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Posted to github@beam.apache.org by GitBox <gi...@apache.org> on 2022/09/08 13:32:26 UTC

[GitHub] [beam] damccorm opened a new pull request, #23087: Support models returning a dictionary of outputs

damccorm opened a new pull request, #23087:
URL: https://github.com/apache/beam/pull/23087

   The return value of the `forward` call for many models is a dictionary with the predictions along with more metadata. This supports that return type.
   
   Fixes #22240
   
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[GitHub] [beam] damccorm merged pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
damccorm merged PR #23087:
URL: https://github.com/apache/beam/pull/23087


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[GitHub] [beam] damccorm commented on pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
damccorm commented on PR #23087:
URL: https://github.com/apache/beam/pull/23087#issuecomment-1241117805

   > Overall, looks good! A few comments; and can you please add a test for SklearnModelHandlerPandas?
   
   Good catch - was an oversight on my part.
   
   Thanks for the feedback, I think I've responded to everything at this point!


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[GitHub] [beam] damccorm commented on a diff in pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
damccorm commented on code in PR #23087:
URL: https://github.com/apache/beam/pull/23087#discussion_r966325894


##########
sdks/python/apache_beam/ml/inference/pytorch_inference_test.py:
##########
@@ -63,6 +63,17 @@
              for f1, f2 in TWO_FEATURES_EXAMPLES]).reshape(-1, 1))
 ]
 
+TWO_FEATURES_DICT_OUT_PREDICTIONS = [
+    PredictionResult(ex, pred) for ex,
+    pred in zip(
+        TWO_FEATURES_EXAMPLES,
+        [{
+            "output1": torch.Tensor([f1 * 2.0 + f2 * 3 + 0.5]),
+            "output2": torch.Tensor([f1 * 2.0 + f2 * 3 + 0.5])
+        } for f1,
+         f2 in TWO_FEATURES_EXAMPLES])
+]

Review Comment:
   That's probably fine - I was aiming for greater completeness/simplicty modularity/DRY (see subheader [Make Your Tests Complete and Concise](https://abseil.io/resources/swe-book/html/ch12.html) for a more fleshed out philosophy),  but I agree this ends up being better. Done



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[GitHub] [beam] damccorm commented on pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
damccorm commented on PR #23087:
URL: https://github.com/apache/beam/pull/23087#issuecomment-1241985653

   Oh good to know - it looks like that is passing anyways with this change fortunately - https://ci-beam.apache.org/job/beam_PostCommit_Python37/5697/


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[GitHub] [beam] AnandInguva commented on pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
AnandInguva commented on PR #23087:
URL: https://github.com/apache/beam/pull/23087#issuecomment-1241972775

   The inference IT tests are enabled only on Python 3.7 and Python 3.9 post commit suites. (lowest and highest version)


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[GitHub] [beam] codecov[bot] commented on pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
codecov[bot] commented on PR #23087:
URL: https://github.com/apache/beam/pull/23087#issuecomment-1240825051

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[GitHub] [beam] damccorm commented on pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
damccorm commented on PR #23087:
URL: https://github.com/apache/beam/pull/23087#issuecomment-1240881174

   R: @yeandy 
   
   I ended up picking this one up as a good ramp up item, lmk if you think there's a better approach here though.


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[GitHub] [beam] yeandy commented on pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
yeandy commented on PR #23087:
URL: https://github.com/apache/beam/pull/23087#issuecomment-1241997074

   Sorry about misleading you with the 3.8 run. I always get confused which tests are enabled for which suites.


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[GitHub] [beam] github-actions[bot] commented on pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
github-actions[bot] commented on PR #23087:
URL: https://github.com/apache/beam/pull/23087#issuecomment-1240928989

   Stopping reviewer notifications for this pull request: review requested by someone other than the bot, ceding control


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[GitHub] [beam] yeandy commented on pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
yeandy commented on PR #23087:
URL: https://github.com/apache/beam/pull/23087#issuecomment-1241026741

   Let's also run postcommit to ensure the `test_torch_run_inference_bert_for_masked_lm` test passes.


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[GitHub] [beam] yeandy commented on a diff in pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
yeandy commented on code in PR #23087:
URL: https://github.com/apache/beam/pull/23087#discussion_r966233619


##########
sdks/python/apache_beam/ml/inference/pytorch_inference.py:
##########
@@ -281,6 +293,18 @@ def run_inference(
         batched_tensors = _convert_to_device(batched_tensors, self._device)
         key_to_batched_tensors[key] = batched_tensors
       predictions = model(**key_to_batched_tensors, **inference_args)
+      if isinstance(predictions, dict):
+        # Go from one dictionary of type: {key_type1: Iterable<val_type1>,
+        # key_type2: Iterable<val_type2>, ...} where each Iterable is of
+        # length batch_size, to a list of dictionaries:
+        # [{key_type1: value_type1, key_type2: value_type2}]
+        predictions_per_tensor = [
+            dict(zip(predictions, v)) for v in zip(*predictions.values())

Review Comment:
   nit: To be more explicit that we want the keys here
   ```suggestion
               dict(zip(predictions.keys(), v)) for v in zip(*predictions.values())
   ```



##########
sdks/python/apache_beam/ml/inference/pytorch_inference.py:
##########
@@ -164,6 +164,18 @@ def run_inference(
       batched_tensors = torch.stack(batch)
       batched_tensors = _convert_to_device(batched_tensors, self._device)
       predictions = model(batched_tensors, **inference_args)
+      if isinstance(predictions, dict):
+        # Go from one dictionary of type: {key_type1: Iterable<val_type1>,
+        # key_type2: Iterable<val_type2>, ...} where each Iterable is of
+        # length batch_size, to a list of dictionaries:
+        # [{key_type1: value_type1, key_type2: value_type2}]
+        predictions_per_tensor = [
+            dict(zip(predictions, v)) for v in zip(*predictions.values())
+        ]
+        return [
+            PredictionResult(x, y) for x,
+            y in zip(batch, predictions_per_tensor)
+        ]

Review Comment:
   Would it make sense to refactor the two occurrences of this into a helper?



##########
sdks/python/apache_beam/ml/inference/sklearn_inference.py:
##########
@@ -183,6 +195,18 @@ def run_inference(
     splits = [
         vectorized_batch.iloc[[i]] for i in range(vectorized_batch.shape[0])
     ]
+    if isinstance(predictions, dict):
+      # Go from one dictionary of type: {key_type1: Iterable<value_type1>,
+      # key_type2: Iterable<value_type2>, ...} where each Iterable is of
+      # length batch_size, to a list of dictionaries:
+      # [{key_type1: value_type1, key_type2: value_type2}]
+      predictions_per_split = [
+          dict(zip(predictions, v)) for v in zip(*predictions.values())
+      ]
+      return [
+          PredictionResult(example, inference) for example,
+          inference in zip(splits, predictions_per_split)
+      ]

Review Comment:
   Similarly to the Pytorch file, could we refactor this into a helper? Though it looks a bit more difficult since we're working with different types (numpy vs pandas) now, so I don't think we have to. It may make sense to explicitly keep the logic here to clarify. I'll leave this up to you.



##########
sdks/python/apache_beam/ml/inference/pytorch_inference_test.py:
##########
@@ -63,6 +63,17 @@
              for f1, f2 in TWO_FEATURES_EXAMPLES]).reshape(-1, 1))
 ]
 
+TWO_FEATURES_DICT_OUT_PREDICTIONS = [
+    PredictionResult(ex, pred) for ex,
+    pred in zip(
+        TWO_FEATURES_EXAMPLES,
+        [{
+            "output1": torch.Tensor([f1 * 2.0 + f2 * 3 + 0.5]),
+            "output2": torch.Tensor([f1 * 2.0 + f2 * 3 + 0.5])
+        } for f1,
+         f2 in TWO_FEATURES_EXAMPLES])
+]

Review Comment:
   Could we somehow use the existing `TWO_FEATURES_PREDICTIONS` to construct `TWO_FEATURES_DICT_OUT_PREDICTIONS` so that if the former changes the computation, the latter will follow?



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[GitHub] [beam] damccorm commented on a diff in pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
damccorm commented on code in PR #23087:
URL: https://github.com/apache/beam/pull/23087#discussion_r966326215


##########
sdks/python/apache_beam/ml/inference/sklearn_inference.py:
##########
@@ -183,6 +195,18 @@ def run_inference(
     splits = [
         vectorized_batch.iloc[[i]] for i in range(vectorized_batch.shape[0])
     ]
+    if isinstance(predictions, dict):
+      # Go from one dictionary of type: {key_type1: Iterable<value_type1>,
+      # key_type2: Iterable<value_type2>, ...} where each Iterable is of
+      # length batch_size, to a list of dictionaries:
+      # [{key_type1: value_type1, key_type2: value_type2}]
+      predictions_per_split = [
+          dict(zip(predictions, v)) for v in zip(*predictions.values())
+      ]
+      return [
+          PredictionResult(example, inference) for example,
+          inference in zip(splits, predictions_per_split)
+      ]

Review Comment:
   I think it can be refactored cleanly - done



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[GitHub] [beam] damccorm commented on pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
damccorm commented on PR #23087:
URL: https://github.com/apache/beam/pull/23087#issuecomment-1241118013

   Run Python 3.8 PostCommit


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[GitHub] [beam] yeandy commented on pull request #23087: Support models returning a dictionary of outputs

Posted by GitBox <gi...@apache.org>.
yeandy commented on PR #23087:
URL: https://github.com/apache/beam/pull/23087#issuecomment-1241028113

   Run Python 3.8 PostCommit


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