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Posted to issues@arrow.apache.org by "paleolimbot (via GitHub)" <gi...@apache.org> on 2023/03/20 13:06:47 UTC
[GitHub] [arrow-adbc] paleolimbot opened a new issue, #530: Missing symbol `_iconv` when verifying go libraries with conda on MacOS El Capitan (x86)
paleolimbot opened a new issue, #530:
URL: https://github.com/apache/arrow-adbc/issues/530
I ran `USE_CONDA=1 TEST_GLIB=0 dev/release/verify-release-candidate.sh 0.3.0 1` on MacOS El Capitan (x86). The final error was:
```
/var/folders/4v/hvphchw50373drst9g5smz1w0000gn/T/arrow-adbc-0.3.0.XXXXX.ZCa0MmTG/apache-arrow-adbc-0.3.0/go/adbc /var/folders/4v/hvphchw50373drst9g5smz1w0000gn/T/arrow-adbc-0.3.0.XXXXX.ZCa0MmTG/apache-arrow-adbc-0.3.0
dyld: Symbol not found: _iconv
Referenced from: /usr/lib/libarchive.2.dylib
Expected in: /private/var/folders/4v/hvphchw50373drst9g5smz1w0000gn/T/arrow-adbc-0.3.0.XXXXX.ZCa0MmTG/mambaforge/envs/conda-source/lib/libiconv.2.dylib
in /usr/lib/libarchive.2.dylib
/Users/dewey/Desktop/rscratch/arrow-adbc/ci/scripts/go_build.sh: line 21: 52591 Abort trap: 6 go build -v ./...
```
The full log is here: https://gist.github.com/paleolimbot/7a8097a8fcb3730aea2624a2699aa271
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Re: [I] Missing symbol `_iconv` when verifying with conda on MacOS El Capitan (x86) [arrow-adbc]
Posted by "paleolimbot (via GitHub)" <gi...@apache.org>.
paleolimbot closed issue #530: Missing symbol `_iconv` when verifying with conda on MacOS El Capitan (x86)
URL: https://github.com/apache/arrow-adbc/issues/530
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[GitHub] [arrow-adbc] zeroshade commented on issue #530: Missing symbol `_iconv` when verifying with conda on MacOS El Capitan (x86)
Posted by "zeroshade (via GitHub)" <gi...@apache.org>.
zeroshade commented on issue #530:
URL: https://github.com/apache/arrow-adbc/issues/530#issuecomment-1476919490
This seems like an issue with Conda maybe? I'm not familiar enough with
macOS to really debug it much..... maybe something screwy with the
environment / the Go conda package?
On Mon, Mar 20, 2023 at 9:06 AM Dewey Dunnington ***@***.***>
wrote:
> I ran USE_CONDA=1 TEST_GLIB=0 dev/release/verify-release-candidate.sh
> 0.3.0 1 on MacOS El Capitan (x86). The final error was:
>
> /var/folders/4v/hvphchw50373drst9g5smz1w0000gn/T/arrow-adbc-0.3.0.XXXXX.ZCa0MmTG/apache-arrow-adbc-0.3.0/go/adbc /var/folders/4v/hvphchw50373drst9g5smz1w0000gn/T/arrow-adbc-0.3.0.XXXXX.ZCa0MmTG/apache-arrow-adbc-0.3.0
> dyld: Symbol not found: _iconv
> Referenced from: /usr/lib/libarchive.2.dylib
> Expected in: /private/var/folders/4v/hvphchw50373drst9g5smz1w0000gn/T/arrow-adbc-0.3.0.XXXXX.ZCa0MmTG/mambaforge/envs/conda-source/lib/libiconv.2.dylib
> in /usr/lib/libarchive.2.dylib
> /Users/dewey/Desktop/rscratch/arrow-adbc/ci/scripts/go_build.sh: line 21: 52591 Abort trap: 6 go build -v ./...
>
> The full log is here:
> https://gist.github.com/paleolimbot/7a8097a8fcb3730aea2624a2699aa271
>
> —
> Reply to this email directly, view it on GitHub
> <https://github.com/apache/arrow-adbc/issues/530>, or unsubscribe
> <https://github.com/notifications/unsubscribe-auth/AAEHQV24KHPPLCNVOBAZHTLW5BI7BANCNFSM6AAAAAAWBB6BKE>
> .
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> ID: ***@***.***>
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[GitHub] [arrow-adbc] paleolimbot commented on issue #530: Missing symbol `_iconv` when verifying with conda on MacOS El Capitan (x86)
Posted by "paleolimbot (via GitHub)" <gi...@apache.org>.
paleolimbot commented on issue #530:
URL: https://github.com/apache/arrow-adbc/issues/530#issuecomment-1476210126
This also affects glib verification...if I run verifying glib as well, I get:
```
dyld: Symbol not found: _iconv
Referenced from: /usr/lib/libarchive.2.dylib
Expected in: /private/var/folders/4v/hvphchw50373drst9g5smz1w0000gn/T/arrow-adbc-0.3.0.XXXXX.b1G3vojy/mambaforge/envs/conda-source/lib/libiconv.2.dylib
in /usr/lib/libarchive.2.dylib
/Users/dewey/Desktop/rscratch/arrow-adbc/ci/scripts/glib_test.sh: line 24: 59220 Abort trap: 6 bundle exec env DYLD_LIBRARY_PATH="${DYLD_LIBRARY_PATH}" ruby "${source_dir}/glib/test/run.rb"
Failed to verify release candidate. See /var/folders/4v/hvphchw50373drst9g5smz1w0000gn/T/arrow-adbc-0.3.0.XXXXX.b1G3vojy for details.
```
Full log: https://gist.github.com/paleolimbot/707264d43b324a78c31ceb22ec11edf5
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[GitHub] [arrow-adbc] lidavidm commented on issue #530: Missing symbol `_iconv` when verifying with conda on MacOS El Capitan (x86)
Posted by "lidavidm (via GitHub)" <gi...@apache.org>.
lidavidm commented on issue #530:
URL: https://github.com/apache/arrow-adbc/issues/530#issuecomment-1476260798
I'd guess this is similar to https://github.com/apache/arrow-adbc/commit/82973189b8126027a9b44facfe85b8b453d96b43 where we are mixing Conda and non-Conda libraries on accident somewhere.
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[GitHub] [arrow-adbc] lidavidm commented on issue #530: Missing symbol `_iconv` when verifying with conda on MacOS El Capitan (x86)
Posted by "lidavidm (via GitHub)" <gi...@apache.org>.
lidavidm commented on issue #530:
URL: https://github.com/apache/arrow-adbc/issues/530#issuecomment-1476927668
I think it's probably like the linked commit above, something along the lines of: we set DYLD_LIBRARY_PATH to the Conda prefix, and then we (indirectly, through Go?) invoke a system binary, which pulls the wrong library from Conda and then crashes. So yes, something screwy with Conda. Unfortunately, it's not clear what binary actually crashed/failed.
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[GitHub] [arrow-adbc] paleolimbot commented on issue #530: Missing symbol `_iconv` when verifying with conda on MacOS El Capitan (x86)
Posted by "paleolimbot (via GitHub)" <gi...@apache.org>.
paleolimbot commented on issue #530:
URL: https://github.com/apache/arrow-adbc/issues/530#issuecomment-1477152368
Based on the output I think the executables are `go` and `bundler` (maybe indirectly calling `ruby`) (at least some of which are on PATH before starting the script). When I get to it I'll try uninstalling brew's go to see if removing it from the path fixes things.
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[GitHub] [arrow-adbc] xhochy commented on issue #530: Missing symbol `_iconv` when verifying with conda on MacOS El Capitan (x86)
Posted by "xhochy (via GitHub)" <gi...@apache.org>.
xhochy commented on issue #530:
URL: https://github.com/apache/arrow-adbc/issues/530#issuecomment-1476331748
This might be a case where you want to explicitly pin to the system `libiconv`. These are two similar named but different implementations. Often, `/usr/lib/libiconv.dylib` is what you want, not the one in conda. This is a special case that I only have seen with `libiconv` and no other lib on macOS yet.
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Re: [I] Missing symbol `_iconv` when verifying with conda on MacOS El Capitan (x86) [arrow-adbc]
Posted by "paleolimbot (via GitHub)" <gi...@apache.org>.
paleolimbot commented on issue #530:
URL: https://github.com/apache/arrow-adbc/issues/530#issuecomment-1768814016
I haven't gotten this error when verifying any of the last two releases, so I can only assume it's fixed!
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