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Posted to notifications@ctakes.apache.org by Apache Jenkins Server <je...@builds.apache.org> on 2017/11/17 20:55:14 UTC
Build failed in Jenkins: cTAKES-trunk-Java-1.8 » Apache cTAKES YTEX UIMA #37
See <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/37/display/redirect>
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2017-11-17 20:30:30,210 TRACE org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end saveAnnoPrimitive
2017-11-17 20:30:30,224 TRACE org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - begin saveAnnoLinks
2017-11-17 20:30:30,224 TRACE org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end saveAnnoLinks
2017-11-17 20:30:30,225 TRACE org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end saveAnnotationsHib
2017-11-17 20:30:30,238 TRACE org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - end saveDocument
2017-11-17 20:30:30,257 INFO org.springframework.context.support.ClassPathXmlApplicationContext - Closing ApplicationContext 'ytexApplicationContext': startup date [Fri Nov 17 20:30:21 UTC 2017]; root of context hierarchy
2017-11-17 20:30:30,258 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory - Destroying singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@623a8092: defining beans [org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService,conceptSimilarityService,abstractConceptKernel,abstractLinKernel,abstractSemanticSimKernel,mainSuiSemanticTypeKernel,tuiSemanticTypeKernel,wordSenseDisambiguator,sessionFactory,ytexDaoOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#8,documentDao,namedEntityRegexDao,segmentRegexDao,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#9,ISO8601Converter,documentMapperService]; root of factory hierarchy
2017-11-17 20:30:30,261 INFO org.springframework.cache.ehcache.EhCacheManagerFactoryBean - Shutting down EHCache CacheManager
2017-11-17 20:30:30,344 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache commit start
2017-11-17 20:30:31,894 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache commit end
2017-11-17 20:30:31,970 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - Database closed
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 11.095 sec
Running org.apache.ctakes.ytex.uima.annotators.DateAnnotatorTest
Tests run: 1, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 1.235 sec <<< FAILURE!
Running org.apache.ctakes.ytex.uima.annotators.SentenceDetectorTest
2017-11-17 20:30:35,303 INFO org.apache.ctakes.core.ae.TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-17 20:30:35,311 INFO org.apache.ctakes.ytex.uima.annotators.SentenceDetector - [SegmentsToSkip, SentenceModelFile]
2017-11-17 20:30:35,391 INFO org.apache.ctakes.ytex.uima.annotators.SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
2017-11-17 20:30:35,997 INFO org.apache.ctakes.core.ae.TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-17 20:30:36,009 INFO org.apache.ctakes.ytex.uima.annotators.SentenceDetector - Starting processing.
[Dr. Doolitle asked patient
to take a deep breath
and exhale slowly.]
[Patient coughed.]
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.823 sec
Running org.apache.ctakes.ytex.uima.annotators.DictionaryLookupAnnotatorTest
2017-11-17 20:30:37,742 INFO org.apache.ctakes.chunker.ae.Chunker - Chunker model file: org/apache/ctakes/chunker/models/chunker-model.zip
2017-11-17 20:30:39,440 INFO org.apache.ctakes.core.ae.TokenizerAnnotatorPTB - Initializing org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-17 20:30:39,453 INFO org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator - Finite state machines loaded.
2017-11-17 20:30:39,458 INFO org.apache.ctakes.ytex.uima.ApplicationContextHolder - loading ytex.properties from: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/ytex.properties>
2017-11-17 20:30:39,459 INFO org.apache.ctakes.ytex.uima.ApplicationContextHolder - beanRefContext=classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml
2017-11-17 20:30:39,849 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache open start
2017-11-17 20:30:39,857 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache open end
2017-11-17 20:30:39,947 INFO org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl - Connection established to: jdbc:hsqldb:file:///tmp/ctakes-test-hsqldb/ctakes/ctakes;shutdown=true
2017-11-17 20:30:39,951 INFO org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator - Parsing descriptor: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/dictionary/lookup/LookupDesc_SNOMED.xml>
2017-11-17 20:30:40,009 INFO org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl - Exclusion tagset loaded: [pp, pdt, prp$, vbn, vbp, wdt, ls, vbz, dt, pos, md, wp, cc, cd, in, pp$, wrb, vb, prp, ex, vbd, vbg, to, wps, rp]
2017-11-17 20:30:40,048 INFO org.apache.ctakes.ytex.uima.annotators.SentenceDetector - [SegmentsToSkip, SentenceModelFile]
2017-11-17 20:30:40,049 INFO org.apache.ctakes.ytex.uima.annotators.SentenceDetector - Sentence detector model file: org/apache/ctakes/core/sentdetect/sd-med-model.zip
2017-11-17 20:30:40,217 INFO org.springframework.context.support.ClassPathXmlApplicationContext - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@9573584: startup date [Fri Nov 17 20:30:40 UTC 2017]; root of context hierarchy
2017-11-17 20:30:40,272 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from URL [jar:file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]
2017-11-17 20:30:40,349 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from URL [file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]
2017-11-17 20:30:40,362 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory - Overriding bean definition for bean 'ytexApplicationContext': replacing [Generic bean: class [org.springframework.context.support.ClassPathXmlApplicationContext]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]] with [Generic bean: class [org.springframework.context.support.ClassPathXmlApplicationContext]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]]
2017-11-17 20:30:40,391 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@4c51cf28: defining beans [ytexApplicationContext]; root of factory hierarchy
2017-11-17 20:30:40,456 INFO org.springframework.context.support.ClassPathXmlApplicationContext - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@ff684e1: startup date [Fri Nov 17 20:30:40 UTC 2017]; root of context hierarchy
2017-11-17 20:30:40,459 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-datasource.xml]
2017-11-17 20:30:42,146 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel.xml]
2017-11-17 20:30:42,263 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel-sim.xml]
2017-11-17 20:30:42,300 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima.hbm.xml]
2017-11-17 20:30:42,326 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima-dao.xml]
2017-11-17 20:30:42,351 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima-mapper.xml]
2017-11-17 20:30:42,374 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory - Overriding bean definition for bean 'mapperOperation': replacing [Root bean: class [org.springframework.aop.aspectj.AspectJExpressionPointcut]; scope=prototype; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null] with [Root bean: class [org.springframework.aop.aspectj.AspectJExpressionPointcut]; scope=prototype; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null]
2017-11-17 20:30:42,474 INFO org.springframework.beans.factory.config.PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-default.properties]
2017-11-17 20:30:42,474 INFO org.springframework.beans.factory.config.PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
2017-11-17 20:30:42,474 INFO org.springframework.beans.factory.config.PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-umls.properties]
2017-11-17 20:30:42,518 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@27305e6: defining beans [org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService,conceptSimilarityService,abstractConceptKernel,abstractLinKernel,abstractSemanticSimKernel,mainSuiSemanticTypeKernel,tuiSemanticTypeKernel,wordSenseDisambiguator,sessionFactory,ytexDaoOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#8,documentDao,namedEntityRegexDao,segmentRegexDao,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#9,ISO8601Converter,documentMapperService]; root of factory hierarchy
2017-11-17 20:30:42,573 INFO org.springframework.beans.factory.config.PropertiesFactoryBean - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
2017-11-17 20:30:43,342 INFO org.hibernate.annotations.common.Version - HCANN000001: Hibernate Commons Annotations {4.0.2.Final}
2017-11-17 20:30:43,351 INFO org.hibernate.Version - HHH000412: Hibernate Core {4.2.6.Final}
2017-11-17 20:30:43,354 INFO org.hibernate.cfg.Environment - HHH000206: hibernate.properties not found
2017-11-17 20:30:43,355 INFO org.hibernate.cfg.Environment - HHH000021: Bytecode provider name : javassist
2017-11-17 20:30:43,752 INFO org.hibernate.dialect.Dialect - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect
2017-11-17 20:30:43,901 WARN org.hibernate.mapping.RootClass - HHH000038: Composite-id class does not override equals(): org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
2017-11-17 20:30:43,901 WARN org.hibernate.mapping.RootClass - HHH000039: Composite-id class does not override hashCode(): org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
2017-11-17 20:30:43,907 INFO org.hibernate.engine.transaction.internal.TransactionFactoryInitiator - HHH000399: Using default transaction strategy (direct JDBC transactions)
2017-11-17 20:30:43,913 INFO org.hibernate.hql.internal.ast.ASTQueryTranslatorFactory - HHH000397: Using ASTQueryTranslatorFactory
2017-11-17 20:30:44,115 INFO org.hibernate.cache.spi.UpdateTimestampsCache - HHH000250: Starting update timestamps cache at region: org.hibernate.cache.spi.UpdateTimestampsCache
2017-11-17 20:30:44,123 INFO org.hibernate.cache.internal.StandardQueryCache - HHH000248: Starting query cache at region: org.hibernate.cache.internal.StandardQueryCache
2017-11-17 20:30:44,146 INFO org.hibernate.id.enhanced.TableGenerator - HHH000398: Explicit segment value for id generator [PUBLIC.hibernate_sequences.sequence_name] suggested; using default [default]
2017-11-17 20:30:44,387 WARN org.hibernate.cache.ehcache.AbstractEhcacheRegionFactory - HHH020003: Could not find a specific ehcache configuration for cache named [org.apache.ctakes.ytex.uima.model.UimaType]; using defaults.
2017-11-17 20:30:44,389 WARN org.hibernate.cache.ehcache.internal.strategy.EhcacheAccessStrategyFactoryImpl - HHH020007: read-only cache configured for mutable entity [org.apache.ctakes.ytex.uima.model.UimaType]
2017-11-17 20:30:45,683 INFO org.springframework.orm.hibernate4.HibernateTransactionManager - Using DataSource [org.apache.commons.dbcp.BasicDataSource@76889e60] of Hibernate SessionFactory for HibernateTransactionManager
2017-11-17 20:30:46,199 INFO org.springframework.cache.ehcache.EhCacheManagerFactoryBean - Initializing EHCache CacheManager
2017-11-17 20:30:46,225 WARN net.sf.ehcache.CacheManager - Creating a new instance of CacheManager using the diskStorePath "/tmp" which is already used by an existing CacheManager.
The source of the configuration was net.sf.ehcache.config.generator.ConfigurationSource$InputStreamConfigurationSource@24db6ce.
The diskStore path for this CacheManager will be set to /tmp/ehcache_auto_created_1510950646224.
To avoid this warning consider using the CacheManager factory methods to create a singleton CacheManager or specifying a separate ehcache configuration (ehcache.xml) for each CacheManager instance.
2017-11-17 20:30:46,608 INFO org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl - begin initialization for concept graph: sct-rxnorm
2017-11-17 20:30:46,682 INFO org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl - could not load conceptGraph from classpath, attempt to load from: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/conceptGraph/sct-rxnorm.gz>
2017-11-17 20:30:46,682 INFO org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl - <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/conceptGraph/sct-rxnorm.gz> not found, cannot load concept graph
2017-11-17 20:30:46,682 INFO org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl - could not load conceptGraph: sct-rxnorm
2017-11-17 20:30:46,725 WARN org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl - concept graph null, name: sct-rxnorm
2017-11-17 20:30:46,725 INFO org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl - end initialization for concept graph: sct-rxnorm
2017-11-17 20:30:47,016 INFO org.hibernate.dialect.Dialect - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect
2017-11-17 20:30:47,120 INFO org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - document table name = PUBLIC.document
2017-11-17 20:30:47,123 DEBUG org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - docTableCols: {}
2017-11-17 20:30:47,153 WARN org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotator - Concept Graph was not loaded - word sense disambiguation disabled
2017-11-17 20:30:47,204 INFO org.apache.ctakes.postagger.POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip
2017-11-17 20:30:48,181 DEBUG org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator - segmentsAdded: 0
2017-11-17 20:30:48,188 INFO org.apache.ctakes.ytex.uima.annotators.SentenceDetector - Starting processing.
2017-11-17 20:30:48,203 INFO org.apache.ctakes.core.ae.TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
2017-11-17 20:30:48,232 INFO org.apache.ctakes.contexttokenizer.ae.ContextDependentTokenizerAnnotator - process(JCas)
2017-11-17 20:30:48,295 INFO org.apache.ctakes.postagger.POSTagger - process(JCas)
2017-11-17 20:30:48,310 INFO org.apache.ctakes.chunker.ae.Chunker - process(JCas)
2017-11-17 20:30:48,334 INFO org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster - process(JCas)
2017-11-17 20:30:48,337 INFO org.apache.ctakes.chunker.ae.adjuster.ChunkAdjuster - process(JCas)
2017-11-17 20:30:48,339 INFO org.apache.ctakes.core.ae.CopyAnnotator - process(JCas)
2017-11-17 20:30:48,342 INFO org.apache.ctakes.core.ae.OverlapAnnotator - process(JCas)
2017-11-17 20:30:48,346 INFO org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator - process(JCas)
NP [Dr. Doolitle]
VP [asked]
NP [patient]
VP [
to take]
O [
]
NP [a deep breath
]
NP [
]
PP [
]
O [and]
ADJP [exhale]
ADVP [slowly]
NP [Patient]
VP [coughed]
O [and]
VP [complained]
PP [of]
NP [abdominal pain]
NP [Patient]
VP [was administered]
NP [acetaminophen]
LookupWindowAnnotation [Dr. Doolitle]
LookupWindowAnnotation [patient]
LookupWindowAnnotation [a deep breath
]
LookupWindowAnnotation [Patient]
LookupWindowAnnotation [abdominal pain]
LookupWindowAnnotation [Patient]
LookupWindowAnnotation [acetaminophen]
EntityMention [abdominal]
EntityMention [pain]
EntityMention [acetaminophen]
2017-11-17 20:30:48,521 INFO org.apache.ctakes.ytex.uima.resource.InitableJdbcConnectionResourceImpl - Connection established to: jdbc:hsqldb:file:///tmp/ctakes-test-hsqldb/ctakes/ctakes;shutdown=true
2017-11-17 20:30:48,522 INFO org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator - Parsing descriptor: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/dictionary/lookup/LookupDesc_SNOMED.xml>
2017-11-17 20:30:48,527 INFO org.apache.ctakes.dictionary.lookup.ae.FirstTokenPermLookupInitializerImpl - Exclusion tagset loaded: [pp, pdt, prp$, vbn, vbp, wdt, ls, vbz, dt, pos, md, wp, cc, cd, in, pp$, wrb, vb, prp, ex, vbd, vbg, to, wps, rp]
2017-11-17 20:30:48,603 INFO org.apache.ctakes.dictionary.lookup.ae.DictionaryLookupAnnotator - process(JCas)
EntityMention [acetaminophen]
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.143 sec
Running org.apache.ctakes.ytex.uima.annotators.DBCollectionReaderTest
2017-11-17 20:30:50,053 INFO org.apache.ctakes.ytex.uima.ApplicationContextHolder - loading ytex.properties from: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/ytex.properties>
2017-11-17 20:30:50,055 INFO org.apache.ctakes.ytex.uima.ApplicationContextHolder - beanRefContext=classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml
2017-11-17 20:30:50,133 INFO org.springframework.context.support.ClassPathXmlApplicationContext - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@47af7f3d: startup date [Fri Nov 17 20:30:50 UTC 2017]; root of context hierarchy
2017-11-17 20:30:50,186 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from URL [jar:file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]
2017-11-17 20:30:50,246 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from URL [file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]
2017-11-17 20:30:50,254 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory - Overriding bean definition for bean 'ytexApplicationContext': replacing [Generic bean: class [org.springframework.context.support.ClassPathXmlApplicationContext]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [jar:file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/target/ctakes-ytex-res-4.0.1-SNAPSHOT.jar!/org/apache/ctakes/ytex/uima/beanRefContext.xml]] with [Generic bean: class [org.springframework.context.support.ClassPathXmlApplicationContext]; scope=; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null; defined in URL [file:/home/jenkins/jenkins-slave/workspace/cTAKES-trunk-Java-1.8/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]]
2017-11-17 20:30:50,277 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@5f683daf: defining beans [ytexApplicationContext]; root of factory hierarchy
2017-11-17 20:30:50,341 INFO org.springframework.context.support.ClassPathXmlApplicationContext - Refreshing org.springframework.context.support.ClassPathXmlApplicationContext@6283d8b8: startup date [Fri Nov 17 20:30:50 UTC 2017]; root of context hierarchy
2017-11-17 20:30:50,345 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-datasource.xml]
2017-11-17 20:30:50,573 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel.xml]
2017-11-17 20:30:50,649 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/beans-kernel-sim.xml]
2017-11-17 20:30:50,676 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima.hbm.xml]
2017-11-17 20:30:50,700 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima-dao.xml]
2017-11-17 20:30:50,722 INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader - Loading XML bean definitions from class path resource [org/apache/ctakes/ytex/uima/beans-uima-mapper.xml]
2017-11-17 20:30:50,756 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory - Overriding bean definition for bean 'mapperOperation': replacing [Root bean: class [org.springframework.aop.aspectj.AspectJExpressionPointcut]; scope=prototype; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null] with [Root bean: class [org.springframework.aop.aspectj.AspectJExpressionPointcut]; scope=prototype; abstract=false; lazyInit=false; autowireMode=0; dependencyCheck=0; autowireCandidate=true; primary=false; factoryBeanName=null; factoryMethodName=null; initMethodName=null; destroyMethodName=null]
2017-11-17 20:30:50,850 INFO org.springframework.beans.factory.config.PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-default.properties]
2017-11-17 20:30:50,851 INFO org.springframework.beans.factory.config.PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
2017-11-17 20:30:50,851 INFO org.springframework.beans.factory.config.PropertyPlaceholderConfigurer - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex-umls.properties]
2017-11-17 20:30:50,890 INFO org.springframework.beans.factory.support.DefaultListableBeanFactory - Pre-instantiating singletons in org.springframework.beans.factory.support.DefaultListableBeanFactory@5167f57d: defining beans [org.springframework.beans.factory.config.PropertyPlaceholderConfigurer#0,ytexProperties,hibernateProperties,dataSource,txAdvice,txTemplate,txTemplateNew,transactionManager,org.springframework.aop.config.internalAutoProxyCreator,daoOperation,umlsDaoOperation,exporterOperation,wekaImporter,mapperOperation,treeOperation,utilOperation,corpusEvaluatorOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#0,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#1,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#2,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#3,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#4,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#5,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#6,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#7,kernelEvaluationDao,conceptDao,umlsDao,wekaBagOfWordsExporter,gramMatrixExporter,documentResultInstanceImporter,wekaResultsImporter,classifierEvaluationDao,libSVMGramMatrixExporter,rGramMatrixExporter,libsvmUtil,instanceTreeBuilder,abstractNormKernel,equalityKernel,atttributeProductKernel,cacheManager,abstractCorpusKernelEvaluator,foldGenerator,kernelUtil,baseClassifierEvaluationParser,semiLEvaluationParser,libSVMParser,svmLightParser,svmlinParser,ClassifierEvaluationImporter,sparseDataExporter,sparseDataFormatterFactory,svmLightFormatterFactory,libSVMFormatterFactory,svmLinFormatterFactory,sgtFormatterFactory,sparseMatrixFormatterFactory,semiLFormatterFactory,wekaFormatterFactory,instanceDataExporter,infogainAttributeEval,rankerSearch,infogainAttributeSelection,wekaAttributeEvaluator,infoContentEvaluator,intrinsicInfoContentEvaluator,imputedFeatureEvaluator,cytoscapeHelper,abstractKernelCacheAdvice,pageRankService,conceptSimilarityService,abstractConceptKernel,abstractLinKernel,abstractSemanticSimKernel,mainSuiSemanticTypeKernel,tuiSemanticTypeKernel,wordSenseDisambiguator,sessionFactory,ytexDaoOperation,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#8,documentDao,namedEntityRegexDao,segmentRegexDao,org.springframework.aop.support.DefaultBeanFactoryPointcutAdvisor#9,ISO8601Converter,documentMapperService]; root of factory hierarchy
2017-11-17 20:30:50,955 INFO org.springframework.beans.factory.config.PropertiesFactoryBean - Loading properties file from class path resource [org/apache/ctakes/ytex/ytex.properties]
2017-11-17 20:30:51,798 INFO org.hibernate.annotations.common.Version - HCANN000001: Hibernate Commons Annotations {4.0.2.Final}
2017-11-17 20:30:51,805 INFO org.hibernate.Version - HHH000412: Hibernate Core {4.2.6.Final}
2017-11-17 20:30:51,808 INFO org.hibernate.cfg.Environment - HHH000206: hibernate.properties not found
2017-11-17 20:30:51,809 INFO org.hibernate.cfg.Environment - HHH000021: Bytecode provider name : javassist
2017-11-17 20:30:52,689 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache open start
2017-11-17 20:30:52,698 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache open end
2017-11-17 20:30:52,768 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - checkpointClose start
2017-11-17 20:30:52,817 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache commit start
2017-11-17 20:30:52,842 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache commit end
2017-11-17 20:30:52,909 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - checkpointClose end
2017-11-17 20:30:53,027 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache commit start
2017-11-17 20:30:53,052 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache commit end
2017-11-17 20:30:53,128 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - Database closed
2017-11-17 20:30:53,287 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache open start
2017-11-17 20:30:53,288 INFO hsqldb.db.HSQLDB5FCBABF852.ENGINE - dataFileCache open end
2017-11-17 20:30:53,371 INFO org.hibernate.dialect.Dialect - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect
2017-11-17 20:30:53,544 WARN org.hibernate.mapping.RootClass - HHH000038: Composite-id class does not override equals(): org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
2017-11-17 20:30:53,544 WARN org.hibernate.mapping.RootClass - HHH000039: Composite-id class does not override hashCode(): org.apache.ctakes.ytex.uima.model.AnnotationContainmentLink
2017-11-17 20:30:53,555 INFO org.hibernate.engine.transaction.internal.TransactionFactoryInitiator - HHH000399: Using default transaction strategy (direct JDBC transactions)
2017-11-17 20:30:53,562 INFO org.hibernate.hql.internal.ast.ASTQueryTranslatorFactory - HHH000397: Using ASTQueryTranslatorFactory
2017-11-17 20:30:53,731 INFO org.hibernate.cache.spi.UpdateTimestampsCache - HHH000250: Starting update timestamps cache at region: org.hibernate.cache.spi.UpdateTimestampsCache
2017-11-17 20:30:53,737 INFO org.hibernate.cache.internal.StandardQueryCache - HHH000248: Starting query cache at region: org.hibernate.cache.internal.StandardQueryCache
2017-11-17 20:30:53,759 INFO org.hibernate.id.enhanced.TableGenerator - HHH000398: Explicit segment value for id generator [PUBLIC.hibernate_sequences.sequence_name] suggested; using default [default]
2017-11-17 20:30:53,986 WARN org.hibernate.cache.ehcache.AbstractEhcacheRegionFactory - HHH020003: Could not find a specific ehcache configuration for cache named [org.apache.ctakes.ytex.uima.model.UimaType]; using defaults.
2017-11-17 20:30:53,987 WARN org.hibernate.cache.ehcache.internal.strategy.EhcacheAccessStrategyFactoryImpl - HHH020007: read-only cache configured for mutable entity [org.apache.ctakes.ytex.uima.model.UimaType]
2017-11-17 20:30:54,636 INFO org.springframework.orm.hibernate4.HibernateTransactionManager - Using DataSource [org.apache.commons.dbcp.BasicDataSource@6b00ad9] of Hibernate SessionFactory for HibernateTransactionManager
2017-11-17 20:30:55,053 INFO org.springframework.cache.ehcache.EhCacheManagerFactoryBean - Initializing EHCache CacheManager
2017-11-17 20:30:55,068 WARN net.sf.ehcache.CacheManager - Creating a new instance of CacheManager using the diskStorePath "/tmp" which is already used by an existing CacheManager.
The source of the configuration was net.sf.ehcache.config.generator.ConfigurationSource$InputStreamConfigurationSource@336880df.
The diskStore path for this CacheManager will be set to /tmp/ehcache_auto_created_1510950655068.
To avoid this warning consider using the CacheManager factory methods to create a singleton CacheManager or specifying a separate ehcache configuration (ehcache.xml) for each CacheManager instance.
2017-11-17 20:30:55,529 INFO org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl - begin initialization for concept graph: sct-rxnorm
2017-11-17 20:30:55,618 INFO org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl - could not load conceptGraph from classpath, attempt to load from: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/conceptGraph/sct-rxnorm.gz>
2017-11-17 20:30:55,618 INFO org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl - <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/target/test-classes/org/apache/ctakes/ytex/conceptGraph/sct-rxnorm.gz> not found, cannot load concept graph
2017-11-17 20:30:55,618 INFO org.apache.ctakes.ytex.kernel.dao.ConceptDaoImpl - could not load conceptGraph: sct-rxnorm
2017-11-17 20:30:55,686 WARN org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl - concept graph null, name: sct-rxnorm
2017-11-17 20:30:55,686 INFO org.apache.ctakes.ytex.kernel.metric.ConceptSimilarityServiceImpl - end initialization for concept graph: sct-rxnorm
2017-11-17 20:30:56,024 INFO org.hibernate.dialect.Dialect - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect
2017-11-17 20:30:56,254 INFO org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - document table name = PUBLIC.document
2017-11-17 20:30:56,257 DEBUG org.apache.ctakes.ytex.uima.mapper.DocumentMapperServiceImpl - docTableCols: {}
2017-11-17 20:30:56,777 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=0}
2017-11-17 20:30:56,795 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=1}
2017-11-17 20:30:56,797 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=2}
2017-11-17 20:30:56,799 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=3}
2017-11-17 20:30:56,800 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=4}
2017-11-17 20:30:56,801 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=5}
2017-11-17 20:30:56,802 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=6}
2017-11-17 20:30:56,803 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=7}
2017-11-17 20:30:56,805 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=8}
2017-11-17 20:30:56,806 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=9}
2017-11-17 20:30:56,807 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=10}
2017-11-17 20:30:56,809 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=11}
2017-11-17 20:30:56,810 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=12}
2017-11-17 20:30:56,812 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=13}
2017-11-17 20:30:56,814 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=14}
2017-11-17 20:30:56,817 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=15}
2017-11-17 20:30:56,822 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=16}
2017-11-17 20:30:56,825 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=17}
2017-11-17 20:30:56,827 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=18}
2017-11-17 20:30:56,828 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=19}
2017-11-17 20:30:56,831 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=20}
2017-11-17 20:30:56,832 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=21}
2017-11-17 20:30:56,834 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=22}
2017-11-17 20:30:56,836 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=23}
2017-11-17 20:30:56,838 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=24}
2017-11-17 20:30:56,840 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=25}
2017-11-17 20:30:56,841 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=26}
2017-11-17 20:30:56,843 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=27}
2017-11-17 20:30:56,845 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=28}
2017-11-17 20:30:56,846 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=29}
2017-11-17 20:30:56,848 INFO org.apache.ctakes.ytex.uima.DBCollectionReader - loading document with id = {INSTANCE_ID=30}
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.794 sec
Running org.apache.ctakes.ytex.tools.SetupAuiFirstWordTest
2017-11-17 20:30:57,726 WARN org.apache.ctakes.ytex.tools.SetupAuiFirstWord - classpath:ctakes-lvg/desc/analysis_engine/LvgAnnotator.xml not available, attempting to load from file system
2017-11-17 20:30:57,921 INFO org.apache.ctakes.ytex.tools.SetupAuiFirstWord - loading lvg.properties from:file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties
** Configuration Error: <https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/file>:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties (No such file or directory)
** Error: problem of opening/reading config file: '<https://builds.apache.org/job/cTAKES-trunk-Java-1.8/org.apache.ctakes$ctakes-ytex-uima/ws/file>:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg//file:/home/jenkins/jenkins-slave/maven-repositories/0/net/sourceforge/ctakesresources/ctakes-resources-lvg2008/4.0.0/ctakes-resources-lvg2008-4.0.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties'. Use -x option to specify the config file path.
UmlsAuiFirstWord [aui=1tok, fword=heart]
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.472 sec
Results :
Failed tests: testParseDate(org.apache.ctakes.ytex.uima.annotators.DateAnnotatorTest)
Tests run: 13, Failures: 1, Errors: 0, Skipped: 0
[JENKINS] Recording test results
[JENKINS] Archiving disabled