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Posted to dev@airavata.apache.org by "Raminderjeet Singh (JIRA)" <ji...@apache.org> on 2013/05/24 17:00:26 UTC
[jira] [Commented] (AIRAVATA-857) Error while trying to query the
experiment data after few hours
[ https://issues.apache.org/jira/browse/AIRAVATA-857?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13666382#comment-13666382 ]
Raminderjeet Singh commented on AIRAVATA-857:
---------------------------------------------
Connection is getting dropped 1st time if you query after few hours. If you retry again it works. These is some connection held and not getting released. After the exception come the connection is released and everything works well.
> Error while trying to query the experiment data after few hours
> ---------------------------------------------------------------
>
> Key: AIRAVATA-857
> URL: https://issues.apache.org/jira/browse/AIRAVATA-857
> Project: Airavata
> Issue Type: Bug
> Reporter: Raminderjeet Singh
>
> OpenJPA gives error 1st time when i try to query the job status and if i run the same function again it works fine.
> [ERROR] Error while initializing the Airavata API
> <openjpa-2.2.0-r422266:1244990 fatal general error> org.apache.openjpa.persistence.PersistenceException: The last packet successfully received from the server was 65,137,412 milliseconds ago. The last packet sent successfully to the server was 65,137,412 milliseconds ago. is longer than the server configured value of 'wait_timeout'. You should consider either expiring and/or testing connection validity before use in your application, increasing the server configured values for client timeouts, or using the Connector/J connection property 'autoReconnect=true' to avoid this problem.
> at org.apache.openjpa.jdbc.sql.DBDictionary.narrow(DBDictionary.java:4918)
> at org.apache.openjpa.jdbc.sql.DBDictionary.newStoreException(DBDictionary.java:4878)
> at org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:136)
> at org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:110)
> at org.apache.openjpa.jdbc.sql.SQLExceptions.getStore(SQLExceptions.java:62)
> at org.apache.openjpa.jdbc.kernel.JDBCStoreManager.connect(JDBCStoreManager.java:949)
> at org.apache.openjpa.jdbc.kernel.JDBCStoreManager.getConnection(JDBCStoreManager.java:240)
> at org.apache.openjpa.jdbc.kernel.PreparedSQLStoreQuery$PreparedSQLExecutor.executeQuery(PreparedSQLStoreQuery.java:104)
> at org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:1005)
> at org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:863)
> at org.apache.openjpa.kernel.QueryImpl.execute(QueryImpl.java:794)
> at org.apache.openjpa.kernel.DelegatingQuery.execute(DelegatingQuery.java:542)
> at org.apache.openjpa.persistence.QueryImpl.execute(QueryImpl.java:286)
> at org.apache.openjpa.persistence.QueryImpl.getResultList(QueryImpl.java:302)
> at org.apache.airavata.persistance.registry.jpa.ResourceUtils.getConfigurations(ResourceUtils.java:206)
> at org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry.getConfigurationList(AiravataJPARegistry.java:156)
> at org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry.retrieveURIsFromConfiguration(AiravataJPARegistry.java:226)
> at org.apache.airavata.persistance.registry.jpa.impl.AiravataJPARegistry.getEventingServiceURI(AiravataJPARegistry.java:249)
> at org.apache.airavata.client.AiravataClient.createConfig(AiravataClient.java:115)
> at org.apache.airavata.client.AiravataClient.initialize(AiravataClient.java:144)
> at org.apache.airavata.client.AiravataAPIFactory.getAPI(AiravataAPIFactory.java:61)
> at org.apache.airavata.client.AiravataAPIFactory.getAPI(AiravataAPIFactory.java:43)
> at org.ogce.gram.job.AiravataJobStatus.getJobStatus(AiravataJobStatus.java:58)
> at org.ogce.gram.job.AiravataJobStatus.gramJobStatus(AiravataJobStatus.java:41)
> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
> at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
> at java.lang.reflect.Method.invoke(Method.java:597)
> at com.sun.jersey.spi.container.JavaMethodInvokerFactory$1.invoke(JavaMethodInvokerFactory.java:60)
> at com.sun.jersey.server.impl.model.method.dispatch.AbstractResourceMethodDispatchProvider$TypeOutInvoker._dispatch(AbstractResourceMethodDispatchProvider.java:185)
> at com.sun.jersey.server.impl.model.method.dispatch.ResourceJavaMethodDispatcher.dispatch(ResourceJavaMethodDispatcher.java:75)
> at com.sun.jersey.server.impl.uri.rules.HttpMethodRule.accept(HttpMethodRule.java:302)
> at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
> at com.sun.jersey.server.impl.uri.rules.ResourceClassRule.accept(ResourceClassRule.java:108)
> at com.sun.jersey.server.impl.uri.rules.RightHandPathRule.accept(RightHandPathRule.java:147)
> at com.sun.jersey.server.impl.uri.rules.RootResourceClassesRule.accept(RootResourceClassesRule.java:84)
> at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1480)
> at com.sun.jersey.server.impl.application.WebApplicationImpl._handleRequest(WebApplicationImpl.java:1411)
> at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1360)
> at com.sun.jersey.server.impl.application.WebApplicationImpl.handleRequest(WebApplicationImpl.java:1350)
> at com.sun.jersey.spi.container.servlet.WebComponent.service(WebComponent.java:416)
> at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:538)
> at com.sun.jersey.spi.container.servlet.ServletContainer.service(ServletContainer.java:716)
> at javax.servlet.http.HttpServlet.service(HttpServlet.java:728)
> at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:305)
> at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
> at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
> at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
> at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:472)
> at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
> at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
> at org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:947)
> at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
> at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
> at org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1009)
> at org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589)
> at org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:310)
> at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
> at java.lang.Thread.run(Thread.java:662)
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