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Posted to issues@flink.apache.org by "Yun Gao (Jira)" <ji...@apache.org> on 2022/04/13 06:28:07 UTC

[jira] [Updated] (FLINK-17642) Exception while reading broken ORC file is hidden

     [ https://issues.apache.org/jira/browse/FLINK-17642?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]

Yun Gao updated FLINK-17642:
----------------------------
    Fix Version/s: 1.16.0

> Exception while reading broken ORC file is hidden
> -------------------------------------------------
>
>                 Key: FLINK-17642
>                 URL: https://issues.apache.org/jira/browse/FLINK-17642
>             Project: Flink
>          Issue Type: Improvement
>          Components: Connectors / ORC
>    Affects Versions: 1.8.3, 1.9.3, 1.10.1
>            Reporter: Nikola
>            Priority: Minor
>              Labels: auto-deprioritized-major
>             Fix For: 1.10.4, 1.15.0, 1.11.7, 1.16.0
>
>
> I have a simple setup of a batch job like this:
> {code:java}
> BatchTableEnvironment tableEnvFirst = BatchTableEnvironment.create(env);
> OrcTableSource orcTableSource = OrcTableSource.builder()
>  .path("path", true)
>  .forOrcSchema(ORC.getSchema())
>  .withConfiguration(hdfsConfig)
>  .build();
> tableEnvFirst.registerTableSource("table", orcTableSource);
> Table nnfTable = tableEnvFirst.sqlQuery(sqlString);
> return tableEnvFirst.toDataSet(nnfTable, Row.class);{code}
>   
> And that works just fine to fetch ORC files from hdfs as a DataSet.
> However, there are some ORC files which are broken. "Broken" means that they are invalid in some way and cannot be processed / fetch normally. They throw exceptions. Examples of those are:
> {code:java}
> org.apache.orc.FileFormatException: Malformed ORC file /user/hdfs/orcfile-1 Invalid postscript length 2 
> at org.apache.orc.impl.ReaderImpl.ensureOrcFooter(ReaderImpl.java:258) 
> at org.apache.orc.impl.ReaderImpl.extractFileTail(ReaderImpl.java:562) 
> at org.apache.orc.impl.ReaderImpl.<init>(ReaderImpl.java:370) 
> at org.apache.orc.OrcFile.createReader(OrcFile.java:342) 
> at org.apache.flink.orc.OrcRowInputFormat.open(OrcRowInputFormat.java:225) 
> at org.apache.flink.orc.OrcRowInputFormat.open(OrcRowInputFormat.java:63) 
> at org.apache.flink.runtime.operators.DataSourceTask.invoke(DataSourceTask.java:173) 
> at org.apache.flink.runtime.taskmanager.Task.doRun(Task.java:705) 
> at org.apache.flink.runtime.taskmanager.Task.run(Task.java:530) 
> at java.lang.Thread.run(Thread.java:748){code}
>  
> {code:java}
> com.google.protobuf.InvalidProtocolBufferException: Protocol message contained an invalid tag (zero). 
> at com.google.protobuf.InvalidProtocolBufferException.invalidTag(InvalidProtocolBufferException.java:89) 
> at com.google.protobuf.CodedInputStream.readTag(CodedInputStream.java:108) 
> at org.apache.orc.OrcProto$PostScript.<init>(OrcProto.java:18526) 
> at org.apache.orc.OrcProto$PostScript.<init>(OrcProto.java:18490) 
> at org.apache.orc.OrcProto$PostScript$1.parsePartialFrom(OrcProto.java:18628) 
> at org.apache.orc.OrcProto$PostScript$1.parsePartialFrom(OrcProto.java:18623) 
> at com.google.protobuf.AbstractParser.parseFrom(AbstractParser.java:89) 
> at com.google.protobuf.AbstractParser.parseFrom(AbstractParser.java:95) 
> at com.google.protobuf.AbstractParser.parseFrom(AbstractParser.java:49) 
> at org.apache.orc.OrcProto$PostScript.parseFrom(OrcProto.java:19022) 
> at org.apache.orc.impl.ReaderImpl.extractPostScript(ReaderImpl.java:436) 
> at org.apache.orc.impl.ReaderImpl.extractFileTail(ReaderImpl.java:564) 
> at org.apache.orc.impl.ReaderImpl.<init>(ReaderImpl.java:370) 
> at org.apache.orc.OrcFile.createReader(OrcFile.java:342) 
> at org.apache.flink.orc.OrcRowInputFormat.open(OrcRowInputFormat.java:225) 
> at org.apache.flink.orc.OrcRowInputFormat.open(OrcRowInputFormat.java:63) 
> at org.apache.flink.runtime.operators.DataSourceTask.invoke(DataSourceTask.java:173) 
> at org.apache.flink.runtime.taskmanager.Task.doRun(Task.java:705) 
> at org.apache.flink.runtime.taskmanager.Task.run(Task.java:530) 
> at java.lang.Thread.run(Thread.java:748){code}
>   
> Given that some specific files are broken, that's OK to throw exception. However, the issue is that I cannot catch those exceptions and they make my job to fail. I tried to wrap everything in a try-catch block just to see what I can catch and handle, but it seems that when flink runs it, it's not run from that place, but rather from DataSourceTask.invoke()
> I can digged a little bit to find out why don't I get an exception and I can see that {{OrcTableSource}} creates {{OrcRowInputFormat}} instance [here|#L157]] which then calls open() and open() has this signature: 
> {code:java}
> public void open(FileInputSplit fileSplit) throws IOException {{code}
>   
> So the open() throws the exception but I am not able to catch it. 
> Is what I am doing correct or is there any other way to handle exception coming from DataSourceTask.invoke()? In general my goal would be to ignore all broken/corrupted ORC files but that does not seem to be possible



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