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Posted to commits@taverna.apache.org by st...@apache.org on 2016/05/02 18:33:42 UTC
[03/28] incubator-taverna-common-activities git commit: Moved
third-party test WSDLs to
https://github.com/taverna-extras/wsdl-generic-test-cases
http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/b29c0312/taverna-wsdl-generic/src/test/resources/testwsdls/prodoric.wsdl
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/resources/testwsdls/prodoric.wsdl b/taverna-wsdl-generic/src/test/resources/testwsdls/prodoric.wsdl
deleted file mode 100644
index bd1ce36..0000000
--- a/taverna-wsdl-generic/src/test/resources/testwsdls/prodoric.wsdl
+++ /dev/null
@@ -1,360 +0,0 @@
-<?xml version ='1.0' encoding ='UTF-8' ?>
-<definitions name='prodoric_ws'
- targetNamespace='ws.prodoric'
- xmlns:tns='ws.prodoric'
- xmlns:soap='http://schemas.xmlsoap.org/wsdl/soap/'
- xmlns:xsd='http://www.w3.org/2001/XMLSchema'
- xmlns:soapenc='http://schemas.xmlsoap.org/soap/encoding/'
- xmlns:wsdl='http://schemas.xmlsoap.org/wsdl/'
- xmlns='http://schemas.xmlsoap.org/wsdl/'>
-
-<wsdl:types>
-<xsd:schema xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:apachesoap="http://xml.apache.org/xml-soap"
-xmlns:wsdl="http://schemas.xmlsoap.org/wsdl/"
-targetNamespace="ws.prodoric">
-
-<xsd:element name="ProteinAccString" type="xsd:string"/>
-<xsd:element name="HelloStringIn" type="xsd:string"/>
-<xsd:element name="HelloStringOut" type="xsd:string"/>
-<xsd:element name="ProfileAcc" type="xsd:string"/>
-
-<xsd:element name="OperonParams" type="tns:ParamsType"/>
-<xsd:element name="RegulatorParams" type="tns:ParamsType"/>
-<xsd:element name="ProfileParameterParams" type="tns:ParamsType"/>
-<xsd:element name="ExpressionFromGeneParams" type="tns:ParamsType"/>
-<xsd:element name="GenomeParams" type="tns:ParamsType"/>
- <xsd:complexType name="ParamsType">
-
- <xsd:sequence>
- <xsd:element name="idtype" type="xsd:string"/>
- <xsd:element name="id" type="xsd:string"/>
- </xsd:sequence>
- </xsd:complexType>
-
-<xsd:element name="UniprotAccArray" type="tns:StringArrayType"/>
-<xsd:complexType name="StringArrayType">
- <xsd:sequence>
- <xsd:element name="str" type="xsd:string" minOccurs="0" maxOccurs="unbounded"/>
-
- </xsd:sequence>
-</xsd:complexType>
-
-<xsd:element name="ArrayOfOperonResult" type="tns:OperonResultArrayType"/>
-<xsd:complexType name="OperonResultArrayType">
- <xsd:sequence>
- <xsd:element name="OperonResult" type="tns:OperonResultType" minOccurs="0" maxOccurs="unbounded"/>
- </xsd:sequence>
-</xsd:complexType>
-<xsd:complexType name="OperonResultType">
- <xsd:sequence>
- <xsd:element name="gene_acc" type="xsd:string"/>
-
- <xsd:element name="short_name" type="xsd:string"/>
- <xsd:element name="gene_name" type="xsd:string"/>
- <xsd:element name="orf_id" type="xsd:string"/>
- <xsd:element name="operon_acc" type="xsd:string"/>
- <xsd:element name="operon_name" type="xsd:string"/>
- <xsd:element name="references" type="xsd:string"/>
- </xsd:sequence>
-</xsd:complexType>
-
-<xsd:element name="ArrayOfRegulatorResult" type="tns:RegulatorResultArrayType"/>
-
-<xsd:complexType name="RegulatorResultArrayType">
- <xsd:sequence>
- <xsd:element name="RegulatorResult" type="tns:RegulatorResultType" minOccurs="0" maxOccurs="unbounded"/>
- </xsd:sequence>
-</xsd:complexType>
-<xsd:complexType name="RegulatorResultType">
- <xsd:sequence>
- <xsd:element name="protein_acc" type="xsd:string"/>
- <xsd:element name="short_name" type="xsd:string"/>
- <xsd:element name="protein_name" type="xsd:string"/>
-
- <xsd:element name="orf_id" type="xsd:string"/>
- <xsd:element name="mode_of_action" type="xsd:string"/>
- <xsd:element name="promoter_acc" type="xsd:string"/>
- <xsd:element name="promoter_name" type="xsd:string"/>
- <xsd:element name="site_acc" type="xsd:string"/>
- <xsd:element name="site_name" type="xsd:string"/>
- <xsd:element name="sequence" type="xsd:string"/>
- <xsd:element name="references" type="xsd:string"/>
- </xsd:sequence>
-
-</xsd:complexType>
-
-<xsd:element name="ArrayOfProfileParameterResult" type="tns:ProfileParameterResultArrayType"/>
-<xsd:complexType name="ProfileParameterResultArrayType">
- <xsd:sequence>
- <xsd:element name="ProfileParameterResult" type="tns:ProfileParameterResultType" minOccurs="0" maxOccurs="unbounded"/>
- </xsd:sequence>
-</xsd:complexType>
-<xsd:complexType name="ProfileParameterResultType">
- <xsd:sequence>
- <xsd:element name="profile_acc" type="xsd:string"/>
- <xsd:element name="description" type="xsd:string"/>
-
- <xsd:element name="condition" type="xsd:string"/>
- <xsd:element name="details" type="xsd:string"/>
- <xsd:element name="genome_acc" type="xsd:string"/>
- <xsd:element name="genome" type="xsd:string"/>
- <xsd:element name="references" type="xsd:string"/>
- </xsd:sequence>
-</xsd:complexType>
-
-<xsd:element name="ArrayOfProfileResult" type="tns:ProfileResultArrayType"/>
-<xsd:complexType name="ProfileResultArrayType">
- <xsd:sequence>
-
- <xsd:element name="ProfileResult" type="tns:ProfileResultType" minOccurs="0" maxOccurs="unbounded"/>
- </xsd:sequence>
-</xsd:complexType>
-<xsd:complexType name="ProfileResultType">
- <xsd:sequence>
- <xsd:element name="gene_acc" type="xsd:string"/>
- <xsd:element name="orf_id" type="xsd:string"/>
- <xsd:element name="short_name" type="xsd:string"/>
- <xsd:element name="gene_name" type="xsd:string"/>
- <xsd:element name="regulation" type="xsd:string"/>
-
- <xsd:element name="fold_change" type="xsd:string"/>
- </xsd:sequence>
-</xsd:complexType>
-
-<xsd:element name="ArrayOfExpressionFromGene" type="tns:ExpressionFromGeneArrayType"/>
-<xsd:complexType name="ExpressionFromGeneArrayType">
- <xsd:sequence>
- <xsd:element name="ExpressionFromGene" type="tns:ExpressionFromGeneType" minOccurs="0" maxOccurs="unbounded"/>
- </xsd:sequence>
-</xsd:complexType>
-<xsd:complexType name="ExpressionFromGeneType">
- <xsd:sequence>
-
- <xsd:element name="profile_acc" type="xsd:string"/>
- <xsd:element name="description" type="xsd:string"/>
- <xsd:element name="condition" type="xsd:string"/>
- <xsd:element name="regulation" type="xsd:string"/>
- <xsd:element name="fold_change" type="xsd:string"/>
- <xsd:element name="references" type="xsd:string"/>
- </xsd:sequence>
-</xsd:complexType>
-
-<xsd:element name="ArrayOfGenomeResult" type="tns:GenomeResultArrayType"/>
-
-<xsd:complexType name="GenomeResultArrayType">
- <xsd:sequence>
- <xsd:element name="GenomeResult" type="tns:GenomeResultType" minOccurs="0" maxOccurs="unbounded"/>
- </xsd:sequence>
-</xsd:complexType>
-<xsd:complexType name="GenomeResultType">
- <xsd:sequence>
- <xsd:element name="genome_acc" type="xsd:string"/>
- <xsd:element name="genome_name" type="xsd:string"/>
- </xsd:sequence>
-
-</xsd:complexType>
-
-</xsd:schema>
-
-</wsdl:types>
-
-<message name='getOperonRequest'>
- <part name='params' element='tns:OperonParams'/>
-</message>
-<message name='getOperonResponse'>
- <part name='return' element='tns:ArrayOfOperonResult'/>
-</message>
-
-<message name='getRegulatorsFromGeneRequest'>
- <part name='params' element='tns:RegulatorParams'/>
-</message>
-
-<message name='getRegulatorsFromGeneResponse'>
- <part name='return' element='tns:ArrayOfRegulatorResult'/>
-</message>
-
-<message name='getProfileParameterRequest'>
- <part name='params' element='tns:ProfileParameterParams'/>
-</message>
-<message name='getProfileParameterResponse'>
- <part name='return' element='tns:ArrayOfProfileParameterResult'/>
-</message>
-
-<message name='getProfileRequest'>
- <part name='params' element='tns:ProfileAcc'/>
-</message>
-<message name='getProfileResponse'>
- <part name='return' element='tns:ArrayOfProfileResult'/>
-
-</message>
-
-<message name='getExpressionFromGeneRequest'>
- <part name='params' element='tns:ExpressionFromGeneParams'/>
-</message>
-<message name='getExpressionFromGeneResponse'>
- <part name='return' element='tns:ArrayOfExpressionFromGene'/>
-</message>
-
-<message name='getGenomeRequest'>
- <part name='params' element='tns:GenomeParams'/>
-</message>
-<message name='getGenomeResponse'>
- <part name='return' element='tns:ArrayOfGenomeResult'/>
-
-</message>
-
-<message name='getUniProtAccRequest'>
- <part name='protein_acc' element='tns:ProteinAccString'/>
-</message>
-<message name='getUniProtAccResponse'>
- <part name='uniprot_acc' element='tns:UniprotAccArray'/>
-</message>
-
-<message name='helloRequest'>
- <part name='input' element='tns:HelloStringIn'/>
-</message>
-<message name='helloResponse'>
- <part name='return' element='tns:HelloStringOut'/>
-</message>
-
-
-<portType name='prodoricPortType'>
-
- <operation name='getOperon'>
- <input message='tns:getOperonRequest'/>
- <output message='tns:getOperonResponse'/>
- </operation>
-
- <operation name='getRegulatorsFromGene'>
- <input message='tns:getRegulatorsFromGeneRequest'/>
- <output message='tns:getRegulatorsFromGeneResponse'/>
- </operation>
-
- <operation name='getProfileParameter'>
- <input message='tns:getProfileParameterRequest'/>
- <output message='tns:getProfileParameterResponse'/>
- </operation>
-
- <operation name='getProfile'>
- <input message='tns:getProfileRequest'/>
- <output message='tns:getProfileResponse'/>
- </operation>
-
- <operation name='getExpressionFromGene'>
- <input message='tns:getExpressionFromGeneRequest'/>
- <output message='tns:getExpressionFromGeneResponse'/>
- </operation>
-
- <operation name='getGenome'>
- <input message='tns:getGenomeRequest'/>
- <output message='tns:getGenomeResponse'/>
- </operation>
-
- <operation name='getUniProtAcc'>
- <input message='tns:getUniProtAccRequest'/>
- <output message='tns:getUniProtAccResponse'/>
- </operation>
-
- <operation name='hello'>
- <input message='tns:helloRequest'/>
- <output message='tns:helloResponse'/>
- </operation>
-
-</portType>
-
-
-<binding name='prodoricBinding' type='tns:prodoricPortType'>
- <soap:binding style='document' transport='http://schemas.xmlsoap.org/soap/http'/>
-
- <operation name='getOperon'>
- <soap:operation soapAction='ws.prodoric#getOperon'/>
- <input>
- <soap:body use='literal' namespace='ws.prodoric' />
- </input>
- <output>
- <soap:body use='literal' namespace='ws.prodoric' />
- </output>
- </operation>
-
- <operation name='getRegulatorsFromGene'>
- <soap:operation soapAction='ws.prodoric#getRegulatorsFromGene'/>
- <input>
- <soap:body use='literal' namespace='ws.prodoric' />
- </input>
- <output>
- <soap:body use='literal' namespace='ws.prodoric' />
- </output>
- </operation>
-
- <operation name='getProfileParameter'>
- <soap:operation soapAction='ws.prodoric#getProfileParameter'/>
- <input>
- <soap:body use='literal' namespace='ws.prodoric' />
- </input>
- <output>
- <soap:body use='literal' namespace='ws.prodoric' />
- </output>
- </operation>
-
- <operation name='getProfile'>
- <soap:operation soapAction='ws.prodoric#getProfile'/>
- <input>
- <soap:body use='literal' namespace='ws.prodoric' />
- </input>
- <output>
- <soap:body use='literal' namespace='ws.prodoric' />
- </output>
- </operation>
-
-
- <operation name='getExpressionFromGene'>
- <soap:operation soapAction='ws.prodoric#getExpressionFromGene'/>
- <input>
- <soap:body use='literal' namespace='ws.prodoric' />
- </input>
- <output>
- <soap:body use='literal' namespace='ws.prodoric' />
- </output>
- </operation>
-
-
- <operation name='getGenome'>
- <soap:operation soapAction='ws.prodoric#getGenome'/>
- <input>
- <soap:body use='literal' namespace='ws.prodoric' />
- </input>
- <output>
- <soap:body use='literal' namespace='ws.prodoric' />
- </output>
- </operation>
-
- <operation name='getUniProtAcc'>
- <soap:operation soapAction='ws.prodoric#getUniProtAcc'/>
- <input>
- <soap:body use='literal' namespace='ws.prodoric' />
- </input>
- <output>
- <soap:body use='literal' namespace='ws.prodoric' />
- </output>
- </operation>
-
- <operation name='hello'>
- <soap:operation soapAction='ws.prodoric#hello'/>
- <input>
- <soap:body use='literal' namespace='ws.prodoric' />
- </input>
- <output>
- <soap:body use='literal' namespace='ws.prodoric' />
- </output>
- </operation>
-
-</binding>
-
-
-<service name='prodoric_webservice'>
- <port name='prodoricPort' binding='tns:prodoricBinding'>
- <soap:address location='http://134.169.104.13/webservice/prodoric_server.php'/>
- </port>
-
-</service>
-</definitions>
http://git-wip-us.apache.org/repos/asf/incubator-taverna-common-activities/blob/b29c0312/taverna-wsdl-generic/src/test/resources/testwsdls/whatizit.wsdl
----------------------------------------------------------------------
diff --git a/taverna-wsdl-generic/src/test/resources/testwsdls/whatizit.wsdl b/taverna-wsdl-generic/src/test/resources/testwsdls/whatizit.wsdl
deleted file mode 100644
index b3016fa..0000000
--- a/taverna-wsdl-generic/src/test/resources/testwsdls/whatizit.wsdl
+++ /dev/null
@@ -1,233 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<definitions xmlns:tns="http://www.ebi.ac.uk/webservices/whatizit/ws" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/" xmlns:mime="http://schemas.xmlsoap.org/wsdl/mime/" xmlns="http://schemas.xmlsoap.org/wsdl/" targetNamespace="http://www.ebi.ac.uk/webservices/whatizit/ws" name="whatizit">
-
- <types>
- <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" targetNamespace="http://www.ebi.ac.uk/webservices/whatizit/ws" version="1.0">
-
- <xs:element xmlns:ns1="http://www.ebi.ac.uk/webservices/whatizit/ws" type="ns1:search" name="search"/>
- <xs:complexType name="search">
- <xs:sequence>
- <xs:element type="xs:string" minOccurs="0" name="pipelineName"/>
- <xs:element type="xs:string" minOccurs="0" name="query"/>
-
- <xs:element name="limit">
- <xs:simpleType>
- <xs:restriction base="xs:int">
- <xs:minInclusive value="0"/>
- <xs:maxExclusive value="10000"/>
- </xs:restriction>
- </xs:simpleType>
- </xs:element>
- </xs:sequence>
- </xs:complexType>
-
- <xs:element xmlns:ns2="http://www.ebi.ac.uk/webservices/whatizit/ws" type="ns2:searchResponse" name="searchResponse"/>
- <xs:complexType name="searchResponse">
- <xs:sequence>
- <xs:element type="xs:string" minOccurs="0" name="return"/>
- </xs:sequence>
- </xs:complexType>
-
- <xs:element xmlns:ns3="http://www.ebi.ac.uk/webservices/whatizit/ws" type="ns3:WhatizitException" name="WhatizitException"/>
- <xs:complexType name="WhatizitException">
-
- <xs:sequence>
- <xs:element type="xs:string" minOccurs="0" name="message"/>
- </xs:sequence>
- </xs:complexType>
-
- <xs:element xmlns:ns4="http://www.ebi.ac.uk/webservices/whatizit/ws" type="ns4:contact" name="contact"/>
- <xs:complexType name="contact">
- <xs:sequence>
- <xs:element type="xs:string" minOccurs="0" name="pipelineName"/>
-
- <xs:element type="xs:string" minOccurs="0" name="text"/>
- <xs:element type="xs:boolean" name="convertToHtml"/>
- </xs:sequence>
- </xs:complexType>
-
- <xs:element xmlns:ns5="http://www.ebi.ac.uk/webservices/whatizit/ws" type="ns5:contactResponse" name="contactResponse"/>
- <xs:complexType name="contactResponse">
- <xs:sequence>
- <xs:element type="xs:string" minOccurs="0" name="return"/>
-
- </xs:sequence>
- </xs:complexType>
-
- <xs:element xmlns:ns6="http://www.ebi.ac.uk/webservices/whatizit/ws" type="ns6:queryPmid" name="queryPmid"/>
- <xs:complexType name="queryPmid">
- <xs:sequence>
- <xs:element type="xs:string" minOccurs="0" name="pipelineName"/>
- <xs:element type="xs:string" minOccurs="0" name="pmid"/>
- </xs:sequence>
-
- </xs:complexType>
-
- <xs:element xmlns:ns7="http://www.ebi.ac.uk/webservices/whatizit/ws" type="ns7:queryPmidResponse" name="queryPmidResponse"/>
- <xs:complexType name="queryPmidResponse">
- <xs:sequence>
- <xs:element type="xs:string" minOccurs="0" name="return"/>
- </xs:sequence>
- </xs:complexType>
-
- <xs:element xmlns:ns8="http://www.ebi.ac.uk/webservices/whatizit/ws" type="ns8:getPipelinesStatus" name="getPipelinesStatus"/>
-
- <xs:complexType name="getPipelinesStatus"/>
-
- <xs:element xmlns:ns9="http://www.ebi.ac.uk/webservices/whatizit/ws" type="ns9:getPipelinesStatusResponse" name="getPipelinesStatusResponse"/>
- <xs:complexType name="getPipelinesStatusResponse">
- <xs:sequence>
- <xs:element xmlns:ns10="http://www.ebi.ac.uk/webservices/whatizit/ws" type="ns10:selectItem" minOccurs="0" name="return" maxOccurs="unbounded"/>
- </xs:sequence>
- </xs:complexType>
-
- <xs:complexType name="selectItem">
-
- <xs:sequence>
- <xs:element type="xs:string" minOccurs="0" name="description"/>
- <xs:element type="xs:boolean" name="disabled"/>
- <xs:element type="xs:string" minOccurs="0" name="label"/>
- <xs:element type="xs:anyType" minOccurs="0" name="value"/>
- </xs:sequence>
- </xs:complexType>
- </xs:schema>
- </types>
-
-
-
- <message name="contact">
- <part element="tns:contact" name="parameters"/>
- </message>
-
- <message name="contactResponse">
- <part element="tns:contactResponse" name="parameters"/>
- </message>
-
- <message name="WhatizitException">
- <part element="tns:WhatizitException" name="fault"/>
-
- </message>
-
- <message name="getPipelinesStatus">
- <part element="tns:getPipelinesStatus" name="parameters"/>
- </message>
-
- <message name="getPipelinesStatusResponse">
- <part element="tns:getPipelinesStatusResponse" name="parameters"/>
- </message>
-
- <message name="queryPmid">
- <part element="tns:queryPmid" name="parameters"/>
-
- </message>
-
- <message name="queryPmidResponse">
- <part element="tns:queryPmidResponse" name="parameters"/>
- </message>
-
- <message name="search">
- <part element="tns:search" name="parameters"/>
- </message>
-
- <message name="searchResponse">
- <part element="tns:searchResponse" name="parameters"/>
-
- </message>
-
-
- <portType name="whatizit">
- <operation name="contact">
- <input message="tns:contact"/>
- <output message="tns:contactResponse"/>
- <fault message="tns:WhatizitException" name="WhatizitException"/>
- </operation>
- <operation name="getPipelinesStatus">
- <input message="tns:getPipelinesStatus"/>
-
- <output message="tns:getPipelinesStatusResponse"/>
- <fault message="tns:WhatizitException" name="WhatizitException"/>
- </operation>
- <operation name="queryPmid">
- <input message="tns:queryPmid"/>
- <output message="tns:queryPmidResponse"/>
- <fault message="tns:WhatizitException" name="WhatizitException"/>
- </operation>
- <operation name="search">
-
- <input message="tns:search"/>
- <output message="tns:searchResponse"/>
- <fault message="tns:WhatizitException" name="WhatizitException"/>
- </operation>
- </portType>
-
- <binding type="tns:whatizit" name="pipelineBinding">
- <soap:binding style="document" transport="http://schemas.xmlsoap.org/soap/http"/>
- <operation name="contact">
- <soap:operation soapAction=""/>
-
- <input>
- <soap:body use="literal"/>
- </input>
- <output>
- <soap:body use="literal"/>
- </output>
- <fault name="WhatizitException">
- <soap:fault use="literal" name="WhatizitException"/>
- </fault>
-
- </operation>
- <operation name="getPipelinesStatus">
- <soap:operation soapAction=""/>
- <input>
- <soap:body use="literal"/>
- </input>
- <output>
- <soap:body use="literal"/>
- </output>
-
- <fault name="WhatizitException">
- <soap:fault use="literal" name="WhatizitException"/>
- </fault>
- </operation>
- <operation name="queryPmid">
- <soap:operation soapAction=""/>
- <input>
- <soap:body use="literal"/>
- </input>
-
- <output>
- <soap:body use="literal"/>
- </output>
- <fault name="WhatizitException">
- <soap:fault use="literal" name="WhatizitException"/>
- </fault>
- </operation>
- <operation name="search">
- <soap:operation soapAction=""/>
-
- <input>
- <soap:body use="literal"/>
- </input>
- <output>
- <mime:multipartRelated>
- <mime:part>
- <soap:body parts="" use="literal"/>
- </mime:part>
- <mime:part>
-
- <mime:content type="text/xml" part="parameters"/>
- </mime:part>
- </mime:multipartRelated>
- </output>
- <fault name="WhatizitException">
- <soap:fault use="literal" name="WhatizitException"/>
- </fault>
- </operation>
- </binding>
-
- <service name="whatizit">
- <port binding="tns:pipelineBinding" name="pipeline">
- <soap:address location="http://www.ebi.ac.uk:80/webservices/whatizit/ws"/>
- </port>
- </service>
-</definitions>
\ No newline at end of file