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Posted to commits@airavata.apache.org by sm...@apache.org on 2015/06/04 21:06:41 UTC
[4/8] airavata git commit: moving resources into src
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/NOTICE
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diff --git a/distribution/src/main/resources/NOTICE b/distribution/src/main/resources/NOTICE
new file mode 100644
index 0000000..fa7cba5
--- /dev/null
+++ b/distribution/src/main/resources/NOTICE
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+Apache Airavata
+Copyright 2014 The Apache Software Foundation
+
+This product includes software developed at
+The Apache Software Foundation (http://www.apache.org/).
+
+===============================================================================
+Apache Xerces Java Notice:
+
+ Portions of this software were originally based on the following:
+ - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
+ - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
+ - voluntary contributions made by Paul Eng on behalf of the
+ Apache Software Foundation that were originally developed at iClick, Inc.,
+ software copyright (c) 1999.
+
+================================================================================
+Apache XmlBeans Notice:
+
+ Portions of this software were originally based on the following:
+ - software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
+
+ Aside from contributions to the Apache XMLBeans project, this
+ software also includes:
+
+ - one or more source files from the Apache Xerces-J and Apache Axis
+ products, Copyright (c) 1999-2003 Apache Software Foundation
+
+ - W3C XML Schema documents Copyright 2001-2003 (c) World Wide Web
+ Consortium (Massachusetts Institute of Technology, European Research
+ Consortium for Informatics and Mathematics, Keio University)
+
+ - resolver.jar from Apache Xml Commons project,
+ Copyright (c) 2001-2003 Apache Software Foundation
+
+ - Piccolo XML Parser for Java from http://piccolo.sourceforge.net/,
+ Copyright 2002 Yuval Oren under the terms of the Apache Software License 2.0
+
+ - JSR-173 Streaming API for XML from http://sourceforge.net/projects/xmlpullparser/,
+ Copyright 2005 BEA under the terms of the Apache Software License 2.0
+
+=========================================================================================
+Apache Axis2 Notice: (axis2-*, mex-1.5.1-impl)
+
+Portions Copyright 2006 International Business Machines Corp.
+Portions Copyright 2005-2007 WSO2, Inc.
+
+This product also includes schemas and specification developed by:
+- the W3C consortium (http://www.w3c.org)
+
+This product also includes WS-* schemas developed by International
+Business Machines Corporation, Microsoft Corporation, BEA Systems,
+TIBCO Software, SAP AG, Sonic Software, and VeriSign
+
+This product also includes a WSDL developed by salesforce.com
+- Copyright 1999-2006 salesforce.com, inc.
+Portions of the included xmlbeans library were originally based on the following:
+- software copyright (c) 2000-2003, BEA Systems, <http://www.bea.com/>.
+
+====================================================================================
+Apache Derby Notice:
+
+Portions of Derby were originally developed by
+International Business Machines Corporation and are
+licensed to the Apache Software Foundation under the
+"Software Grant and Corporate Contribution License Agreement",
+informally known as the "Derby CLA".
+The following copyright notice(s) were affixed to portions of the code
+with which this file is now or was at one time distributed
+and are placed here unaltered.
+
+(C) Copyright 1997,2004 International Business Machines Corporation. All rights reserved.
+
+(C) Copyright IBM Corp. 2003.
+
+=======================
+
+The portion of the functionTests under 'nist' was originally
+developed by the National Institute of Standards and Technology (NIST),
+an agency of the United States Department of Commerce, and adapted by
+International Business Machines Corporation in accordance with the NIST
+Software Acknowledgment and Redistribution document at
+http://www.itl.nist.gov/div897/ctg/sql_form.htm
+
+========================
+
+The JDBC apis for small devices and JDBC3 (under java/stubs/jsr169 and
+java/stubs/jdbc3) were produced by trimming sources supplied by the
+Apache Harmony project. In addition, the Harmony SerialBlob and
+SerialClob implementations are used. The following notice covers the Harmony sources:
+
+Portions of Harmony were originally developed by
+Intel Corporation and are licensed to the Apache Software
+Foundation under the "Software Grant and Corporate Contribution
+License Agreement", informally known as the "Intel Harmony CLA".
+
+=============================================================================
+Apache Woden Notice:
+
+ This product also includes software developed by :
+
+ - IBM Corporation (http://www.ibm.com),
+ WSDL4J was the initial code contribution for the Apache Woden
+ project and some of the WSDL4J design and code has been reused.
+ - The W3C Consortium (http://www.w3c.org),
+ Common W3C XML Schema and DTD files are packaged with Apache Woden.
+
+ Please read the different LICENSE files present in the root directory of
+ this distribution.
+
+=========================================================================
+Woodstox Notice:
+
+This product includes software developed by the Woodstox Project
+(http://woodstox.codehaus.org/)
+
+This product currently only contains code developed by authors
+of specific components, as identified by the source code files.
+
+Since product implements StAX API, it has dependencies to StAX API
+classes.
+
+For additional credits (generally to people who reported problems)
+see CREDITS file.
+
+===========================================================================
+Apache xml-commons xml-apis Notice:
+
+ Portions of this software were originally based on the following:
+ - software copyright (c) 1999, IBM Corporation., http://www.ibm.com.
+ - software copyright (c) 1999, Sun Microsystems., http://www.sun.com.
+ - software copyright (c) 2000 World Wide Web Consortium, http://www.w3.org
+
+================================================================================================
+Apache Xalan Notice:
+
+Portions of this software was originally based on the following:
+ - software copyright (c) 1999-2002, Lotus Development Corporation., http://www.lotus.com.
+ - software copyright (c) 2001-2002, Sun Microsystems., http://www.sun.com.
+ - software copyright (c) 2003, IBM Corporation., http://www.ibm.com.
+ - voluntary contributions made by Ovidiu Predescu (ovidiu@cup.hp.com) on behalf of the
+ Apache Software Foundation and was originally developed at Hewlett Packard Company.
+================================================================================================
+Apache OpenJPA Notice:
+
+OpenJPA includes software developed by the SERP project
+Copyright (c) 2002-2006, A. Abram White. All rights reserved.
+
+OpenJPA includes the persistence and orm schemas from the JPA specifications.
+Copyright 2005-2009 Sun Microsystems, Inc. All rights reserved.
+OpenJPA elects to include this software in this distribution under the
+CDDL license. You can obtain a copy of the License at:
+ https://glassfish.dev.java.net/public/CDDL+GPL.html
+The source code is available at:
+ https://glassfish.dev.java.net/source/browse/glassfish/
+
+OpenJPA includes software written by Miroslav Nachev
+OpenJPA uses test code written by Charles Tillman.
+================================================================================================
+Apache XmlSchema Notice:
+
+Portions Copyright 2006 International Business Machines Corp.
+================================================================================================
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/README
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diff --git a/distribution/src/main/resources/README b/distribution/src/main/resources/README
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+Apache Airavata Source - README.txt
+Licensed under Apache License 2.0 - http://www.apache.org/licenses/LICENSE-2.0
+--------------------------------------------------------------------------------
+
+About
+=====
+Apache Airavata, a software framework to executing and managing computational jobs on
+distributed computing resources including local clusters, supercomputers, national grids,
+academic and commercial clouds. Airavata builds on general concepts of service oriented computing,
+distributed messaging, and workflow composition and orchestration. Airavata bundles a server package
+with an API, client software development Kits and a general purpose GUI XBaya as a application registration, workflow
+construction execution and monitoring. XBaya GUI also provides capabilities to access the workflow
+produced data.
+
+Contact
+========
+For additional information about Apache Airavata, please contact the user or dev mailing lists:
+http://airavata.apache.org/community/mailing-lists.html
+
+Description of Airavata Directory Structure
+==================================
+ - airavata-api
+ This directory contains Airavata API related data models, api methods, generated server skeletons, client stubs, server implementations and client samples.
+
+ - modules
+ This contains the source code of all the airavata maven projects organized as libraries, services and distributions
+
+ - samples
+ This contains all the system wide samples provided in Airavata distribution. All the sample are having its README file
+ So users have to refer each readme file before running each sample.
+
+ - tools
+ This contains source code libraries that can enhance Airavata features.
+
+ - README
+ This document.
+
+ - RELEASE_NOTES
+ The describe the key features and know issues with the current release.
+
+ - INSTALL
+ This document will contain information on installing Apache-Airavata.
+
+Airavata Source Distribution Directory Structure
+================================================
+
+ AIRAVATA_MASTER
+ ├── airavata-api
+ ├── modules
+ │ ├── airavata-client
+ │ ├── app-catalog
+ │ ├── commons
+ │ │ ├── gfac-schema
+ │ │ ├── utils
+ │ │ ├── workflow-execution-context
+ │ │ └── workflow-tracking
+ │ ├── credential-store-service
+ │ ├── distribution
+ │ │ ├── api-server
+ │ │ ├── client
+ │ │ ├── gfac-server
+ │ │ ├── orchestrator-server
+ │ │ ├── server
+ │ │ └── release
+ │ │ └── xbaya-gui
+ │ ├── gfac
+ │ │ ├── airavata-gfac-service
+ │ │ ├── gfac-bes
+ │ │ ├── gfac-core
+ │ │ ├── gfac-ec2
+ │ │ ├── gfac-gram
+ │ │ ├── gfac-gsissh
+ │ │ ├── gfac-hadoop
+ │ │ ├── gfac-local
+ │ │ ├── gfac-monitor
+ │ │ ├── gfac-ssh
+ │ │ ├── gfac-thrift-descriptions
+ │ ├── integration-tests
+ │ ├── messaging
+ │ ├── orchestrator
+ │ ├── registry
+ │ │ ├── airavata-jpa-registry
+ │ │ ├── registry-cpi
+ │ ├── security
+ │ ├── credential-store
+ │ ├── server
+ │ ├── test-suite
+ │ ├── workflow-model
+ │ │ ├── workflow-engine
+ │ │ ├── workflow-model-component-node
+ │ │ └── workflow-model-core
+ │ ├── ws-messenger
+ │ │ ├── commons
+ │ │ ├── distribution
+ │ │ ├── messagebox
+ │ │ ├── messagebroker
+ │ │ ├── message-monitor
+ │ │ └── samples
+ │ └── xbaya-gui
+ ├── samples
+ ├── tools
+ │ ├── gsissh
+ │ ├── gsissh-cli-tools
+ │ ├── phoebus-integration
+ │ └── registry-migrate
+ ├── INSTALL
+ ├── LICENSE
+ ├── NOTICE
+ ├── README
+ └── RELEASE_NOTES
+
+Available Binary Distributions
+==============================
+
+Server Distributions
+--------------------
+* Airavata Server
+ The Airavata Server binary distribution allows you to run a standalone Airavata Server which includes all the airavata services
+ shipped with a default derby database as the backend registry. For stable purposes, a mysql configuration is recommended.
+
+* Airavata API Server
+ This is the server that contains Airavata API Server.
+
+* Airavata Orchestrator Server
+ This is the stand-alone orchestrator server
+
+* Airavata GFac Server
+ This is the standalone GFac Server
+
+Client Distributions
+--------------------
+* Airavata XBaya
+ The Airavata XBaya distribution is a client GUI application with features to register applications as web services, construct workflows,
+ execute and monitor workflows and browse the generated results from the airavata registry.
+
+* Airavata Client
+ The Airavata Client distribution is a set of libraries and configurations files that allow a 3rd party application to programatically
+ access Airavata functionality through Airavata API.
+
+ How to test and run samples
+===========================
+* If you built Airavata from source, and if you see "BUILD SUCCESS", then the test cases should have passes.
+* The test cases are beyond unit level, they startup embedded services and run through basic workflow use cases.
+* To walk through Airavata features, follow "XBAYA Quick-Start Tutorial" tutorial at https://cwiki.apache.org/confluence/display/AIRAVATA/XBAYA+Quick-Start+Tutorial.
+* For advanced use cases, please contact mailing lists - http://airavata.apache.org/community/mailing-lists.html
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/bin/airavata-server.bat
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diff --git a/distribution/src/main/resources/bin/airavata-server.bat b/distribution/src/main/resources/bin/airavata-server.bat
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+@echo off
+rem Licensed to the Apache Software Foundation (ASF) under one
+rem or more contributor license agreements. See the NOTICE file
+rem distributed with this work for additional information
+rem regarding copyright ownership. The ASF licenses this file
+rem to you under the Apache License, Version 2.0 (the
+rem "License"); you may not use this file except in compliance
+rem with the License. You may obtain a copy of the License at
+rem
+rem http://www.apache.org/licenses/LICENSE-2.0
+rem
+rem Unless required by applicable law or agreed to in writing,
+rem software distributed under the License is distributed on an
+rem "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+rem KIND, either express or implied. See the License for the
+rem specific language governing permissions and limitations
+rem under the License.
+
+setlocal EnableDelayedExpansion
+
+call "%~dp0"setenv.bat
+
+:loop
+if ""%1""==""-xdebug"" goto xdebug
+if ""%1""==""-security"" goto security
+if ""%1""=="""" goto run
+goto help
+
+:xdebug
+set JAVA_OPTS= %JAVA_OPTS% -Xdebug -Xnoagent -Xrunjdwp:transport=dt_socket,server=y,address=8000
+shift
+goto loop
+
+:security
+set JAVA_OPTS=%JAVA_OPTS% -Djava.security.manager -Djava.security.policy=%AIRAVATA_HOME%\conf\axis2.policy -Daxis2.home=%AIRAVATA_HOME%
+shift
+goto loop
+
+:help
+echo Usage: %0 [-options]
+echo.
+echo where options include:
+echo -xdebug Start Airavata Server under JPDA debugger
+echo -security Enable Java 2 security
+echo -h Help
+goto end
+
+:run
+cd "%AIRAVATA_HOME%\bin"
+set LOGO_FILE="logo.txt"
+if exist "%LOGO_FILE%" type "%LOGO_FILE%"
+
+java %JAVA_OPTS% -classpath "%XBAYA_CLASSPATH%" -Djava.endorsed.dirs="%AIRAVATA_HOME%/lib/endorsed":"%JAVA_HOME%/jre/lib/endorsed":"%JAVA_HOME%/lib/endorsed" org.apache.airavata.server.ServerMain -repo "%AIRAVATA_HOME%"/repository/services -conf "%AIRAVATA_HOME%"/conf/axis2.xml %*
+
+:end
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/bin/airavata-server.sh
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diff --git a/distribution/src/main/resources/bin/airavata-server.sh b/distribution/src/main/resources/bin/airavata-server.sh
new file mode 100755
index 0000000..885dcd4
--- /dev/null
+++ b/distribution/src/main/resources/bin/airavata-server.sh
@@ -0,0 +1,118 @@
+#!/bin/bash
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+. `dirname $0`/setenv.sh
+cd $AIRAVATA_HOME/bin
+LOGO_FILE="logo.txt"
+
+JAVA_OPTS=""
+AIRAVATA_COMMAND=""
+IS_DAEMON_MODE=false
+LOGO=true
+STOP=false
+FORCE=false
+#SERVERS="--servers=apiserver,orchestrator,gfac,credentialstore"
+for var in "$@"
+do
+ case $var in
+ -xdebug)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND"
+ JAVA_OPTS="$JAVA_OPTS -Xdebug -Xnoagent -Xrunjdwp:transport=dt_socket,server=y,address=8000"
+ shift
+ ;;
+ -security)
+ JAVA_OPTS="$JAVA_OPTS -Djava.security.manager -Djava.security.policy=$AIRAVATA_HOME/conf/axis2.policy -Daxis2.home=$AIRAVATA_HOME"
+ shift
+ ;;
+ start)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND"
+ IS_DAEMON_MODE=true
+ shift
+ ;;
+ stop)
+ LOGO=false
+ STOP=true
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $var"
+ shift
+ ;;
+ --force)
+ FORCE=true
+ shift
+ ;;
+ -nologo)
+ LOGO=false
+ shift
+ ;;
+ -h)
+ echo "Usage: airavata-server.sh [command-options]"
+ echo "command options:"
+ echo " start Start server in daemon mode"
+ echo " stop [--force] Stop all airavata servers."
+ echo " --<key>[=<value>] Server setting(s) to override or introduce (overrides values in airavata-server.properties)"
+ echo " -nologo Do not show airavata logo"
+ echo " -xdebug Start Airavata Server under JPDA debugger"
+ echo " -security Enable Java 2 security"
+ echo " -h Display this help and exit"
+ shift
+ exit 0
+ ;;
+ *)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $var"
+ shift
+ esac
+done
+if $LOGO ; then
+ if [ -e $LOGO_FILE ]
+ then
+ cat $LOGO_FILE
+ fi
+fi
+if $STOP && $FORCE ;
+then
+ for f in `find . -name "server-start_*"`; do
+ f_split=(${f//_/ });
+ echo "Found process file : $f"
+ echo -n " Sending kill signals to process ${f_split[1]}..."
+ out=`kill -9 ${f_split[1]} 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ echo -n " Removing process file..."
+ out=`rm $f 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ done
+else
+ if $IS_DAEMON_MODE ; then
+ echo "Starting airavata server in daemon mode..."
+ nohup java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $* > airavata-server.out &
+ else
+ java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $*
+ fi
+fi
+
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/bin/api-server.sh
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diff --git a/distribution/src/main/resources/bin/api-server.sh b/distribution/src/main/resources/bin/api-server.sh
new file mode 100755
index 0000000..872c854
--- /dev/null
+++ b/distribution/src/main/resources/bin/api-server.sh
@@ -0,0 +1,118 @@
+#!/bin/bash
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+. `dirname $0`/setenv.sh
+cd $AIRAVATA_HOME/bin
+LOGO_FILE="logo.txt"
+
+JAVA_OPTS=""
+AIRAVATA_COMMAND=""
+IS_DAEMON_MODE=false
+LOGO=true
+STOP=false
+FORCE=false
+SERVERS="--servers=apiserver"
+for var in "$@"
+do
+ case $var in
+ -xdebug)
+ JAVA_OPTS="$JAVA_OPTS -Xdebug -Xnoagent -Xrunjdwp:transport=dt_socket,server=y,address=8000"
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
+ shift
+ ;;
+ -security)
+ JAVA_OPTS="$JAVA_OPTS -Djava.security.manager -Djava.security.policy=$AIRAVATA_HOME/conf/axis2.policy -Daxis2.home=$AIRAVATA_HOME"
+ shift
+ ;;
+ start)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
+ IS_DAEMON_MODE=true
+ shift
+ ;;
+ stop)
+ LOGO=false
+ STOP=true
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $var"
+ shift
+ ;;
+ --force)
+ FORCE=true
+ shift
+ ;;
+ -nologo)
+ LOGO=false
+ shift
+ ;;
+ -h)
+ echo "Usage: airavata-server.sh [command-options]"
+ echo "command options:"
+ echo " start Start server in daemon mode"
+ echo " stop [--force] Stop all airavata servers."
+ echo " --<key>[=<value>] Server setting(s) to override or introduce (overrides values in airavata-server.properties)"
+ echo " -nologo Do not show airavata logo"
+ echo " -xdebug Start Airavata Server under JPDA debugger"
+ echo " -security Enable Java 2 security"
+ echo " -h Display this help and exit"
+ shift
+ exit 0
+ ;;
+ *)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS $var"
+ shift
+ esac
+done
+if $LOGO ; then
+ if [ -e $LOGO_FILE ]
+ then
+ cat $LOGO_FILE
+ fi
+fi
+if $STOP && $FORCE ;
+then
+ for f in `find . -name "server-start_*"`; do
+ f_split=(${f//_/ });
+ echo "Found process file : $f"
+ echo -n " Sending kill signals to process ${f_split[1]}..."
+ out=`kill -9 ${f_split[1]} 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ echo -n " Removing process file..."
+ out=`rm $f 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ done
+else
+ if $IS_DAEMON_MODE ; then
+ echo "Starting airavata server in daemon mode..."
+ nohup java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $* > api-server.out &
+ else
+ java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $*
+ fi
+fi
+
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/bin/derby.sh
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/bin/derby.sh b/distribution/src/main/resources/bin/derby.sh
new file mode 100644
index 0000000..134f7b9
--- /dev/null
+++ b/distribution/src/main/resources/bin/derby.sh
@@ -0,0 +1,23 @@
+#!/bin/sh
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+
+# http://www.apache.org/licenses/LICENSE-2.0
+
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+. `dirname $0`/setenv.sh
+export DERBY_HOME=$AIRAVATA_HOME/standalone-server
+cd $AIRAVATA_HOME/bin
+./startNetworkServer $*
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/bin/gfac-server.sh
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/bin/gfac-server.sh b/distribution/src/main/resources/bin/gfac-server.sh
new file mode 100755
index 0000000..839ef4e
--- /dev/null
+++ b/distribution/src/main/resources/bin/gfac-server.sh
@@ -0,0 +1,118 @@
+#!/bin/bash
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+. `dirname $0`/setenv.sh
+cd $AIRAVATA_HOME/bin
+LOGO_FILE="logo.txt"
+
+JAVA_OPTS=""
+AIRAVATA_COMMAND=""
+IS_DAEMON_MODE=false
+LOGO=true
+STOP=false
+FORCE=false
+SERVERS="--servers=gfac"
+for var in "$@"
+do
+ case $var in
+ -xdebug)
+ JAVA_OPTS="$JAVA_OPTS -Xdebug -Xnoagent -Xrunjdwp:transport=dt_socket,server=y,address=8000"
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
+ shift
+ ;;
+ -security)
+ JAVA_OPTS="$JAVA_OPTS -Djava.security.manager -Djava.security.policy=$AIRAVATA_HOME/conf/axis2.policy -Daxis2.home=$AIRAVATA_HOME"
+ shift
+ ;;
+ start)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
+ IS_DAEMON_MODE=true
+ shift
+ ;;
+ stop)
+ LOGO=false
+ STOP=true
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $var"
+ shift
+ ;;
+ --force)
+ FORCE=true
+ shift
+ ;;
+ -nologo)
+ LOGO=false
+ shift
+ ;;
+ -h)
+ echo "Usage: airavata-server.sh [command-options]"
+ echo "command options:"
+ echo " start Start server in daemon mode"
+ echo " stop [--force] Stop all airavata servers."
+ echo " --<key>[=<value>] Server setting(s) to override or introduce (overrides values in airavata-server.properties)"
+ echo " -nologo Do not show airavata logo"
+ echo " -xdebug Start Airavata Server under JPDA debugger"
+ echo " -security Enable Java 2 security"
+ echo " -h Display this help and exit"
+ shift
+ exit 0
+ ;;
+ *)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS $var"
+ shift
+ esac
+done
+if $LOGO ; then
+ if [ -e $LOGO_FILE ]
+ then
+ cat $LOGO_FILE
+ fi
+fi
+if $STOP && $FORCE ;
+then
+ for f in `find . -name "server-start_*"`; do
+ f_split=(${f//_/ });
+ echo "Found process file : $f"
+ echo -n " Sending kill signals to process ${f_split[1]}..."
+ out=`kill -9 ${f_split[1]} 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ echo -n " Removing process file..."
+ out=`rm $f 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ done
+else
+ if $IS_DAEMON_MODE ; then
+ echo "Starting airavata server in daemon mode..."
+ nohup java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $* > gfac-server.out &
+ else
+ java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $*
+ fi
+fi
+
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/bin/logo.txt
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/bin/logo.txt b/distribution/src/main/resources/bin/logo.txt
new file mode 100644
index 0000000..e886438
--- /dev/null
+++ b/distribution/src/main/resources/bin/logo.txt
@@ -0,0 +1,34 @@
+...._....................._..............._...._......................_.........
+.../ \..._.__...__._..___| |__...___...../ \..(_)_.__.__.___...____._|.|_.__._..
+../ _ \.| '_ \./ _` |/ __| '_ \./ _ \.../ _ \.| | '__/ _` \ \./ / _` | __/ _` |.
+./ ___ \| |_) | (_| | (__| |.| | __/../ ___ \| | |.| (_| |\ V / (_| | || (_| |.
+/_/...\_\ .__/.\__,_|\___|_|.|_|\___|./_/...\_\_|_|..\__,_|.\_/.\__,_|\__\__,_|.
+........|_|.....................................................................
+................................................................................
+................,+????++~..~~++..+????????+??++.++~...~+=???+++.................
+..............:???????....:::...~??????????????.~..::...=????????...............
+............????????..~~..?????..??????????????.?????..~~~.~???????.............
+...........?????????I,~I~~??????.+????????????.~??????~=~..?????????~...........
+.........?????++??????..????????:.??????????I..????????..????????+????..........
+........??.....???????....???????...???????+..+??????+.I.????????.....?,........
+........????==????????..??..?????..=???????=..?????,.=+?.?????????===??=........
+......=??????????+????..+??=.???=.~??????????,.???=,???,.????=+??????????.......
+....??????????+...+I++..???,=...:??????????????.....+??..++I?+..,??????????.....
+....???????=??..........??..+??.:=:.???????......??..??=..........?=???????=....
+....??????..?...........+?..???.....???????......???.??...........~=.??????=....
+....~???~.~..............?..???.~=..,??????...7..???.?.:..............~????:....
+...7....7 ...............?..????. ...??????... .????.?.?.............I ..:.:....
+.....+7=,.+?................????:,I...?????..=.?????.?.............??~.=7+......
+..........????..............??????~...~??..~~??????..?...........+???,..........
+...........???............=.+???????,.?+:.?????????..+...........???+...........
+............??............?,.??????.,??..??????????.,............???............
+...........??,.............=.,????.?+....????????I.I..............=?............
+..........I?..................+??.:?~.....=??????..................??...........
+..........??...?...............??.:?=......??????..............?...??...........
+............++?..............?.????...?....??????.+..............++I............
+.............................?.??????~....???????.?.............................
+............................~~.??????......??????...............................
+.............................=???????......???????+.............................
+..........................=I??++?+++?......?+++++++?+...........................
+..........................,..77..77......... .. ...7..........................
+................................................................................
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/bin/orchestrator-server.sh
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/bin/orchestrator-server.sh b/distribution/src/main/resources/bin/orchestrator-server.sh
new file mode 100755
index 0000000..5fa73e7
--- /dev/null
+++ b/distribution/src/main/resources/bin/orchestrator-server.sh
@@ -0,0 +1,118 @@
+#!/bin/bash
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+. `dirname $0`/setenv.sh
+cd $AIRAVATA_HOME/bin
+LOGO_FILE="logo.txt"
+
+JAVA_OPTS=""
+AIRAVATA_COMMAND=""
+IS_DAEMON_MODE=false
+LOGO=true
+STOP=false
+FORCE=false
+SERVERS="--servers=orchestrator"
+for var in "$@"
+do
+ case $var in
+ -xdebug)
+ JAVA_OPTS="$JAVA_OPTS -Xdebug -Xnoagent -Xrunjdwp:transport=dt_socket,server=y,address=8000"
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
+ shift
+ ;;
+ -security)
+ JAVA_OPTS="$JAVA_OPTS -Djava.security.manager -Djava.security.policy=$AIRAVATA_HOME/conf/axis2.policy -Daxis2.home=$AIRAVATA_HOME"
+ shift
+ ;;
+ start)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
+ IS_DAEMON_MODE=true
+ shift
+ ;;
+ stop)
+ LOGO=false
+ STOP=true
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $var"
+ shift
+ ;;
+ --force)
+ FORCE=true
+ shift
+ ;;
+ -nologo)
+ LOGO=false
+ shift
+ ;;
+ -h)
+ echo "Usage: airavata-server.sh [command-options]"
+ echo "command options:"
+ echo " start Start server in daemon mode"
+ echo " stop [--force] Stop all airavata servers."
+ echo " --<key>[=<value>] Server setting(s) to override or introduce (overrides values in airavata-server.properties)"
+ echo " -nologo Do not show airavata logo"
+ echo " -xdebug Start Airavata Server under JPDA debugger"
+ echo " -security Enable Java 2 security"
+ echo " -h Display this help and exit"
+ shift
+ exit 0
+ ;;
+ *)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS $var"
+ shift
+ esac
+done
+if $LOGO ; then
+ if [ -e $LOGO_FILE ]
+ then
+ cat $LOGO_FILE
+ fi
+fi
+if $STOP && $FORCE ;
+then
+ for f in `find . -name "server-start_*"`; do
+ f_split=(${f//_/ });
+ echo "Found process file : $f"
+ echo -n " Sending kill signals to process ${f_split[1]}..."
+ out=`kill -9 ${f_split[1]} 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ echo -n " Removing process file..."
+ out=`rm $f 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ done
+else
+ if $IS_DAEMON_MODE ; then
+ echo "Starting airavata server in daemon mode..."
+ nohup java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $* > orchestrator-server.out &
+ else
+ java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $*
+ fi
+fi
+
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/bin/setenv.bat
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/bin/setenv.bat b/distribution/src/main/resources/bin/setenv.bat
new file mode 100644
index 0000000..223f8cd
--- /dev/null
+++ b/distribution/src/main/resources/bin/setenv.bat
@@ -0,0 +1,43 @@
+rem Licensed to the Apache Software Foundation (ASF) under one
+rem or more contributor license agreements. See the NOTICE file
+rem distributed with this work for additional information
+rem regarding copyright ownership. The ASF licenses this file
+rem to you under the Apache License, Version 2.0 (the
+rem "License"); you may not use this file except in compliance
+rem with the License. You may obtain a copy of the License at
+rem
+rem http://www.apache.org/licenses/LICENSE-2.0
+rem
+rem Unless required by applicable law or agreed to in writing,
+rem software distributed under the License is distributed on an
+rem "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+rem KIND, either express or implied. See the License for the
+rem specific language governing permissions and limitations
+rem under the License.
+
+@echo off
+
+:checkJava
+if "%JAVA_HOME%" == "" goto noJavaHome
+if not exist "%JAVA_HOME%\bin\java.exe" goto noJavaHome
+goto initialize
+
+:noJavaHome
+echo You must set the JAVA_HOME environment variable before running Airavata.
+goto end
+
+:initialize
+if "%AIRAVATA_HOME%"=="" set AIRAVATA_HOME=%~sdp0..
+SET curDrive=%cd:~0,1%
+SET airavataDrive=%AIRAVATA_HOME:~0,1%
+if not "%curDrive%" == "%airavataDrive%" %airavataDrive%:
+goto updateClasspath
+
+rem ----- update classpath -----------------------------------------------------
+:updateClasspath
+cd %AIRAVATA_HOME%
+set XBAYA_CLASSPATH=
+FOR %%C in ("%AIRAVATA_HOME%\lib\*.jar") DO set XBAYA_CLASSPATH=!XBAYA_CLASSPATH!;..\lib\%%~nC%%~xC
+FOR %%C in ("%AIRAVATA_HOME%\repository\services\*.jar") DO set XBAYA_CLASSPATH=!XBAYA_CLASSPATH!;..\repository\services\%%~nC%%~xC
+
+:end
\ No newline at end of file
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/bin/setenv.sh
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/bin/setenv.sh b/distribution/src/main/resources/bin/setenv.sh
new file mode 100755
index 0000000..84673db
--- /dev/null
+++ b/distribution/src/main/resources/bin/setenv.sh
@@ -0,0 +1,77 @@
+#!/bin/sh
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+
+# Get standard environment variables
+# if JAVA_HOME is not set we're not happy
+if [ -z "$JAVA_HOME" ]; then
+ echo "You must set the JAVA_HOME variable before running Airavata Scripts."
+ exit 1
+fi
+
+# OS specific support. $var _must_ be set to either true or false.
+cygwin=false
+os400=false
+case "`uname`" in
+CYGWIN*) cygwin=true;;
+OS400*) os400=true;;
+esac
+
+# resolve links - $0 may be a softlink
+PRG="$0"
+
+while [ -h "$PRG" ]; do
+ ls=`ls -ld "$PRG"`
+ link=`expr "$ls" : '.*-> \(.*\)$'`
+ if expr "$link" : '.*/.*' > /dev/null; then
+ PRG="$link"
+ else
+ PRG=`dirname "$PRG"`/"$link"
+ fi
+done
+
+
+PRGDIR=`dirname "$PRG"`
+
+# Only set AIRAVATA_HOME if not already set
+[ -z "$AIRAVATA_HOME" ] && AIRAVATA_HOME=`cd "$PRGDIR/.." ; pwd`
+
+XBAYA_CLASSPATH=""
+
+
+
+for f in "$AIRAVATA_HOME"/lib/*.jar
+do
+ XBAYA_CLASSPATH="$XBAYA_CLASSPATH":$f
+done
+
+for f in "$AIRAVATA_HOME"/repository/services/*.jar
+do
+ XBAYA_CLASSPATH="$XBAYA_CLASSPATH":$f
+done
+
+XBAYA_CLASSPATH="$XBAYA_HOME":"$XBAYA_HOME/conf":"$XBAYA_CLASSPATH":"$CLASSPATH"
+
+
+
+
+export AIRAVATA_HOME
+export XBAYA_CLASSPATH
+
+
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/bin/startNetworkServer
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/bin/startNetworkServer b/distribution/src/main/resources/bin/startNetworkServer
new file mode 100644
index 0000000..808566c
--- /dev/null
+++ b/distribution/src/main/resources/bin/startNetworkServer
@@ -0,0 +1,189 @@
+#!/bin/sh
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+
+# http://www.apache.org/licenses/LICENSE-2.0
+
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+if [ -n "$derby_common_debug" ] ; then
+ set -x
+fi
+
+# OS specific support. $var _must_ be set to either true or false.
+cygwin=false;
+darwin=false;
+case "`uname`" in
+ CYGWIN*) cygwin=true ;;
+ Darwin*) darwin=true
+ if [ -z "$JAVA_HOME" ] ; then
+ JAVA_HOME=/System/Library/Frameworks/JavaVM.framework/Home
+ fi
+ ;;
+esac
+
+if [ -z "$DERBY_HOME" -o ! -d "$DERBY_HOME" ] ; then
+ ## resolve links - $0 may be a link to derby's home
+ PRG="$0"
+ progname=`basename "$0"`
+
+ # need this for relative symlinks
+ while [ -h "$PRG" ] ; do
+ ls=`ls -ld "$PRG"`
+ link=`expr "$ls" : '.*-> \(.*\)$'`
+ if expr "$link" : '/.*' > /dev/null; then
+ PRG="$link"
+ else
+ PRG=`dirname "$PRG"`"/$link"
+ fi
+ done
+
+ DERBY_HOME=`dirname "$PRG"`/..
+
+ # make it fully qualified
+ DERBY_HOME=`cd "$DERBY_HOME" && pwd`
+fi
+
+# For Cygwin, ensure paths are in UNIX format before anything is touched
+if $cygwin ; then
+ [ -n "$DERBY_HOME" ] &&
+ DERBY_HOME=`cygpath --unix "$DERBY_HOME"`
+ [ -n "$JAVA_HOME" ] &&
+ JAVA_HOME=`cygpath --unix "$JAVA_HOME"`
+fi
+
+# set DERBY_LIB location
+DERBY_LIB="${DERBY_HOME}/lib"
+
+if [ -z "$JAVACMD" ] ; then
+ if [ -n "$JAVA_HOME" ] ; then
+ if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
+ # IBM's JDK on AIX uses strange locations for the executables
+ JAVACMD="$JAVA_HOME/jre/sh/java"
+ else
+ JAVACMD="$JAVA_HOME/bin/java"
+ fi
+ else
+ JAVACMD=`which java 2> /dev/null `
+ if [ -z "$JAVACMD" ] ; then
+ JAVACMD=java
+ fi
+ fi
+fi
+
+if [ ! -x "$JAVACMD" ] ; then
+ echo "Error: JAVA_HOME is not defined correctly."
+ echo " We cannot execute $JAVACMD"
+ exit 1
+fi
+
+# set local classpath, don't overwrite the user's
+LOCALCLASSPATH=$DERBY_LIB/derby.jar:$DERBY_LIB/derbynet.jar:$DERBY_LIB/derbytools.jar:$DERBY_LIB/derbyclient.jar
+
+# if CLASSPATH_OVERRIDE env var is set, LOCALCLASSPATH will be
+# user CLASSPATH first and derby-found jars after.
+# In that case, the user CLASSPATH will override derby-found jars
+#
+# if CLASSPATH_OVERRIDE is not set, we'll have the normal behaviour
+# with derby-found jars first and user CLASSPATH after
+if [ -n "$CLASSPATH" ] ; then
+ # merge local and specified classpath
+ if [ -z "$LOCALCLASSPATH" ] ; then
+ LOCALCLASSPATH="$CLASSPATH"
+ elif [ -n "$CLASSPATH_OVERRIDE" ] ; then
+ LOCALCLASSPATH="$CLASSPATH:$LOCALCLASSPATH"
+ else
+ LOCALCLASSPATH="$LOCALCLASSPATH:$CLASSPATH"
+ fi
+
+ # remove class path from launcher -cp option
+ CLASSPATH=""
+fi
+
+# For Cygwin, switch paths to appropriate format before running java
+# For PATHs convert to unix format first, then to windows format to ensure
+# both formats are supported. Probably this will fail on directories with ;
+# in the name in the path. Let's assume that paths containing ; are more
+# rare than windows style paths on cygwin.
+if $cygwin; then
+ if [ "$OS" = "Windows_NT" ] && cygpath -m .>/dev/null 2>/dev/null ; then
+ format=mixed
+ else
+ format=windows
+ fi
+ DERBY_HOME=`cygpath --$format "$DERBY_HOME"`
+ DERBY_LIB=`cygpath --$format "$DERBY_LIB"`
+ if [ -n "$JAVA_HOME" ]; then
+ JAVA_HOME=`cygpath --$format "$JAVA_HOME"`
+ fi
+ LCP_TEMP=`cygpath --path --unix "$LOCALCLASSPATH"`
+ LOCALCLASSPATH=`cygpath --path --$format "$LCP_TEMP"`
+ if [ -n "$CLASSPATH" ] ; then
+ CP_TEMP=`cygpath --path --unix "$CLASSPATH"`
+ CLASSPATH=`cygpath --path --$format "$CP_TEMP"`
+ fi
+ CYGHOME=`cygpath --$format "$HOME"`
+fi
+
+# add a second backslash to variables terminated by a backslash under cygwin
+if $cygwin; then
+ case "$DERBY_HOME" in
+ *\\ )
+ DERBY_HOME="$DERBY_HOME\\"
+ ;;
+ esac
+ case "$CYGHOME" in
+ *\\ )
+ CYGHOME="$CYGHOME\\"
+ ;;
+ esac
+ case "$LOCALCLASSPATH" in
+ *\\ )
+ LOCALCLASSPATH="$LOCALCLASSPATH\\"
+ ;;
+ esac
+ case "$CLASSPATH" in
+ *\\ )
+ CLASSPATH="$CLASSPATH\\"
+ ;;
+ esac
+fi
+
+# Readjust classpath for MKS
+# expr match
+if [ \( "`expr $SHELL : '.*sh.exe$'`" -gt 0 \) -a \( "$cygwin" = "false" \) ]; then
+ LOCALCLASSPATH=`echo $LOCALCLASSPATH | sed -E 's/([\d\w]*):([\d\w]*)/\1;\2/g
+'`
+fi
+#!/bin/sh
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+
+# http://www.apache.org/licenses/LICENSE-2.0
+
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+derby_exec_command="exec \"$JAVACMD\" $DERBY_OPTS -classpath \"$LOCALCLASSPATH\" org.apache.derby.drda.NetworkServerControl start $@"
+eval $derby_exec_command
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/bin/workflow-server.sh
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/bin/workflow-server.sh b/distribution/src/main/resources/bin/workflow-server.sh
new file mode 100755
index 0000000..b66e192
--- /dev/null
+++ b/distribution/src/main/resources/bin/workflow-server.sh
@@ -0,0 +1,118 @@
+#!/bin/bash
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+. `dirname $0`/setenv.sh
+cd $AIRAVATA_HOME/bin
+LOGO_FILE="logo.txt"
+
+JAVA_OPTS=""
+AIRAVATA_COMMAND=""
+IS_DAEMON_MODE=false
+LOGO=true
+STOP=false
+FORCE=false
+SERVERS="--servers=workflowserver"
+for var in "$@"
+do
+ case $var in
+ -xdebug)
+ JAVA_OPTS="$JAVA_OPTS -Xdebug -Xnoagent -Xrunjdwp:transport=dt_socket,server=y,address=8000"
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
+ shift
+ ;;
+ -security)
+ JAVA_OPTS="$JAVA_OPTS -Djava.security.manager -Djava.security.policy=$AIRAVATA_HOME/conf/axis2.policy -Daxis2.home=$AIRAVATA_HOME"
+ shift
+ ;;
+ start)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS"
+ IS_DAEMON_MODE=true
+ shift
+ ;;
+ stop)
+ LOGO=false
+ STOP=true
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $var"
+ shift
+ ;;
+ --force)
+ FORCE=true
+ shift
+ ;;
+ -nologo)
+ LOGO=false
+ shift
+ ;;
+ -h)
+ echo "Usage: airavata-server.sh [command-options]"
+ echo "command options:"
+ echo " start Start server in daemon mode"
+ echo " stop [--force] Stop all airavata servers."
+ echo " --<key>[=<value>] Server setting(s) to override or introduce (overrides values in airavata-server.properties)"
+ echo " -nologo Do not show airavata logo"
+ echo " -xdebug Start Airavata Server under JPDA debugger"
+ echo " -security Enable Java 2 security"
+ echo " -h Display this help and exit"
+ shift
+ exit 0
+ ;;
+ *)
+ AIRAVATA_COMMAND="$AIRAVATA_COMMAND $SERVERS $var"
+ shift
+ esac
+done
+if $LOGO ; then
+ if [ -e $LOGO_FILE ]
+ then
+ cat $LOGO_FILE
+ fi
+fi
+if $STOP && $FORCE ;
+then
+ for f in `find . -name "server-start_*"`; do
+ f_split=(${f//_/ });
+ echo "Found process file : $f"
+ echo -n " Sending kill signals to process ${f_split[1]}..."
+ out=`kill -9 ${f_split[1]} 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ echo -n " Removing process file..."
+ out=`rm $f 2>&1`
+ if [ -z "$out" ]; then
+ echo "done"
+ else
+ echo "failed (REASON: $out)"
+ fi
+ done
+else
+ if $IS_DAEMON_MODE ; then
+ echo "Starting airavata server in daemon mode..."
+ nohup java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $* > workflow-server.out &
+ else
+ java $JAVA_OPTS -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.server.ServerMain $AIRAVATA_COMMAND $*
+ fi
+fi
+
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/samples/registerSample.sh
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/samples/registerSample.sh b/distribution/src/main/resources/samples/registerSample.sh
new file mode 100644
index 0000000..6450f6f
--- /dev/null
+++ b/distribution/src/main/resources/samples/registerSample.sh
@@ -0,0 +1,25 @@
+#!/bin/sh
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+. `dirname $0`/../bin/setenv.sh
+JAVA_OPTS=""
+
+java -classpath "$XBAYA_CLASSPATH" \
+ -Djava.endorsed.dirs="$AIRAVATA_HOME/lib/endorsed":"$JAVA_HOME/jre/lib/endorsed":"$JAVA_HOME/lib/endorsed" \
+ org.apache.airavata.client.samples.RegisterSampleData $*
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/samples/scripts/add.sh
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/samples/scripts/add.sh b/distribution/src/main/resources/samples/scripts/add.sh
new file mode 100755
index 0000000..daa140b
--- /dev/null
+++ b/distribution/src/main/resources/samples/scripts/add.sh
@@ -0,0 +1,21 @@
+#!/bin/sh
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+# add two numbers
+sleep 10
+/bin/echo "Result=`expr $1 + $2`"
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/samples/scripts/echo.sh
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/samples/scripts/echo.sh b/distribution/src/main/resources/samples/scripts/echo.sh
new file mode 100755
index 0000000..9dbaab9
--- /dev/null
+++ b/distribution/src/main/resources/samples/scripts/echo.sh
@@ -0,0 +1,22 @@
+#!/bin/sh
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+#echo wrapper
+sleep 10
+/bin/echo "Echoed_Output=$1"
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/samples/scripts/multiply.sh
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/samples/scripts/multiply.sh b/distribution/src/main/resources/samples/scripts/multiply.sh
new file mode 100755
index 0000000..a5b5f7f
--- /dev/null
+++ b/distribution/src/main/resources/samples/scripts/multiply.sh
@@ -0,0 +1,22 @@
+#!/bin/sh
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+# mutiply two numbers
+sleep 10
+/bin/echo "Result=`expr $1 \* $2`"
http://git-wip-us.apache.org/repos/asf/airavata/blob/6eaaff4f/distribution/src/main/resources/samples/scripts/subtract.sh
----------------------------------------------------------------------
diff --git a/distribution/src/main/resources/samples/scripts/subtract.sh b/distribution/src/main/resources/samples/scripts/subtract.sh
new file mode 100755
index 0000000..a21bec7
--- /dev/null
+++ b/distribution/src/main/resources/samples/scripts/subtract.sh
@@ -0,0 +1,22 @@
+#!/bin/sh
+
+# Licensed to the Apache Software Foundation (ASF) under one
+# or more contributor license agreements. See the NOTICE file
+# distributed with this work for additional information
+# regarding copyright ownership. The ASF licenses this file
+# to you under the Apache License, Version 2.0 (the
+# "License"); you may not use this file except in compliance
+# with the License. You may obtain a copy of the License at
+#
+# http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing,
+# software distributed under the License is distributed on an
+# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+# KIND, either express or implied. See the License for the
+# specific language governing permissions and limitations
+# under the License.
+
+# substract two numbers
+sleep 10
+/bin/echo "Result=`expr $1 - $2`"