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Posted to issues@arrow.apache.org by "Wes McKinney (JIRA)" <ji...@apache.org> on 2018/03/09 15:30:01 UTC
[jira] [Updated] (ARROW-2269) [Python] Cannot build bdist_wheel for
Python
[ https://issues.apache.org/jira/browse/ARROW-2269?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Wes McKinney updated ARROW-2269:
--------------------------------
Summary: [Python] Cannot build bdist_wheel for Python (was: Cannot build bdist_wheel for Python)
> [Python] Cannot build bdist_wheel for Python
> --------------------------------------------
>
> Key: ARROW-2269
> URL: https://issues.apache.org/jira/browse/ARROW-2269
> Project: Apache Arrow
> Issue Type: Bug
> Components: Packaging
> Affects Versions: 0.9.0
> Reporter: Mitar
> Assignee: Uwe L. Korn
> Priority: Major
> Labels: pull-request-available
> Fix For: 0.9.0
>
>
> I am trying current master.
> I ran:
> {{{{
> python setup.py build_ext --build-type=$ARROW_BUILD_TYPE --with-parquet --with-plasma --bundle-arrow-cpp bdist_wheel
> }}}}
> Output:
> {{{{
> running build_ext
> creating build
> creating build/temp.linux-x86_64-3.6
> -- Runnning cmake for pyarrow
> cmake -DPYTHON_EXECUTABLE=.../Temp/arrow/pyarrow/bin/python -DPYARROW_BUILD_PARQUET=on -DPYARROW_BOOST_USE_SHARED=on -DPYARROW_BUILD_PLASMA=on -DPYARROW_BUNDLE_ARROW_CPP=ON -DCMAKE_BUILD_TYPE=release .../Temp/arrow/arrow/python
> -- The C compiler identification is GNU 7.2.0
> -- The CXX compiler identification is GNU 7.2.0
> -- Check for working C compiler: /usr/bin/cc
> -- Check for working C compiler: /usr/bin/cc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> INFOCompiler command: /usr/bin/c++
> INFOCompiler version: Using built-in specs.
> COLLECT_GCC=/usr/bin/c++
> COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper
> OFFLOAD_TARGET_NAMES=nvptx-none
> OFFLOAD_TARGET_DEFAULT=1
> Target: x86_64-linux-gnu
> Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.2.0-8ubuntu3.2' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
> Thread model: posix
> gcc version 7.2.0 (Ubuntu 7.2.0-8ubuntu3.2)
> INFOCompiler id: GNU
> Selected compiler gcc 7.2.0
> -- Performing Test CXX_SUPPORTS_SSE3
> -- Performing Test CXX_SUPPORTS_SSE3 - Success
> -- Performing Test CXX_SUPPORTS_ALTIVEC
> -- Performing Test CXX_SUPPORTS_ALTIVEC - Failed
> Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE={release,debug,...})
> -- Build Type: RELEASE
> -- Build output directory: .../Temp/arrow/arrow/python/build/temp.linux-x86_64-3.6/release/
> -- Found PythonInterp: .../Temp/arrow/pyarrow/bin/python (found version "3.6.3")
> -- Searching for Python libs in .../Temp/arrow/pyarrow/lib64;.../Temp/arrow/pyarrow/lib;/usr/lib/python3.6/config-3.6m-x86_64-linux-gnu
> -- Looking for python3.6m
> -- Found Python lib /usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so
> -- Found PythonLibs: /usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so
> -- Found NumPy: version "1.14.1" .../Temp/arrow/pyarrow/lib/python3.6/site-packages/numpy/core/include
> -- Searching for Python libs in .../Temp/arrow/pyarrow/lib64;.../Temp/arrow/pyarrow/lib;/usr/lib/python3.6/config-3.6m-x86_64-linux-gnu
> -- Looking for python3.6m
> -- Found Python lib /usr/lib/python3.6/config-3.6m-x86_64-linux-gnu/libpython3.6m.so
> -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
> -- Checking for module 'arrow'
> -- Found arrow, version 0.9.0-SNAPSHOT
> -- Arrow ABI version: 0.0.0
> -- Arrow SO version: 0
> -- Found the Arrow core library: .../Temp/arrow/dist/lib/libarrow.so
> -- Found the Arrow Python library: .../Temp/arrow/dist/lib/libarrow_python.so
> -- Boost version: 1.63.0
> -- Found the following Boost libraries:
> -- system
> -- filesystem
> -- regex
> Added shared library dependency arrow: .../Temp/arrow/dist/lib/libarrow.so
> Added shared library dependency arrow_python: .../Temp/arrow/dist/lib/libarrow_python.so
> -- Found the Parquet library: .../Temp/arrow/dist/lib/libparquet.so
> Added shared library dependency parquet: .../Temp/arrow/dist/lib/libparquet.so
> -- Checking for module 'plasma'
> -- Found plasma, version
> -- Plasma ABI version: 0.0.0
> -- Plasma SO version: 0
> -- Found the Plasma core library: .../Temp/arrow/dist/lib/libplasma.so
> -- Found Plasma executable: .../Temp/arrow/dist/bin/plasma_store
> Added shared library dependency libplasma: .../Temp/arrow/dist/lib/libplasma.so
> -- Configuring done
> -- Generating done
> -- Build files have been written to: .../Temp/arrow/arrow/python/build/temp.linux-x86_64-3.6
> -- Finished cmake for pyarrow
> -- Running cmake --build for pyarrow
> make
> Scanning dependencies of target lib_pyx
> [ 11%] Compiling Cython CXX source for lib...
> [ 11%] Built target lib_pyx
> Scanning dependencies of target lib
> [ 22%] Building CXX object CMakeFiles/lib.dir/lib.cxx.o
> [ 33%] Linking CXX shared module release/lib.cpython-36m-x86_64-linux-gnu.so
> [ 33%] Built target lib
> Scanning dependencies of target _parquet_pyx
> [ 44%] Compiling Cython CXX source for _parquet...
> [ 44%] Built target _parquet_pyx
> Scanning dependencies of target _parquet
> [ 55%] Building CXX object CMakeFiles/_parquet.dir/_parquet.cxx.o
> [ 66%] Linking CXX shared module release/_parquet.cpython-36m-x86_64-linux-gnu.so
> [ 66%] Built target _parquet
> Scanning dependencies of target plasma_pyx
> [ 77%] Compiling Cython CXX source for plasma...
> [ 77%] Built target plasma_pyx
> Scanning dependencies of target plasma
> [ 88%] Building CXX object CMakeFiles/plasma.dir/plasma.cxx.o
> [100%] Linking CXX shared module release/plasma.cpython-36m-x86_64-linux-gnu.so
> [100%] Built target plasma
> -- Finished cmake --build for pyarrow
> .../Temp/arrow/arrow/python/build/lib.linux-x86_64-3.6/pyarrow
> ['release/libarrow.so.0.0.0', 'release/libarrow.so.0', 'release/libarrow.so']
> release/libarrow.so.0.0.0
> ['release/libarrow_python.so.0.0.0', 'release/libarrow_python.so.0', 'release/libarrow_python.so']
> release/libarrow_python.so.0.0.0
> ['release/libplasma.so.0.0.0', 'release/libplasma.so.0', 'release/libplasma.so']
> release/libplasma.so.0.0.0
> ['release/libparquet.so.1.3.2', 'release/libparquet.so.1', 'release/libparquet.so']
> release/libparquet.so.1.3.2
> }}}}
> And after that it crashes because it cannot find {{arrow_boost_filesystem}} in {{build_prefix}} in {{_move_shared_libs_unix}} call which makes {{libs}} variable there empty.
> If I do:
> {{{{
> $ find . -name *.so
> ./build/lib.linux-x86_64-3.6/pyarrow/libparquet.so
> ./build/lib.linux-x86_64-3.6/pyarrow/libplasma.so
> ./build/lib.linux-x86_64-3.6/pyarrow/libarrow.so
> ./build/lib.linux-x86_64-3.6/pyarrow/libarrow_python.so
> ./build/temp.linux-x86_64-3.6/release/_parquet.cpython-36m-x86_64-linux-gnu.so
> ./build/temp.linux-x86_64-3.6/release/libparquet.so
> ./build/temp.linux-x86_64-3.6/release/libboost_filesystem.so
> ./build/temp.linux-x86_64-3.6/release/libplasma.so
> ./build/temp.linux-x86_64-3.6/release/libarrow.so
> ./build/temp.linux-x86_64-3.6/release/libboost_system.so
> ./build/temp.linux-x86_64-3.6/release/lib.cpython-36m-x86_64-linux-gnu.so
> ./build/temp.linux-x86_64-3.6/release/libboost_regex.so
> ./build/temp.linux-x86_64-3.6/release/libarrow_python.so
> ./build/temp.linux-x86_64-3.6/release/plasma.cpython-36m-x86_64-linux-gnu.so
> ./pyarrow/_parquet.cpython-36m-x86_64-linux-gnu.so
> ./pyarrow/lib.cpython-36m-x86_64-linux-gnu.so
> ./pyarrow/plasma.cpython-36m-x86_64-linux-gnu.so
> }}}}
> So it seems the issue is that the filename is {{libboost_filesystem.so}}, but it is trying to move {{libarrow_boost_filesystem.so}}?
> Changing lines in {{setup.py}} to:
> {{{{
> move_shared_libs(build_prefix, build_lib, "boost_filesystem")
> move_shared_libs(build_prefix, build_lib, "boost_system")
> move_shared_libs(build_prefix, build_lib, "boost_regex")
> }}}}
> seems to make it build.
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