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Posted to issues@arrow.apache.org by "Michael Anselmi (JIRA)" <ji...@apache.org> on 2019/07/08 12:16:00 UTC
[jira] [Updated] (ARROW-5874) pyarrow 0.14.0 macOS wheels depend on
shared libs under /usr/local/opt
[ https://issues.apache.org/jira/browse/ARROW-5874?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Michael Anselmi updated ARROW-5874:
-----------------------------------
Summary: pyarrow 0.14.0 macOS wheels depend on shared libs under /usr/local/opt (was: pyarrow 0.14.0 macOS wheels appear to depend on shared libs under /usr/local/opt)
> pyarrow 0.14.0 macOS wheels depend on shared libs under /usr/local/opt
> ----------------------------------------------------------------------
>
> Key: ARROW-5874
> URL: https://issues.apache.org/jira/browse/ARROW-5874
> Project: Apache Arrow
> Issue Type: Bug
> Components: Python
> Affects Versions: 0.14.0
> Environment: macOS 10.14.5
> Anaconda Python 3.7.3
> Reporter: Michael Anselmi
> Priority: Critical
>
> Hello, and congrats on the recent release of Apache Arrow 0.14.0!
> This morning I installed pyarrow 0.14.0 on my macOS 10.14.5 system like so:
> {code:java}
> python3.7 -m venv ~/virtualenv/pyarrow-0.14.0
> source ~/virtualenv/pyarrow-0.14.0/bin/activate
> pip install --upgrade -- pip setuptools
> pip install pyarrow # installs pyarrow-0.14.0-cp37-cp37m-macosx_10_6_intel.whl
> pip freeze --all
> # numpy==1.16.4
> # pip==19.1.1
> # pyarrow==0.14.0
> # setuptools==41.0.1
> # six==1.12.0
> {code}
> However I am unable to import pyarrow:
> {code:java}
> python -c 'import pyarrow'
> # Traceback (most recent call last):
> # File "<string>", line 1, in <module>
> # File "/Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/__init__.py", line 49, in <module>
> # from pyarrow.lib import cpu_count, set_cpu_count
> # ImportError: dlopen(/Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/lib.cpython-37m-darwin.so, 2): Library not loaded: /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib
> # Referenced from: /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow.14.dylib
> # Reason: image not found
> {code}
> pyarrow is trying to load a shared library from a path under {{/usr/local/opt}} that doesn't exist. This makes the pyarrow 0.14.0 wheel completely unusable on my system.
> Additional diagnostic output below. I ran {{otool -L}} on each {{.dylib}} and {{.so}} file in {{/Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow}} and included the output for those with dependencies under {{/usr/local/opt}}:
> {code:java}
> otool -L /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow.14.dylib
> # /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow.14.dylib:
> # @rpath/libarrow.14.dylib (compatibility version 14.0.0, current version 14.0.0)
> # /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
> # /usr/local/opt/openssl/lib/libssl.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
> # /usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.8)
> # @rpath/libarrow_boost_system.dylib (compatibility version 0.0.0, current version 0.0.0)
> # @rpath/libarrow_boost_filesystem.dylib (compatibility version 0.0.0, current version 0.0.0)
> # @rpath/libarrow_boost_regex.dylib (compatibility version 0.0.0, current version 0.0.0)
> # /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)
> # /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.50.2)
> otool -L /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow_flight.14.dylib
> # /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow_flight.14.dylib:
> # @rpath/libarrow_flight.14.dylib (compatibility version 14.0.0, current version 14.0.0)
> # @rpath/libarrow.14.dylib (compatibility version 14.0.0, current version 14.0.0)
> # /usr/local/opt/openssl/lib/libssl.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
> # /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
> # /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)
> # /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.50.2)
> otool -L /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow_python.14.dylib
> # /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libarrow_python.14.dylib:
> # @rpath/libarrow_python.14.dylib (compatibility version 14.0.0, current version 14.0.0)
> # /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.50.2)
> # /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1349.64.0)
> # @rpath/libarrow_flight.14.dylib (compatibility version 14.0.0, current version 14.0.0)
> # @rpath/libarrow.14.dylib (compatibility version 14.0.0, current version 14.0.0)
> # /usr/local/opt/openssl/lib/libssl.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
> # /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
> # /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)
> otool -L /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libgandiva.14.dylib
> # /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libgandiva.14.dylib:
> # @rpath/libgandiva.14.dylib (compatibility version 14.0.0, current version 14.0.0)
> # @rpath/libarrow.14.dylib (compatibility version 14.0.0, current version 14.0.0)
> # /usr/local/opt/openssl/lib/libssl.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
> # /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
> # /usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.8)
> # /usr/lib/libncurses.5.4.dylib (compatibility version 5.4.0, current version 5.4.0)
> # /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.50.2)
> # /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)
> otool -L /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libplasma.14.dylib
> # /Users/manselmi/virtualenv/pyarrow-0.14.0/lib/python3.7/site-packages/pyarrow/libplasma.14.dylib:
> # @rpath/libplasma.14.dylib (compatibility version 14.0.0, current version 14.0.0)
> # @rpath/libarrow.14.dylib (compatibility version 14.0.0, current version 14.0.0)
> # /usr/local/opt/openssl/lib/libssl.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
> # /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0)
> # /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 307.5.0)
> # /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1238.50.2)
> {code}
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