You are viewing a plain text version of this content. The canonical link for it is here.
Posted to commits@taverna.apache.org by br...@apache.org on 2015/02/05 12:53:42 UTC
svn commit: r1657546 -
/incubator/taverna/site/trunk/content/introduction/works-with.md
Author: brenninc
Date: Thu Feb 5 11:53:42 2015
New Revision: 1657546
URL: http://svn.apache.org/r1657546
Log:
Filled in Works with…
Modified:
incubator/taverna/site/trunk/content/introduction/works-with.md
Modified: incubator/taverna/site/trunk/content/introduction/works-with.md
URL: http://svn.apache.org/viewvc/incubator/taverna/site/trunk/content/introduction/works-with.md?rev=1657546&r1=1657545&r2=1657546&view=diff
==============================================================================
--- incubator/taverna/site/trunk/content/introduction/works-with.md (original)
+++ incubator/taverna/site/trunk/content/introduction/works-with.md Thu Feb 5 11:53:42 2015
@@ -1,4 +1,4 @@
-Title:
+Title: Works withâ¦
Notice: Licensed to the Apache Software Foundation (ASF) under one
or more contributor license agreements. See the NOTICE file
distributed with this work for additional information
@@ -19,20 +19,77 @@ Notice: Licensed to the Apache Softwa
Taverna directly interfaces with a range of software tools and systems.
Currently Taverna works with the following:
- - [![alt text][1]][2]
- - <a href="http://www.biomart.org/" target="_blank"><img src="/pages/wp-content/uploads/2010/03/biomart.gif" alt="BioMart" width="61" height="19" /></a><br />
- - <a href="/introduction/works-with/biomart"> Biomart</a> </li>
- - <a href="http://sourceforge.net/p/soaplab/wiki/Home/" target="_blank"><img src="/pages/wp-content/uploads/2010/03/Soaplab.png" alt="SoapLab" width="33" height="25" /></a><br />
- - <a href="/introduction/works-with/soaplab/">SoapLab</a></li>
- - <a href="/documentation/taverna-plugins/taverna-2-x-plugins/#sadi_plugin"><img src="/pages/wp-content/uploads/2011/03/sadi-header-small.png" alt="SADI" /></a><br />
- - <a href="/introduction/works-with/sadi/"> SADI</a></li>
- - <li><a href="http://www.r-project.org/" target="_blank"><img src="/pages/wp-content/uploads/2010/03/Rshell.png" alt="RShell" width="29" height="21" /></a><br />
- - <a href="/introduction/works-with/r/">R</a></li>
- - <li><a href="http://www.bioconductor.org/" target="_blank"><img src="/pages/wp-content/uploads/2013/07/logo_bioconductor.gif" alt="Bioconductor" width="130" height="39" /></a><br />
- - <a href="/introduction/works-with/bioconductor/">Bioconductor</a></li>
- = A number of <a href="/documentation/taverna-plugins/taverna-2-x-plugins/">third party plugins</a></li>
-</ul>
+ - <a href="http://www.biomart.org/" target="_blank">
+ <img src="/img/biomart.gif" alt="BioMart" width="61" height="19" /></a>
+ [Biomart][1]
+ - <a href="http://sourceforge.net/p/soaplab/wiki/Home/" target="_blank">
+ <img src="/img/Soaplab.png" alt="SoapLab" width="33" height="25" /></a>
+ [SoapLab][2]</a>
+ - <a href="/documentation/taverna-plugins/taverna-2-x-plugins/#sadi_plugin">
+ <img src="/pages/wp-content/uploads/2011/03/sadi-header-small.png" alt="SADI" /></a>
+ [SADI][3]</a>
+ - <a href="http://www.r-project.org/" target="_blank">
+ <img src="/img/Rshell.png" alt="RShell" width="29" height="21" /></a>
+ [R][4]</a>
+ - <a href="http://www.bioconductor.org/" target="_blank">
+ <img src="/img/logo_bioconductor.gif" alt="Bioconductor" width="130" height="39" /></a>
+ [Bioconductor][5]</a>
+ - A number of [third party plugins][6]
+<a name="biomart"></a>
+##Biomart##
+ - <a href="http://www.biomart.org/" target="_blank">
+ <img src="/img/biomart.gif" alt="BioMart" width="61" height="19" ></a>
- [1]: /img/biomart.gif
- [2]: http://www.biomart.org/
\ No newline at end of file
+The [Biomart system][7] is a flexible data warehouse aimed at complex interlinked biological data sets.
+It enables the retrieval of large amounts of genomic data e.g. from Ensembl and Sanger, as well as Uniprot,
+ MSD datasets and many more.
+The [Biomart service][8] is one of the default Taverna services.
+
+<a name="soaplab"></a>
+##SoapLab##
+
+ - <a href="http://sourceforge.net/p/soaplab/wiki/Home/" target="_blank">
+ <img src="/img/Soaplab.png" alt="SoapLab" width="33" height="25" ></a>
+
+[SoapLab][9] services are command line applications, wrapped as SOAP services, and served from a Soaplab server.
+Soaplab is especially well suited for applications with well described input and output parameters
+(such as EMBOSS sequence analysis)
+
+<a name="sadi"></a>
+##SADI##
+
+ - <a href="/documentation/taverna-plugins/sadi_plugin">
+ <img src="/img/sadi-header-small.png" alt="SADI" ></a>
+Semantic Web services described using the SADI framework
+
+<a name="r"></a>
+##R##
+ - <a href="http://www.r-project.org/" target="_blank">
+ <img src="/img/Rshell.png" alt="RShell" width="29" height="21" ></a>
+
+[R][10] is a popular scripting language oriented towards statistical computing.
+The [Rshell][11] service in Taverna allows your workflow to include services that run R scripts on an
+ R installation.
+
+<a name="bioconductor"></a>
+##Bioconductor##
+
+ - <a href="http://www.bioconductor.org/" target="_blank">
+ <img src="/img/logo_bioconductor.gif" alt="Bioconductor" width="130" height="39" ></a><br />
+
+[Bioconductor][12] provides tools for the analysis and comprehension of high-throughput genomic data.
+Bioconductor uses the R statistical programming language, and is open source and open development
+
+ [1]: #biomart
+ [2]: #soaplab
+ [3]: #sadi
+ [4]: #r
+ [5]: #bioconductor
+ [6]: /documentation/taverna-plugins/taverna-2-x-plugins/
+ [7]: http://www.biomart.org/
+ [8]: http://dev.mygrid.org.uk/wiki/display/taverna/Biomart
+ [9]: http://sourceforge.net/p/soaplab/wiki/Home/
+ [10]: http://www.r-project.org/
+ [11]: http://dev.mygrid.org.uk/wiki/display/taverna23/Rshell
+ [12]: http://www.bioconductor.org/
\ No newline at end of file