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Posted to dev@stanbol.apache.org by Gintautas Sulskus <gi...@gmail.com> on 2015/07/20 17:01:49 UTC
Showing custom entity types
Hi Devs,
My post is a follow-up of the "Showing custom entity types" thread [1]
In particular, I am interested where the classification is specified in the
eHealth example [2].
How do I annotate drug-related entities as "Drugs" rather than "Others". I
can't seem to find the exact configuration point in the example eHealth
code [3]. Would you kindly help me out with that?
[1] https://www.mail-archive.com/dev%40stanbol.apache.org/msg04048.html
[2] https://stanbol.apache.org/docs/trunk/customvocabulary.html
[3]
https://github.com/apache/stanbol/tree/17db70cb87ae5bbb905c1dbe76fbe4c0ca1dd90d/demos/ehealth
Best Regards,
Gin
Re: Showing custom entity types
Posted by Gintautas Sulskus <gi...@gmail.com>.
Hi Umutcan,
It works the way you described. Thanks very much!
Sometimes the assurance that one is on the right path is all what you need
:)
Best Wishes,
Gin
On Mon, Jul 20, 2015 at 7:07 PM, Umutcan Simsek <um...@mni.thm.de>
wrote:
> Hi Gin,
>
> I think your configuration is correct. As far as I remember, any rdf:type
> triple should appear in enhancement results. For the other triples you want
> to obtain from linked entity, you should define the triples to be
> dereferenced from configuration. The mapping you mention is mapping a
> property to rdfs:label, in order to enable engine to query values of those
> properties as well, but I don't think that is your problem.
>
> Can you post an example enhancement result?
>
> Best
>
> Umutcan
>
> Am 2015-07-20 19:44, schrieb Gintautas Sulskus:
>
>> Hi Umutcan,
>>
>> could you please elaborate a bit more on this?
>>
>> My stack:
>>
>> - Use a 6 year old Drugbank dataset from [1] for testing.
>> - Solr Yard with *ehealth.solrindex.zip* index configuration. Used
>> default indexer configuration.
>> - ManagedSite Yard Site with default configuration
>> - EntityHub Linking engine
>>
>>
>>
>> I reckon I need to modify a Type Mapping field in EntityHub Linking
>> engine?
>> E.g. {DrugStore field} > rdf:type?
>>
>> [1]
>> https://github.com/anjeve/lodd/tree/master/datasets/DrugBank/d2r%20server
>>
>> Best Regards,
>> Gin
>>
>> On Mon, Jul 20, 2015 at 4:44 PM, Umutcan Şimşek <
>> umutcan.simsek@mni.thm.de>
>> wrote:
>>
>> Hi,
>>>
>>> My solution to that to use an entity linking engine with a local custom
>>> vocabulary (ManagedSite). The EntityAnnotation created by the engine will
>>> contain rdf:type triples, after that you can show whichever type you
>>> want.
>>>
>>> Regards
>>> Umutcan
>>>
>>>
>>> On 07/20/2015 05:01 PM, Gintautas Sulskus wrote:
>>>
>>> Hi Devs,
>>>>
>>>> My post is a follow-up of the "Showing custom entity types" thread [1]
>>>>
>>>> In particular, I am interested where the classification is specified in
>>>> the
>>>> eHealth example [2].
>>>> How do I annotate drug-related entities as "Drugs" rather than
>>>> "Others". I
>>>> can't seem to find the exact configuration point in the example eHealth
>>>> code [3]. Would you kindly help me out with that?
>>>>
>>>> [1] https://www.mail-archive.com/dev%40stanbol.apache.org/msg04048.html
>>>> [2] https://stanbol.apache.org/docs/trunk/customvocabulary.html
>>>> [3]
>>>>
>>>>
>>>> https://github.com/apache/stanbol/tree/17db70cb87ae5bbb905c1dbe76fbe4c0ca1dd90d/demos/ehealth
>>>>
>>>> Best Regards,
>>>> Gin
>>>>
>>>>
>>>>
>>>
>
Re: Showing custom entity types
Posted by Umutcan Simsek <um...@mni.thm.de>.
Hi Gin,
I think your configuration is correct. As far as I remember, any
rdf:type triple should appear in enhancement results. For the other
triples you want to obtain from linked entity, you should define the
triples to be dereferenced from configuration. The mapping you mention
is mapping a property to rdfs:label, in order to enable engine to query
values of those properties as well, but I don't think that is your
problem.
Can you post an example enhancement result?
Best
Umutcan
Am 2015-07-20 19:44, schrieb Gintautas Sulskus:
> Hi Umutcan,
>
> could you please elaborate a bit more on this?
>
> My stack:
>
> - Use a 6 year old Drugbank dataset from [1] for testing.
> - Solr Yard with *ehealth.solrindex.zip* index configuration. Used
> default indexer configuration.
> - ManagedSite Yard Site with default configuration
> - EntityHub Linking engine
>
>
> I reckon I need to modify a Type Mapping field in EntityHub Linking
> engine?
> E.g. {DrugStore field} > rdf:type?
>
> [1]
> https://github.com/anjeve/lodd/tree/master/datasets/DrugBank/d2r%20server
>
> Best Regards,
> Gin
>
> On Mon, Jul 20, 2015 at 4:44 PM, Umutcan Şimşek
> <um...@mni.thm.de>
> wrote:
>
>> Hi,
>>
>> My solution to that to use an entity linking engine with a local
>> custom
>> vocabulary (ManagedSite). The EntityAnnotation created by the engine
>> will
>> contain rdf:type triples, after that you can show whichever type you
>> want.
>>
>> Regards
>> Umutcan
>>
>>
>> On 07/20/2015 05:01 PM, Gintautas Sulskus wrote:
>>
>>> Hi Devs,
>>>
>>> My post is a follow-up of the "Showing custom entity types" thread
>>> [1]
>>>
>>> In particular, I am interested where the classification is specified
>>> in
>>> the
>>> eHealth example [2].
>>> How do I annotate drug-related entities as "Drugs" rather than
>>> "Others". I
>>> can't seem to find the exact configuration point in the example
>>> eHealth
>>> code [3]. Would you kindly help me out with that?
>>>
>>> [1]
>>> https://www.mail-archive.com/dev%40stanbol.apache.org/msg04048.html
>>> [2] https://stanbol.apache.org/docs/trunk/customvocabulary.html
>>> [3]
>>>
>>> https://github.com/apache/stanbol/tree/17db70cb87ae5bbb905c1dbe76fbe4c0ca1dd90d/demos/ehealth
>>>
>>> Best Regards,
>>> Gin
>>>
>>>
>>
Re: Showing custom entity types
Posted by Gintautas Sulskus <gi...@gmail.com>.
Hi Umutcan,
could you please elaborate a bit more on this?
My stack:
- Use a 6 year old Drugbank dataset from [1] for testing.
- Solr Yard with *ehealth.solrindex.zip* index configuration. Used
default indexer configuration.
- ManagedSite Yard Site with default configuration
- EntityHub Linking engine
I reckon I need to modify a Type Mapping field in EntityHub Linking engine?
E.g. {DrugStore field} > rdf:type?
[1]
https://github.com/anjeve/lodd/tree/master/datasets/DrugBank/d2r%20server
Best Regards,
Gin
On Mon, Jul 20, 2015 at 4:44 PM, Umutcan Şimşek <um...@mni.thm.de>
wrote:
> Hi,
>
> My solution to that to use an entity linking engine with a local custom
> vocabulary (ManagedSite). The EntityAnnotation created by the engine will
> contain rdf:type triples, after that you can show whichever type you want.
>
> Regards
> Umutcan
>
>
> On 07/20/2015 05:01 PM, Gintautas Sulskus wrote:
>
>> Hi Devs,
>>
>> My post is a follow-up of the "Showing custom entity types" thread [1]
>>
>> In particular, I am interested where the classification is specified in
>> the
>> eHealth example [2].
>> How do I annotate drug-related entities as "Drugs" rather than "Others". I
>> can't seem to find the exact configuration point in the example eHealth
>> code [3]. Would you kindly help me out with that?
>>
>> [1] https://www.mail-archive.com/dev%40stanbol.apache.org/msg04048.html
>> [2] https://stanbol.apache.org/docs/trunk/customvocabulary.html
>> [3]
>>
>> https://github.com/apache/stanbol/tree/17db70cb87ae5bbb905c1dbe76fbe4c0ca1dd90d/demos/ehealth
>>
>> Best Regards,
>> Gin
>>
>>
>
Re: Showing custom entity types
Posted by Umutcan Şimşek <um...@mni.thm.de>.
Hi,
My solution to that to use an entity linking engine with a local custom
vocabulary (ManagedSite). The EntityAnnotation created by the engine
will contain rdf:type triples, after that you can show whichever type
you want.
Regards
Umutcan
On 07/20/2015 05:01 PM, Gintautas Sulskus wrote:
> Hi Devs,
>
> My post is a follow-up of the "Showing custom entity types" thread [1]
>
> In particular, I am interested where the classification is specified in the
> eHealth example [2].
> How do I annotate drug-related entities as "Drugs" rather than "Others". I
> can't seem to find the exact configuration point in the example eHealth
> code [3]. Would you kindly help me out with that?
>
> [1] https://www.mail-archive.com/dev%40stanbol.apache.org/msg04048.html
> [2] https://stanbol.apache.org/docs/trunk/customvocabulary.html
> [3]
> https://github.com/apache/stanbol/tree/17db70cb87ae5bbb905c1dbe76fbe4c0ca1dd90d/demos/ehealth
>
> Best Regards,
> Gin
>