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Posted to commits@commons.apache.org by lu...@apache.org on 2015/12/09 17:01:15 UTC
[18/21] [math] Merge branch 'MATH_3_X' into field-ode
Merge branch 'MATH_3_X' into field-ode
Project: http://git-wip-us.apache.org/repos/asf/commons-math/repo
Commit: http://git-wip-us.apache.org/repos/asf/commons-math/commit/2291c26c
Tree: http://git-wip-us.apache.org/repos/asf/commons-math/tree/2291c26c
Diff: http://git-wip-us.apache.org/repos/asf/commons-math/diff/2291c26c
Branch: refs/heads/field-ode
Commit: 2291c26cf91f8eb66d278ed73b7d9a5b69ea62cb
Parents: 01026aa c23e9fb
Author: Luc Maisonobe <lu...@apache.org>
Authored: Wed Dec 9 16:19:43 2015 +0100
Committer: Luc Maisonobe <lu...@apache.org>
Committed: Wed Dec 9 16:19:43 2015 +0100
----------------------------------------------------------------------
src/changes/changes.xml | 17 ++
.../analysis/polynomials/PolynomialsUtils.java | 10 +-
.../math3/optim/univariate/BracketFinder.java | 4 +-
.../math3/random/JDKRandomGenerator.java | 17 ++
.../stat/descriptive/DescriptiveStatistics.java | 17 +-
.../math3/stat/descriptive/moment/Skewness.java | 5 +
.../stat/inference/KolmogorovSmirnovTest.java | 196 ++++++++++++++++++-
.../apache/commons/math3/util/MathArrays.java | 58 ++++++
src/test/R/ChiSquareDistributionTestCases.R | 8 +-
src/test/R/FDistributionTestCases.R | 8 +-
src/test/R/GammaDistributionTestCases.R | 8 +-
.../R/KolmogorovSmirnovDistributionTestCases.R | 6 +-
src/test/R/KolmogorovSmirnovTestCases.R | 48 +++--
src/test/R/LevyDistributionTestCases.R | 5 +-
src/test/R/README.txt | 72 +++----
src/test/R/TDistributionTestCases.R | 8 +-
src/test/R/TTestCases | 20 +-
src/test/R/WeibullDistributionTestCases.R | 8 +-
src/test/R/anovaTestCases | 8 +-
src/test/R/binomialTestCases | 8 +-
src/test/R/cauchyTestCases.R | 6 +-
src/test/R/chiSquareTestCases | 20 +-
src/test/R/correlationTestCases | 16 +-
src/test/R/covarianceTestCases | 16 +-
src/test/R/descriptiveTestCases | 6 +-
src/test/R/exponentialTestCases | 8 +-
src/test/R/geometricTestCases | 10 +-
src/test/R/hypergeometricTestCases | 12 +-
src/test/R/multipleOLSRegressionTestCases | 32 +--
src/test/R/nakagamiTestCases.R | 6 +-
src/test/R/normalTestCases | 8 +-
src/test/R/paretoTestCases | 11 +-
src/test/R/pascalTestCases | 6 +-
src/test/R/poissonTestCases | 12 +-
src/test/R/regressionTestCases | 24 +--
src/test/R/testAll | 14 +-
src/test/R/testFunctions | 6 +-
src/test/R/zipfTestCases | 6 +-
.../math3/analysis/FunctionUtilsTest.java | 8 +-
.../DerivativeStructureTest.java | 16 +-
.../FiniteDifferencesDifferentiatorTest.java | 14 +-
.../differentiation/GradientFunctionTest.java | 4 +-
.../differentiation/JacobianFunctionTest.java | 4 +-
.../differentiation/SparseGradientTest.java | 4 +-
.../math3/analysis/function/GaussianTest.java | 2 +-
.../math3/analysis/function/LogisticTest.java | 8 +-
.../math3/analysis/function/SigmoidTest.java | 2 +-
.../analysis/function/StepFunctionTest.java | 8 +-
.../integration/MidPointIntegratorTest.java | 4 +-
.../BicubicSplineInterpolatingFunctionTest.java | 18 +-
.../BicubicSplineInterpolatorTest.java | 6 +-
...PolynomialBicubicSplineInterpolatorTest.java | 8 +-
.../TricubicInterpolatingFunctionTest.java | 4 +-
...TricubicSplineInterpolatingFunctionTest.java | 16 +-
.../TricubicSplineInterpolatorTest.java | 12 +-
.../PolynomialSplineFunctionTest.java | 2 +-
.../polynomials/PolynomialsUtilsTest.java | 2 +-
.../commons/math3/complex/QuaternionTest.java | 2 +-
.../apache/commons/math3/dfp/DfpDecTest.java | 6 +-
.../apache/commons/math3/dfp/DfpMathTest.java | 122 ++++++------
.../distribution/BinomialDistributionTest.java | 4 +-
.../ConstantRealDistributionTest.java | 4 +-
.../EnumeratedIntegerDistributionTest.java | 2 +-
.../EnumeratedRealDistributionTest.java | 8 +-
.../distribution/GeometricDistributionTest.java | 2 +-
.../HypergeometricDistributionTest.java | 14 +-
.../KolmogorovSmirnovDistributionTest.java | 8 +-
.../distribution/LevyDistributionTest.java | 2 +-
.../MultivariateNormalDistributionTest.java | 2 +-
.../distribution/PoissonDistributionTest.java | 2 +-
.../RealDistributionAbstractTest.java | 12 +-
.../math3/distribution/TDistributionTest.java | 4 +-
.../UniformRealDistributionTest.java | 10 +-
...ormalMixtureExpectationMaximizationTest.java | 10 +-
.../DimensionMismatchExceptionTest.java | 2 +-
.../MaxCountExceededExceptionTest.java | 2 +-
.../NonMonotonicSequenceExceptionTest.java | 2 +-
.../exception/NotPositiveExceptionTest.java | 2 +-
.../NotStrictlyPositiveExceptionTest.java | 2 +-
.../NumberIsTooLargeExceptionTest.java | 2 +-
.../NumberIsTooSmallExceptionTest.java | 2 +-
.../exception/OutOfRangeExceptionTest.java | 2 +-
.../TooManyEvaluationsExceptionTest.java | 2 +-
.../math3/exception/util/ArgUtilsTest.java | 2 +-
.../exception/util/ExceptionContextTest.java | 2 +-
.../commons/math3/filter/KalmanFilterTest.java | 50 ++---
.../math3/fitting/GaussianCurveFitterTest.java | 16 +-
.../math3/fitting/GaussianFitterTest.java | 16 +-
.../math3/fitting/HarmonicCurveFitterTest.java | 2 +-
.../fitting/PolynomialCurveFitterTest.java | 2 +-
.../math3/fitting/SimpleCurveFitterTest.java | 2 +-
.../fitting/leastsquares/CircleProblem.java | 2 +-
.../fitting/leastsquares/CircleVectorial.java | 2 +-
.../math3/fitting/leastsquares/MinpackTest.java | 4 +-
.../commons/math3/fraction/BigFractionTest.java | 4 +-
.../math3/genetics/CycleCrossoverTest.java | 4 +-
.../math3/genetics/DummyListChromosome.java | 2 +-
.../genetics/ElitisticListPopulationTest.java | 10 +-
.../math3/genetics/ListPopulationTest.java | 26 +--
.../math3/genetics/NPointCrossoverTest.java | 16 +-
.../math3/genetics/OrderedCrossoverTest.java | 6 +-
.../commons/math3/genetics/RandomKeyTest.java | 2 +-
.../math3/genetics/UniformCrossoverTest.java | 14 +-
.../euclidean/threed/FieldVector3DTest.java | 6 +-
.../geometry/euclidean/threed/LineTest.java | 2 +-
.../euclidean/threed/PolyhedronsSetTest.java | 26 +--
.../geometry/euclidean/threed/RotationTest.java | 2 +-
.../euclidean/threed/SphereGeneratorTest.java | 2 +-
.../threed/SphericalCoordinatesTest.java | 2 +-
.../geometry/euclidean/threed/SubLineTest.java | 2 +-
.../geometry/euclidean/threed/Vector3DTest.java | 6 +-
.../euclidean/twod/DiskGeneratorTest.java | 2 +-
.../euclidean/twod/PolygonsSetTest.java | 12 +-
.../geometry/euclidean/twod/Vector2DTest.java | 6 +-
.../hull/ConvexHullGenerator2DAbstractTest.java | 18 +-
.../geometry/partitioning/RegionDumper.java | 2 +-
.../geometry/partitioning/RegionParser.java | 2 +-
.../geometry/spherical/twod/CircleTest.java | 4 +-
.../math3/linear/Array2DRowRealMatrixTest.java | 2 +-
.../math3/linear/DiagonalMatrixTest.java | 6 +-
.../math3/linear/EigenDecompositionTest.java | 20 +-
.../math3/linear/HessenbergTransformerTest.java | 10 +-
.../MatrixDimensionMismatchExceptionTest.java | 2 +-
.../commons/math3/linear/MatrixUtilsTest.java | 16 +-
.../math3/linear/QRDecompositionTest.java | 2 +-
.../commons/math3/linear/RRQRSolverTest.java | 4 +-
.../RectangularCholeskyDecompositionTest.java | 2 +-
.../math3/linear/SchurTransformerTest.java | 6 +-
.../ml/clustering/DBSCANClustererTest.java | 10 +-
.../clustering/KMeansPlusPlusClustererTest.java | 12 +-
.../MultiKMeansPlusPlusClustererTest.java | 2 +-
.../evaluation/SumOfClusterVariancesTest.java | 4 +-
.../commons/math3/ml/neuralnet/NetworkTest.java | 4 +-
.../ml/neuralnet/OffsetFeatureInitializer.java | 2 +-
.../neuralnet/sofm/KohonenTrainingTaskTest.java | 2 +-
.../sofm/TravellingSalesmanSolver.java | 2 +-
.../commons/math3/ode/JacobianMatricesTest.java | 2 +-
.../math3/ode/events/EventStateTest.java | 16 +-
.../nonstiff/HighamHall54IntegratorTest.java | 2 +-
.../sampling/StepNormalizerOutputTestBase.java | 8 +-
.../math3/optim/SimplePointCheckerTest.java | 2 +-
.../math3/optim/SimpleValueCheckerTest.java | 2 +-
.../math3/optim/linear/SimplexSolverTest.java | 40 ++--
.../scalar/noderiv/BOBYQAOptimizerTest.java | 40 ++--
.../scalar/noderiv/CMAESOptimizerTest.java | 12 +-
...stractLeastSquaresOptimizerAbstractTest.java | 2 +-
.../vector/jacobian/CircleProblem.java | 2 +-
.../nonlinear/vector/jacobian/MinpackTest.java | 2 +-
.../optim/univariate/BrentOptimizerTest.java | 2 +-
.../MultiStartUnivariateOptimizerTest.java | 2 +-
.../SimpleUnivariateValueCheckerTest.java | 2 +-
.../optimization/SimplePointCheckerTest.java | 2 +-
.../optimization/SimpleValueCheckerTest.java | 2 +-
.../direct/BOBYQAOptimizerTest.java | 40 ++--
.../optimization/direct/CMAESOptimizerTest.java | 14 +-
.../fitting/GaussianFitterTest.java | 16 +-
...stractLeastSquaresOptimizerAbstractTest.java | 2 +-
...NonLinearConjugateGradientOptimizerTest.java | 2 +-
.../optimization/linear/SimplexSolverTest.java | 26 +--
.../univariate/BrentOptimizerTest.java | 2 +-
.../SimpleUnivariateValueCheckerTest.java | 2 +-
.../UnivariateMultiStartOptimizerTest.java | 2 +-
.../apache/commons/math3/primes/PrimesTest.java | 2 +-
.../random/AbstractRandomGeneratorTest.java | 4 +-
.../math3/random/BitsStreamGeneratorTest.java | 16 +-
.../CorrelatedRandomVectorGeneratorTest.java | 8 +-
.../math3/random/EmpiricalDistributionTest.java | 60 +++---
.../random/HaltonSequenceGeneratorTest.java | 4 +-
.../math3/random/MersenneTwisterTest.java | 4 +-
.../commons/math3/random/RandomAdaptorTest.java | 6 +-
.../random/RandomGeneratorAbstractTest.java | 2 +-
.../random/SobolSequenceGeneratorTest.java | 8 +-
.../math3/random/StableRandomGeneratorTest.java | 6 +-
.../UnitSphereRandomVectorGeneratorTest.java | 2 +-
.../commons/math3/random/ValueServerTest.java | 8 +-
.../commons/math3/random/Well19937aTest.java | 2 +-
.../commons/math3/random/Well19937cTest.java | 2 +-
.../commons/math3/random/Well44497aTest.java | 4 +-
.../commons/math3/random/Well44497bTest.java | 4 +-
.../commons/math3/random/Well512aTest.java | 2 +-
.../commons/math3/special/BesselJTest.java | 6 +-
.../apache/commons/math3/special/ErfTest.java | 54 ++---
.../commons/math3/stat/FrequencyTest.java | 36 ++--
.../commons/math3/stat/StatUtilsTest.java | 16 +-
.../stat/clustering/DBSCANClustererTest.java | 10 +-
.../clustering/KMeansPlusPlusClustererTest.java | 8 +-
.../SpearmansRankCorrelationTest.java | 4 +-
.../correlation/StorelessCovarianceTest.java | 10 +-
.../descriptive/DescriptiveStatisticsTest.java | 2 +-
.../StatisticalSummaryValuesTest.java | 2 +-
...torelessUnivariateStatisticAbstractTest.java | 2 +-
.../stat/descriptive/SummaryStatisticsTest.java | 20 +-
.../UnivariateStatisticAbstractTest.java | 4 +-
.../descriptive/rank/PSquarePercentileTest.java | 4 +-
.../stat/descriptive/rank/PercentileTest.java | 4 +-
.../stat/descriptive/summary/ProductTest.java | 2 +-
.../stat/descriptive/summary/SumLogTest.java | 4 +-
.../stat/descriptive/summary/SumSqTest.java | 2 +-
.../math3/stat/descriptive/summary/SumTest.java | 2 +-
.../commons/math3/stat/inference/GTestTest.java | 14 +-
.../inference/KolmogorovSmirnovTestTest.java | 141 +++++++++++--
.../stat/inference/MannWhitneyUTestTest.java | 14 +-
.../math3/stat/inference/TestUtilsTest.java | 6 +-
.../inference/WilcoxonSignedRankTestTest.java | 36 ++--
.../stat/interval/AgrestiCoullIntervalTest.java | 2 +-
.../BinomialConfidenceIntervalAbstractTest.java | 4 +-
.../interval/ClopperPearsonIntervalTest.java | 2 +-
.../math3/stat/interval/IntervalUtilsTest.java | 4 +-
.../NormalApproximationIntervalTest.java | 2 +-
.../stat/interval/WilsonScoreIntervalTest.java | 2 +-
.../math3/stat/ranking/NaturalRankingTest.java | 14 +-
.../GLSMultipleLinearRegressionTest.java | 44 ++---
.../MillerUpdatingRegressionTest.java | 34 ++--
.../MultipleLinearRegressionAbstractTest.java | 20 +-
.../OLSMultipleLinearRegressionTest.java | 88 ++++-----
.../stat/regression/SimpleRegressionTest.java | 2 +-
.../commons/math3/util/CombinationsTest.java | 4 +-
.../apache/commons/math3/util/FastMathTest.java | 26 +--
.../commons/math3/util/IncrementorTest.java | 2 +-
.../commons/math3/util/MathArraysTest.java | 95 +++++++--
.../math3/util/ResizableDoubleArrayTest.java | 18 +-
221 files changed, 1585 insertions(+), 1081 deletions(-)
----------------------------------------------------------------------