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Posted to common-issues@hadoop.apache.org by "Steve Loughran (Jira)" <ji...@apache.org> on 2022/03/25 14:43:00 UTC
[jira] [Updated] (HADOOP-18173) S3a copyFromLocalOperation doesn't support single file
[ https://issues.apache.org/jira/browse/HADOOP-18173?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Steve Loughran updated HADOOP-18173:
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Summary: S3a copyFromLocalOperation doesn't support single file (was: AWS S3 copyFromLocalOperation doesn't support single file)
> S3a copyFromLocalOperation doesn't support single file
> ------------------------------------------------------
>
> Key: HADOOP-18173
> URL: https://issues.apache.org/jira/browse/HADOOP-18173
> Project: Hadoop Common
> Issue Type: Bug
> Components: fs/s3
> Affects Versions: 3.3.2
> Environment: Hadoop version 3.3.2
> Spark version 3.4.0-SNAPSHOT
> use minio:latest to mock S3 filesystem
>
> Reporter: qian
> Priority: Major
>
> Spark job uses aws s3 as fileSystem and calls
> {code:java}
> fs.copyFromLocalFile(delSrc, overwrite, src, dest)
> delSrc = false
> overwrite = true
> src = "/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar"
> dest = "s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar"{code}
> Then throw a PathIOException, message is as follow
> {code:java}
> Exception in thread "main" org.apache.spark.SparkException: Uploading file /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar failed...
> at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:332)
> at org.apache.spark.deploy.k8s.KubernetesUtils$.$anonfun$uploadAndTransformFileUris$1(KubernetesUtils.scala:277)
> at scala.collection.TraversableLike.$anonfun$map$1(TraversableLike.scala:286)
> at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
> at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
> at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
> at scala.collection.TraversableLike.map(TraversableLike.scala:286)
> at scala.collection.TraversableLike.map$(TraversableLike.scala:279)
> at scala.collection.AbstractTraversable.map(Traversable.scala:108)
> at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadAndTransformFileUris(KubernetesUtils.scala:275)
> at org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.$anonfun$getAdditionalPodSystemProperties$1(BasicDriverFeatureStep.scala:187)
> at scala.collection.immutable.List.foreach(List.scala:431)
> at org.apache.spark.deploy.k8s.features.BasicDriverFeatureStep.getAdditionalPodSystemProperties(BasicDriverFeatureStep.scala:178)
> at org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.$anonfun$buildFromFeatures$5(KubernetesDriverBuilder.scala:86) at scala.collection.LinearSeqOptimized.foldLeft(LinearSeqOptimized.scala:126)
> at scala.collection.LinearSeqOptimized.foldLeft$(LinearSeqOptimized.scala:122)
> at scala.collection.immutable.List.foldLeft(List.scala:91)
> at org.apache.spark.deploy.k8s.submit.KubernetesDriverBuilder.buildFromFeatures(KubernetesDriverBuilder.scala:84)
> at org.apache.spark.deploy.k8s.submit.Client.run(KubernetesClientApplication.scala:104)
> at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5(KubernetesClientApplication.scala:248)
> at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.$anonfun$run$5$adapted(KubernetesClientApplication.scala:242)
> at org.apache.spark.util.Utils$.tryWithResource(Utils.scala:2738)
> at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.run(KubernetesClientApplication.scala:242)
> at org.apache.spark.deploy.k8s.submit.KubernetesClientApplication.start(KubernetesClientApplication.scala:214)
> at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:958)
> at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:180)
> at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:203)
> at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:90)
> at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:1046)
> at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:1055)
> at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)Caused by: org.apache.spark.SparkException: Error uploading file spark-examples_2.12-3.4.0-SNAPSHOT.jar
> at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:355)
> at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileUri(KubernetesUtils.scala:328)
> ... 30 more
> Caused by: org.apache.hadoop.fs.PathIOException: `Cannot get relative path for URI:file:///Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar': Input/output error
> at apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.getFinalPath(CopyFromLocalOperation.java:365)
> at org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.uploadSourceFromFS(CopyFromLocalOperation.java:226)
> at org.apache.hadoop.fs.s3a.impl.CopyFromLocalOperation.execute(CopyFromLocalOperation.java:170)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.lambda$copyFromLocalFile$25(S3AFileSystem.java:3920)
> at org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.lambda$trackDurationOfOperation$5(IOStatisticsBinding.java:499) at org.apache.hadoop.fs.statistics.impl.IOStatisticsBinding.trackDuration(IOStatisticsBinding.java:444)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2337)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.trackDurationAndSpan(S3AFileSystem.java:2356)
> at org.apache.hadoop.fs.s3a.S3AFileSystem.copyFromLocalFile(S3AFileSystem.java:3913)
> at org.apache.spark.deploy.k8s.KubernetesUtils$.uploadFileToHadoopCompatibleFS(KubernetesUtils.scala:352)
> ... 31 more {code}
> I add some logs
> {code:java}
> 22/03/25 09:33:24 INFO KubernetesUtils: Uploading file: /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar to dest: s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar...
> 22/03/25 09:33:24 INFO S3AFileSystem: Copying local file from /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar to s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar
> 22/03/25 09:33:24 INFO CopyFromLocalOperation: Copying local file from /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar to s3a://spark/spark-upload-a703d8e7-8dd2-4e29-beca-b4df2fedefbd/spark-examples_2.12-3.4.0-SNAPSHOT.jar
> 22/03/25 09:33:24 INFO CopyFromLocalOperation: execute#CopyFromLocalOperation, sourceFile is /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar
> 22/03/25 09:33:24 INFO CopyFromLocalOperation: uploadSourceFromFS#CopyFromLocalOperation, localFile 1: path is LocatedFileStatus{path=file:/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar; isDirectory=false; length=1567474; replication=1; blocksize=33554432; modification_time=1647874074000; access_time=1647874074000; owner=hengzhen.sq; group=staff; permission=rw-r--r--; isSymlink=false; hasAcl=false; isEncrypted=false; isErasureCoded=false}
> 22/03/25 09:33:24 INFO CopyFromLocalOperation: getFinalPath#CopyFromLocalOperation, src is file:/Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar, source is /Users/hengzhen.sq/IdeaProjects/spark/dist/examples/jars/spark-examples_2.12-3.4.0-SNAPSHOT.jar {code}
> It looks like copyFromLocalOperation doesn't support single file.
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