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Posted to commits@taverna.apache.org by bu...@apache.org on 2015/03/03 11:06:13 UTC
svn commit: r942081 - in /websites/staging/taverna/trunk: cgi-bin/ content/
content/introduction/taverna-in-use/bioinformatics.html
Author: buildbot
Date: Tue Mar 3 10:06:13 2015
New Revision: 942081
Log:
Staging update by buildbot for taverna
Modified:
websites/staging/taverna/trunk/cgi-bin/ (props changed)
websites/staging/taverna/trunk/content/ (props changed)
websites/staging/taverna/trunk/content/introduction/taverna-in-use/bioinformatics.html
Propchange: websites/staging/taverna/trunk/cgi-bin/
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Modified: websites/staging/taverna/trunk/content/introduction/taverna-in-use/bioinformatics.html
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--- websites/staging/taverna/trunk/content/introduction/taverna-in-use/bioinformatics.html (original)
+++ websites/staging/taverna/trunk/content/introduction/taverna-in-use/bioinformatics.html Tue Mar 3 10:06:13 2015
@@ -184,7 +184,7 @@ Instead it shows <a class="alert-link" h
</ul>
<h3 id="biodiversity">Biodiversity</h3>
<ul>
-<li><a href="/introduction/related-projects/biovel">BioVeL</a></li>
+<li><a href="/introduction/related-projects#biovel">BioVeL</a></li>
</ul>
<h3 id="gene-and-genome-expression">Gene and genome expression</h3>
<ul>
@@ -257,14 +257,14 @@ During enaction, the user can either wai
The suite of programs are also available for installation on pre-existing Linux systems.</p>
<p><a name="lumc"></a></p>
<h3 id="lumc">LUMC</h3>
-<p>People from the Leiden University Medical Center (<a href="http://www.lumc.nl/home/?setlanguage=English&amp;setcountry=en">LUMC</a>) in the Netherlands are using Taverna for analysis
+<p>People from the Leiden University Medical Center (<a href="https://www.lumc.nl/">LUMC</a> in the Netherlands are using Taverna for analysis
of mass spectrometry data in proteomics.</p>
<p>They presented a <a href="http://www.taverna.org.uk/pages/wp-content/uploads/2011/06/Palmblad_ASMS_2011_LUMC.pdf">poster</a> at the 2011 ASMS (the American Society for Mass Spectrometry) Conference on
Mass Spectrometry and Allied Topics.</p>
<p>Please contact <a href="https://www.lumc.nl/org/proteomics-metabolomics/medewerkers/nmpalmblad">Dr. Magnus Palmblad</a> for more details.</p>
<p><a name="measuring-enzyme-characteristics-of-yeast"></a></p>
<h3 id="measuring-enzyme-characteristics-of-yeast">Measuring enzyme characteristics of yeast</h3>
-<p>The <a href="/introduction/taverna-in-use/biology/manchester-centre-for-integrative-systems-biology">Manchester Centre for Integrative Systems Biology</a> (MCISB) is in the process of measuring the
+<p>The <a href="/introduction/taverna-in-use/biology#manchester-centre-for-integrative-systems-biology">Manchester Centre for Integrative Systems Biology</a> (MCISB) is in the process of measuring the
kinetic and binding constants associated with enzyme reactions in metabolic pathways in the yeast,
Saccharomyces cerevisiae.
Quantitative models of these metabolic pathways are being integrated with transcriptomic, proteomic and
@@ -273,7 +273,8 @@ Quantitative models of these metabolic p
<p>A <a href="http://www.mygrid.org.uk/files/2008/09/peter-li-poster.pdf">poster</a> by Peter Li describing the systems biology workflows was presented at the International
Conference of Systems Biology 2006 and he has written several publications about the work.</p>
<p>Many of the workflows make use of Systems Biology Markup Language (<a href="http://sbml.org/">SBML</a>) as described in the
- <a href="http://www.mygrid.org.uk/outreach/publications/li2007/">paper</a> <em>Automated manipulation of systems biology models using libSBML within Taverna workflows</em>
+ <a href="http://bioinformatics.oxfordjournals.org/content/24/2/287.full.pdf">paper</a>
+ <em>Automated manipulation of systems biology models using libSBML within Taverna workflows</em>
by Li et al.</p>
<p>An <a href="http://www.myexperiment.org/workflows/79">example workflow</a> using SBML is available on <a href="http://www.myexperiment.org/">myExperiment</a>.</p></div>