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Posted to github@arrow.apache.org by GitBox <gi...@apache.org> on 2022/04/12 15:02:44 UTC

[GitHub] [arrow-rs] alamb commented on a diff in pull request #1499: Alternative implementation of nullif kernel by slicing nested buffers

alamb commented on code in PR #1499:
URL: https://github.com/apache/arrow-rs/pull/1499#discussion_r848538708


##########
arrow/src/compute/kernels/boolean.rs:
##########
@@ -575,10 +577,242 @@ where
     Ok(PrimitiveArray::<T>::from(data))
 }
 
+/// Creates a (mostly) zero-copy slice of the given buffers so that they can be combined
+/// in the same array with other buffers that start at offset 0.
+/// The only buffers that need an actual copy are booleans (if they are not byte-aligned)
+/// and list/binary/string offsets because the arrow implementation requires them to start at 0.
+/// This is useful when a kernel calculates a new validity bitmap but wants to reuse other buffers.
+fn slice_buffers(
+    buffers: &[Buffer],
+    offset: usize,
+    len: usize,
+    data_type: &DataType,
+    child_data: &[ArrayData],
+) -> (Vec<Buffer>, Vec<ArrayData>) {
+    use std::mem::size_of;
+
+    if offset == 0 {
+        return (buffers.to_vec(), child_data.to_vec());
+    }
+
+    // we only need to do something special to child data in 2 of the match branches
+    let mut result_child_data = None;
+
+    let result_buffers = match data_type {
+        DataType::Boolean => vec![buffers[0].bit_slice(offset, len)],
+        DataType::Int8 | DataType::UInt8 => {
+            vec![buffers[0].slice(offset * size_of::<u8>())]
+        }
+        DataType::Int16 | DataType::UInt16 | DataType::Float16 => {
+            vec![buffers[0].slice(offset * size_of::<u16>())]
+        }
+        DataType::Int32 | DataType::UInt32 | DataType::Float32 => {
+            vec![buffers[0].slice(offset * size_of::<u32>())]
+        }
+        DataType::Int64 | DataType::UInt64 | DataType::Float64 => {
+            vec![buffers[0].slice(offset * size_of::<u64>())]
+        }
+        DataType::Timestamp(_, _) | DataType::Duration(_) => {
+            vec![buffers[0].slice(offset * size_of::<u64>())]
+        }
+        DataType::Date32 | DataType::Time32(_) => {
+            vec![buffers[0].slice(offset * size_of::<u32>())]
+        }
+        DataType::Date64 | DataType::Time64(_) => {
+            vec![buffers[0].slice(offset * size_of::<u64>())]
+        }
+        DataType::Interval(IntervalUnit::YearMonth) => {
+            vec![buffers[0].slice(offset * size_of::<u32>())]
+        }
+        DataType::Interval(IntervalUnit::DayTime) => {
+            vec![buffers[0].slice(offset * 2 * size_of::<u32>())]
+        }
+        DataType::Interval(IntervalUnit::MonthDayNano) => {
+            vec![buffers[0].slice(offset * (2 * size_of::<u32>() + size_of::<u64>()))]
+        }
+        DataType::Decimal(_, _) => vec![buffers[0].slice(offset * size_of::<i128>())],
+        DataType::Dictionary(key_type, _) => match key_type.as_ref() {
+            DataType::Int8 | DataType::UInt8 => {
+                vec![buffers[0].slice(offset * size_of::<u8>())]
+            }
+            DataType::Int16 | DataType::UInt16 => {
+                vec![buffers[0].slice(offset * size_of::<u16>())]
+            }
+            DataType::Int32 | DataType::UInt32 => {
+                vec![buffers[0].slice(offset * size_of::<u32>())]
+            }
+            DataType::Int64 | DataType::UInt64 => {
+                vec![buffers[0].slice(offset * size_of::<u64>())]
+            }
+            _ => unreachable!(),
+        },
+        DataType::List(_) => {
+            // safe because for List the first buffer is guaranteed to contain i32 offsets
+            let offsets = unsafe { &buffers[0].typed_data()[offset..] };
+            let first_offset = offsets[0] as usize;
+            let last_offset = offsets[len] as usize;
+            let nested_len = last_offset - first_offset;
+
+            // since we calculate a new offset buffer starting from 0 we also have to slice the child data
+            result_child_data = Some(
+                child_data
+                    .iter()
+                    .map(|d| d.slice(first_offset, nested_len))
+                    .collect(),
+            );
+            vec![offset_buffer_slice::<i32>(offsets, len)]
+        }
+        DataType::LargeList(_) => {
+            // safe because for LargeList the first buffer is guaranteed to contain i64 offsets
+            let offsets = unsafe { &buffers[0].typed_data()[offset..] };
+            let first_offset = offsets[0] as usize;
+            let last_offset = offsets[len] as usize;
+            let nested_len = last_offset - first_offset;
+            // since we calculate a new offset buffer starting from 0 we also have to slice the child data
+
+            result_child_data = Some(
+                child_data
+                    .iter()
+                    .map(|d| d.slice(first_offset, nested_len))
+                    .collect(),
+            );
+            vec![offset_buffer_slice::<i64>(offsets, len)]
+        }
+        DataType::Binary | DataType::Utf8 => {
+            // safe because for Binary/Utf8 the first buffer is guaranteed to contain i32 offsets
+            let offsets = unsafe { &buffers[0].typed_data()[offset..] };
+            let first_offset = offsets[0] as usize;
+            vec![
+                offset_buffer_slice::<i32>(offsets, len),
+                buffers[1].slice(first_offset * size_of::<i32>()),
+            ]
+        }
+        DataType::LargeBinary | DataType::LargeUtf8 => {
+            // safe because for LargeBinary/LargeUtf8 the first buffer is guaranteed to contain i64 offsets
+            let offsets = unsafe { &buffers[0].typed_data()[offset..] };
+            let first_offset = offsets[0] as usize;
+            vec![
+                offset_buffer_slice::<i64>(offsets, len),
+                buffers[1].slice(first_offset * size_of::<i64>()),
+            ]
+        }
+        DataType::FixedSizeBinary(size) => {
+            vec![buffers[0].slice(offset * (*size as usize))]
+        }
+        DataType::FixedSizeList(_, _size) => {
+            // TODO: should this actually slice the child arrays?
+            vec![]
+        }
+        DataType::Struct(_) => {
+            // TODO: should this actually slice the child arrays?
+            vec![]
+        }
+        DataType::Union(..) => {
+            // TODO: verify this is actually correct
+            if buffers.len() > 1 {
+                // dense union, type ids and offsets
+                vec![
+                    buffers[0].slice(offset * size_of::<i8>()),
+                    buffers[1].slice(offset * size_of::<u32>()),
+                ]
+            } else {
+                // sparse union with only type ids
+                // should this also slice the child arrays?
+                vec![buffers[0].slice(offset * size_of::<i8>())]
+            }
+        }
+        DataType::Map(_, _) => {
+            // TODO: verify this is actually correct
+            result_child_data =
+                Some(child_data.iter().map(|d| d.slice(offset, len)).collect());
+            vec![]
+        }
+        DataType::Null => vec![],
+    };
+
+    (
+        result_buffers,
+        result_child_data.unwrap_or_else(|| child_data.to_vec()),
+    )
+}
+
+// ListArray::from(ArrayData) expected offsets to always start at 0 so we can't simply make a slice of the buffer,
+// but instead have to calculate a new buffer
+fn offset_buffer_slice<T: OffsetSizeTrait>(
+    original_offsets: &[T],
+    array_len: usize,
+) -> Buffer {
+    // offset buffer has 1 element more than the corresponding data buffer pointing yet another offset for the end of the buffer
+    let len_in_bytes = (array_len + 1) * std::mem::size_of::<T>();
+    let mut offset_buffer =
+        MutableBuffer::new(len_in_bytes).with_bitset(len_in_bytes, false);
+    let offset_slice = unsafe { offset_buffer.typed_data_mut::<T>() };
+    let offset_start = original_offsets[0];
+    offset_slice
+        .iter_mut()
+        .zip(original_offsets.iter())
+        .for_each(|(output, input)| {
+            *output = *input - offset_start;
+        });
+
+    offset_buffer.into()
+}
+
+pub fn nullif_alternative(
+    array: &ArrayRef,
+    condition: &BooleanArray,
+) -> Result<ArrayRef> {
+    if array.len() != condition.len() {
+        return Err(ArrowError::ComputeError(
+            "Inputs to conditional kernels must have the same length".to_string(),
+        ));
+    }
+
+    let condition_buffer = combine_option_buffers(
+        condition.data().buffers().first(),
+        condition.offset(),
+        condition.data().null_buffer(),
+        condition.offset(),
+        condition.len(),
+    )
+    .map(|b| !&b);
+
+    let result_valid_buffer = combine_option_buffers(
+        condition_buffer.as_ref(),
+        0,
+        array.data().null_buffer(),
+        array.offset(),
+        condition.len(),
+    );
+
+    let (result_data_buffers, result_child_data) = slice_buffers(

Review Comment:
   Perhaps `slice()` belongs on `ArrayData` (which has both the buffers and datatypes)



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