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Posted to issues@spark.apache.org by "Yuming Wang (JIRA)" <ji...@apache.org> on 2019/04/22 05:53:00 UTC
[jira] [Commented] (SPARK-27538) sparksql could not start in jdk11,
exception org.datanucleus.exceptions.NucleusException: The java type
java.lang.Long (jdbc-type='', sql-type="") cant be mapped for this
datastore. No mapping is available.
[ https://issues.apache.org/jira/browse/SPARK-27538?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16822889#comment-16822889 ]
Yuming Wang commented on SPARK-27538:
-------------------------------------
Support the JDK11 is still in progress: SPARK-24417
> sparksql could not start in jdk11, exception org.datanucleus.exceptions.NucleusException: The java type java.lang.Long (jdbc-type='', sql-type="") cant be mapped for this datastore. No mapping is available.
> --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
>
> Key: SPARK-27538
> URL: https://issues.apache.org/jira/browse/SPARK-27538
> Project: Spark
> Issue Type: Bug
> Components: SQL
> Affects Versions: 2.3.0, 2.4.1
> Environment: Machine：aarch64
> OS：Red Hat Enterprise Linux Server release 7.4
> Kernel：4.11.0-44.el7a
> spark version： spark-2.4.1
> java：openjdk version "11.0.2" 2019-01-15
> OpenJDK Runtime Environment AdoptOpenJDK (build 11.0.2+9)
> scala：2.11.12
> Reporter: dingwei2019
> Priority: Major
> Labels: features
>
> [root@172-19-18-8 spark-2.4.1-bin-hadoop2.7-bak]# bin/spark-sql
> WARNING: An illegal reflective access operation has occurred
> WARNING: Illegal reflective access by org.apache.spark.unsafe.Platform (file:/home/dingwei/spark-2.4.1-bin-x86/spark-2.4.1-bin-hadoop2.7-bak/jars/spark-unsafe_2.11-2.4.1.jar) to method java.nio.Bits.unaligned()
> WARNING: Please consider reporting this to the maintainers of org.apache.spark.unsafe.Platform
> WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
> WARNING: All illegal access operations will be denied in a future release
> 2019-04-22 11:27:34,419 WARN util.NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
> 2019-04-22 11:27:35,306 INFO metastore.HiveMetaStore: 0: Opening raw store with implemenation class:org.apache.hadoop.hive.metastore.ObjectStore
> 2019-04-22 11:27:35,330 INFO metastore.ObjectStore: ObjectStore, initialize called
> 2019-04-22 11:27:35,492 INFO DataNucleus.Persistence: Property hive.metastore.integral.jdo.pushdown unknown - will be ignored
> 2019-04-22 11:27:35,492 INFO DataNucleus.Persistence: Property datanucleus.cache.level2 unknown - will be ignored
> 2019-04-22 11:27:37,012 INFO metastore.ObjectStore: Setting MetaStore object pin classes with hive.metastore.cache.pinobjtypes="Table,StorageDescriptor,SerDeInfo,Partition,Database,Type,FieldSchema,Order"
> 2019-04-22 11:27:37,638 WARN DataNucleus.Query: Query for candidates of org.apache.hadoop.hive.metastore.model.MDatabase and subclasses resulted in no possible candidates
> The java type java.lang.Long (jdbc-type="", sql-type="") cant be mapped for this datastore. No mapping is available.
> org.datanucleus.exceptions.NucleusException: The java type java.lang.Long (jdbc-type="", sql-type="") cant be mapped for this datastore. No mapping is available.
> at org.datanucleus.store.rdbms.mapping.RDBMSMappingManager.getDatastoreMappingClass(RDBMSMappingManager.java:1215)
> at org.datanucleus.store.rdbms.mapping.RDBMSMappingManager.createDatastoreMapping(RDBMSMappingManager.java:1378)
> at org.datanucleus.store.rdbms.table.AbstractClassTable.addDatastoreId(AbstractClassTable.java:392)
> at org.datanucleus.store.rdbms.table.ClassTable.initializePK(ClassTable.java:1087)
> at org.datanucleus.store.rdbms.table.ClassTable.preInitialize(ClassTable.java:247)
> at org.datanucleus.store.rdbms.RDBMSStoreManager$ClassAdder.addClassTable(RDBMSStoreManager.java:3118)
> at org.datanucleus.store.rdbms.RDBMSStoreManager$ClassAdder.addClassTables(RDBMSStoreManager.java:2909)
> at org.datanucleus.store.rdbms.RDBMSStoreManager$ClassAdder.addClassTablesAndValidate(RDBMSStoreManager.java:3182)
> at org.datanucleus.store.rdbms.RDBMSStoreManager$ClassAdder.run(RDBMSStoreManager.java:2841)
> at org.datanucleus.store.rdbms.AbstractSchemaTransaction.execute(AbstractSchemaTransaction.java:122)
> at org.datanucleus.store.rdbms.RDBMSStoreManager.addClasses(RDBMSStoreManager.java:1605)
> at org.datanucleus.store.AbstractStoreManager.addClass(AbstractStoreManager.java:954)
> at org.datanucleus.store.rdbms.RDBMSStoreManager.getDatastoreClass(RDBMSStoreManager.java:679)
> at org.datanucleus.store.rdbms.query.RDBMSQueryUtils.getStatementForCandidates(RDBMSQueryUtils.java:408)
> at org.datanucleus.store.rdbms.query.JDOQLQuery.compileQueryFull(JDOQLQuery.java:947)
> at org.datanucleus.store.rdbms.query.JDOQLQuery.compileInternal(JDOQLQuery.java:370)
> at org.datanucleus.store.query.Query.executeQuery(Query.java:1744)
> at org.datanucleus.store.query.Query.executeWithArray(Query.java:1672)
> at org.datanucleus.store.query.Query.execute(Query.java:1654)
> at org.datanucleus.api.jdo.JDOQuery.execute(JDOQuery.java:221)
> at org.apache.hadoop.hive.metastore.MetaStoreDirectSql.ensureDbInit(MetaStoreDirectSql.java:183)
> at org.apache.hadoop.hive.metastore.MetaStoreDirectSql.<init>(MetaStoreDirectSql.java:137)
> at org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:295)
> at org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258)
> at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:76)
> at org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:136)
> at org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57)
> at org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66)
> at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593)
> at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571)
> at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620)
> at org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461)
> at org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66)
> at org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72)
> at org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762)
> at org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199)
> at org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74)
> at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
> at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
> at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490)
> at org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
> at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
> at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
> at org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
> at org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
> at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
> at org.apache.hadoop.hive.ql.metadata.Hive.getAllDatabases(Hive.java:1234)
> at org.apache.hadoop.hive.ql.metadata.Hive.reloadFunctions(Hive.java:174)
> at org.apache.hadoop.hive.ql.metadata.Hive.<clinit>(Hive.java:166)
> at org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
> at org.apache.spark.sql.hive.thriftserver.SparkSQLCLIDriver$.main(SparkSQLCLIDriver.scala:133)
> at org.apache.spark.sql.hive.thriftserver.SparkSQLCLIDriver.main(SparkSQLCLIDriver.scala)
> at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> at java.base/java.lang.reflect.Method.invoke(Method.java:566)
> at org.apache.spark.deploy.JavaMainApplication.start(SparkApplication.scala:52)
> at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:849)
> at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:167)
> at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:195)
> at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:86)
> at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:924)
> at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:933)
> at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
> 2019-04-22 11:27:37,644 WARN DataNucleus.Query: Query for candidates of org.apache.hadoop.hive.metastore.model.MTableColumnStatistics and subclasses resulted in no possible candidates
> The java type java.lang.Long (jdbc-type="", sql-type="") cant be mapped for this datastore. No mapping is available.
> org.datanucleus.exceptions.NucleusException: The java type java.lang.Long (jdbc-type="", sql-type="") cant be mapped for this datastore. No mapping is available.
> at org.datanucleus.store.rdbms.mapping.RDBMSMappingManager.getDatastoreMappingClass(RDBMSMappingManager.java:1215)
> at org.datanucleus.store.rdbms.mapping.RDBMSMappingManager.createDatastoreMapping(RDBMSMappingManager.java:1378)
> at org.datanucleus.store.rdbms.table.AbstractClassTable.addDatastoreId(AbstractClassTable.java:392)
> at org.datanucleus.store.rdbms.table.ClassTable.initializePK(ClassTable.java:1087)
> at org.datanucleus.store.rdbms.table.ClassTable.preInitialize(ClassTable.java:247)
> at org.datanucleus.store.rdbms.RDBMSStoreManager$ClassAdder.addClassTable(RDBMSStoreManager.java:3118)
> Now i use jdk11, If i change to jdk8, there will not produce this issue. i believe the problem is with datanucleus-rdbms-3.2.9.jar, may be it is because datanucleus-rdbms-3.2.9 do not support jdk11. beside, 3.2.9 is too old, i can not find the source code.
> is there anybody who can help me, thanks so much.
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