(QueryEngineTDB.java:88)
> at
> org.apache.jena.sparql.engine.QueryEngineBase.createPlan(QueryEngineBase.java:101)
>
> at
> org.apache.jena.sparql.engine.QueryEngineBase.getPlan(QueryEngineBase.java:87)
>
> at
> org.apache.jena.tdb.solver.QueryEngineTDB$QueryEngineFactoryTDB.create(QueryEngineTDB.java:169)
>
> at
> org.apache.jena.sparql.engine.QueryEngineFactoryWrapper.create(QueryEngineFactoryWrapper.java:50)
>
> at
> org.apache.jena.sparql.engine.QueryExecutionBase.getPlan(QueryExecutionBase.java:524)
>
> at
> org.apache.jena.sparql.engine.QueryExecutionBase.startQueryIterator(QueryExecutionBase.java:472)
>
> at
> org.apache.jena.sparql.engine.QueryExecutionBase.execResultSet(QueryExecutionBase.java:511)
>
> at
> org.apache.jena.sparql.engine.QueryExecutionBase.execSelect(QueryExecutionBase.java:172)
>
> at
> org.apache.jena.fuseki.servlets.SPARQL_Query.executeQuery(SPARQL_Query.java:314)
>
> at
> org.apache.jena.fuseki.servlets.SPARQL_Query.execute(SPARQL_Query.java:270)
> at
> org.apache.jena.fuseki.servlets.SPARQL_Query.executeWithParameter(SPARQL_Query.java:228)
>
> at
> org.apache.jena.fuseki.servlets.SPARQL_Query.perform(SPARQL_Query.java:213)
> at
> org.apache.jena.fuseki.servlets.ActionSPARQL.executeLifecycle(ActionSPARQL.java:134)
>
> at
> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeRequest(SPARQL_UberServlet.java:354)
>
> at
> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.serviceDispatch(SPARQL_UberServlet.java:315)
>
> at
> org.apache.jena.fuseki.servlets.SPARQL_UberServlet.executeAction(SPARQL_UberServlet.java:271)
>
> at
> org.apache.jena.fuseki.servlets.ActionSPARQL.execCommonWorker(ActionSPARQL.java:85)
>
> at
> org.apache.jena.fuseki.servlets.ActionBase.doCommon(ActionBase.java:81)
> at
> org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:72)
> at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>
> at
> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61)
>
> at
> org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108)
>
> at
> org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137)
>
> at
> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
>
> at
> org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66)
>
> at
> org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449)
>
> at
> org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365)
>
> at
> org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90)
>
> at
> org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83)
>
> at
> org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383)
>
> at
> org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362)
>
> at
> org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125)
>
> at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>
> at
> org.apache.jena.fuseki.servlets.CrossOriginFilter.handle(CrossOriginFilter.java:285)
>
> at
> org.apache.jena.fuseki.servlets.CrossOriginFilter.doFilter(CrossOriginFilter.java:248)
>
> at
> org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1669)
>
> at
> org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:581)
> at
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)
>
> at
> org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)
> at
> org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)
>
> at
> org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1156)
>
> at
> org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511)
> at
> org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)
>
> at
> org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1088)
>
> at
> org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)
>
> at
> org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:119)
>
> at org.eclipse.jetty.server.Server.handle(Server.java:517)
> at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:306)
> at
> org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:242)
> at
> org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:245)
>
> at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)
> at
> org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:75)
>
> at
> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceAndRun(ExecuteProduceConsume.java:213)
>
> at
> org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:147)
>
> at
> org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:654)
>
> at
> org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:572)
>
> at java.lang.Thread.run(Thread.java:745)
>
> I will appreciate any help. Maybe this is a regression or on the
> contrary something is wrong with the query and Jena works correctly now.
>
> Best regards,
> Alex Shkop
>