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Posted to commits@airavata.apache.org by di...@apache.org on 2018/08/01 20:01:30 UTC
[airavata] branch develop updated (bcf97ce -> 658550e)
This is an automated email from the ASF dual-hosted git repository.
dimuthuupe pushed a change to branch develop
in repository https://gitbox.apache.org/repos/asf/airavata.git.
from bcf97ce AIRAVATA-2842 Allow calls to getAccessibleAppModules
add 5f58b1b Fixing NPE when creating an Optional from null object
add 7a182e1 Forcefully making the job state as Cancelled once an Experiment cancellation is triggered
add 15c3987 Fetching the original task id which submitted the job when cancelling
add 0bcf435 Closing ssh session before getting the status code
add da4503d Updating helix version from 0.8.0 -> 0.8.1
add 6ef6c03 AIRAVATA-2757 Set default charset for profile_service
add 5cf113d Ansible: staging PGA instances inventory
add 20cb5ce Ignore realtime monitoring commands on failure
add e91c302 Adding user resource profile to Task Context
add 9703d13 Adding missing emails in email monitor config
add cccdbf3 Fixing the bug of scratch location having a trailing file separator
add 6d8082e Setting user level compute resource preferences
add 341d3d9 Adding missing emails to email job monitor ansible distribution
add f5aeb4b Merge branch 'develop' into staging
add 87b6b2f Minor logging improvement
add d5c2bdf Directing the stdout of curl monitoring commands to /dev/null
add 10749a7 Fixing broken helix download links
add abf24ff Ansibles for testing environment
add aa897d8 Fixing the bug of rabbitmq consumer threads being killed for unhandled exceptions
add a645e51 Improving batch queue validator logic
add 99d500a Adding recursive directory creation method to adaptors
add 6df7cbc Logging improvements
add 321b79e Logging improvements
add 0461052 Adding monitor logic to identify and remove stale ssh connections in the pool and reducing default sessions per connection to 1
add 5d667d4 Manually disconnecting stale connections
add 2de372e Setting default maximum sessions for a ssh connection to 1
add bb68c49 Setting max connection idle time to 10 minutes
add 93bfe76 Minor log level changes
add 2bbfd8c Merge branch 'develop' into staging
new 658550e Merge branch 'staging' into develop
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
.../scigap/staging/group_vars/all/vars.yml | 2 +-
.../pga_config/scigap/vars.yml | 17 +-
.../pga_config/scigap/vault.yml | 0
.../pga_config/seagrid/vars.yml | 17 +-
.../pga_config/seagrid/vault.yml | 0
.../pga_config/testdrive/vars.yml | 18 +--
.../pga_config/testdrive/vault.yml | 0
.../scigap/staging/pga_config/ultrascan/vars.yml | 2 +-
.../inventories/scigap/testing/files/airavata.jks | Bin 0 -> 2623 bytes
.../{staging => testing}/files/airavata_sym.jks | 0
.../scigap/testing/files/client_truststore.jks | Bin 0 -> 971 bytes
.../scigap/{staging => testing}/files/keycloak.jks | 0
.../{staging => testing}/group_vars/all/vars.yml | 8 +-
.../scigap/testing/group_vars/all/vault.yml | 33 ++++
dev-tools/ansible/inventories/scigap/testing/hosts | 27 ++++
.../pga_config/scigap/vars.yml | 19 +--
.../scigap/testing/pga_config/scigap/vault.yml | 18 +++
.../pga_config/seagrid/vars.yml | 19 +--
.../scigap/testing/pga_config/seagrid/vault.yml | 18 +++
.../pga_config/testdrive/vars.yml | 26 +--
.../scigap/testing/pga_config/testdrive/vault.yml | 18 +++
.../standalone/group_vars/helix/vars.yml | 2 +-
dev-tools/ansible/pga-scigap-staging.yml | 3 +
.../{pga-scigap-dev.yml => pga-scigap-testing.yml} | 0
.../templates/email-monitor/email-config.yaml.j2 | 28 +++-
.../apache/airavata/agents/api/AgentAdaptor.java | 2 +
.../airavata/helix/agent/ssh/SshAgentAdaptor.java | 7 +-
.../airavata/helix/adaptor/PoolingSSHJClient.java | 73 +++++++--
.../airavata/helix/adaptor/SSHJAgentAdaptor.java | 35 +++-
.../airavata/helix/impl/task/AiravataTask.java | 37 +++++
.../airavata/helix/impl/task/TaskContext.java | 8 +
.../task/cancel/RemoteJobCancellationTask.java | 5 +
.../airavata/helix/impl/task/env/EnvSetupTask.java | 6 +-
.../impl/task/submission/JobSubmissionTask.java | 4 +-
modules/airavata-helix/task-api/pom.xml | 2 +-
.../helix/core/support/adaptor/AgentStore.java | 4 +-
.../resources/email-monitor/conf/email-config.yaml | 28 +++-
.../core/validator/impl/BatchQueueValidator.java | 178 +++++++++++----------
.../cpi/impl/SimpleOrchestratorImpl.java | 5 +-
.../server/OrchestratorServerHandler.java | 10 +-
.../DeltaScripts/profile_service_schema_delta.sql | 1 +
41 files changed, 490 insertions(+), 190 deletions(-)
copy dev-tools/ansible/inventories/scigap/{production => staging}/pga_config/scigap/vars.yml (76%)
copy dev-tools/ansible/inventories/scigap/{production => staging}/pga_config/scigap/vault.yml (100%)
copy dev-tools/ansible/inventories/scigap/{production => staging}/pga_config/seagrid/vars.yml (78%)
copy dev-tools/ansible/inventories/scigap/{production => staging}/pga_config/seagrid/vault.yml (100%)
copy dev-tools/ansible/inventories/scigap/{production => staging}/pga_config/testdrive/vars.yml (74%)
copy dev-tools/ansible/inventories/scigap/{production => staging}/pga_config/testdrive/vault.yml (100%)
create mode 100644 dev-tools/ansible/inventories/scigap/testing/files/airavata.jks
copy dev-tools/ansible/inventories/scigap/{staging => testing}/files/airavata_sym.jks (100%)
create mode 100644 dev-tools/ansible/inventories/scigap/testing/files/client_truststore.jks
copy dev-tools/ansible/inventories/scigap/{staging => testing}/files/keycloak.jks (100%)
copy dev-tools/ansible/inventories/scigap/{staging => testing}/group_vars/all/vars.yml (95%)
create mode 100644 dev-tools/ansible/inventories/scigap/testing/group_vars/all/vault.yml
create mode 100644 dev-tools/ansible/inventories/scigap/testing/hosts
copy dev-tools/ansible/inventories/scigap/{production => testing}/pga_config/scigap/vars.yml (72%)
create mode 100644 dev-tools/ansible/inventories/scigap/testing/pga_config/scigap/vault.yml
copy dev-tools/ansible/inventories/scigap/{production => testing}/pga_config/seagrid/vars.yml (67%)
create mode 100644 dev-tools/ansible/inventories/scigap/testing/pga_config/seagrid/vault.yml
copy dev-tools/ansible/inventories/scigap/{develop => testing}/pga_config/testdrive/vars.yml (64%)
create mode 100644 dev-tools/ansible/inventories/scigap/testing/pga_config/testdrive/vault.yml
copy dev-tools/ansible/{pga-scigap-dev.yml => pga-scigap-testing.yml} (100%)
create mode 100644 modules/registry/release-migration-scripts/next/DeltaScripts/profile_service_schema_delta.sql
[airavata] 01/01: Merge branch 'staging' into develop
Posted by di...@apache.org.
This is an automated email from the ASF dual-hosted git repository.
dimuthuupe pushed a commit to branch develop
in repository https://gitbox.apache.org/repos/asf/airavata.git
commit 658550e35fd3dc08b8d4b79a42f45322e9868cfe
Merge: bcf97ce 2bbfd8c
Author: dimuthu <di...@gmail.com>
AuthorDate: Wed Aug 1 15:58:23 2018 -0400
Merge branch 'staging' into develop
.../scigap/staging/group_vars/all/vars.yml | 2 +-
.../pga_config/{ultrascan => scigap}/vars.yml | 31 ++--
.../scigap/staging/pga_config/scigap/vault.yml | 18 +++
.../pga_config/{ultrascan => seagrid}/vars.yml | 31 ++--
.../scigap/staging/pga_config/seagrid/vault.yml | 18 +++
.../pga_config/{ultrascan => testdrive}/vars.yml | 31 ++--
.../scigap/staging/pga_config/testdrive/vault.yml | 18 +++
.../scigap/staging/pga_config/ultrascan/vars.yml | 2 +-
.../inventories/scigap/testing/files/airavata.jks | Bin 0 -> 2623 bytes
.../scigap/testing/files/airavata_sym.jks | 30 ++++
.../scigap/testing/files/client_truststore.jks | Bin 0 -> 971 bytes
.../inventories/scigap/testing/files/keycloak.jks | 143 +++++++++++++++++
.../{staging => testing}/group_vars/all/vars.yml | 8 +-
.../scigap/testing/group_vars/all/vault.yml | 33 ++++
dev-tools/ansible/inventories/scigap/testing/hosts | 27 ++++
.../pga_config/scigap}/vars.yml | 33 ++--
.../scigap/testing/pga_config/scigap/vault.yml | 18 +++
.../pga_config/seagrid}/vars.yml | 33 ++--
.../scigap/testing/pga_config/seagrid/vault.yml | 18 +++
.../pga_config/testdrive}/vars.yml | 33 ++--
.../scigap/testing/pga_config/testdrive/vault.yml | 18 +++
.../standalone/group_vars/helix/vars.yml | 2 +-
dev-tools/ansible/pga-scigap-staging.yml | 3 +
...a-scigap-staging.yml => pga-scigap-testing.yml} | 4 +-
.../templates/email-monitor/email-config.yaml.j2 | 28 +++-
.../apache/airavata/agents/api/AgentAdaptor.java | 2 +
.../airavata/helix/agent/ssh/SshAgentAdaptor.java | 7 +-
.../airavata/helix/adaptor/PoolingSSHJClient.java | 73 +++++++--
.../airavata/helix/adaptor/SSHJAgentAdaptor.java | 35 +++-
.../airavata/helix/impl/task/AiravataTask.java | 37 +++++
.../airavata/helix/impl/task/TaskContext.java | 8 +
.../task/cancel/RemoteJobCancellationTask.java | 5 +
.../airavata/helix/impl/task/env/EnvSetupTask.java | 6 +-
.../impl/task/submission/JobSubmissionTask.java | 4 +-
modules/airavata-helix/task-api/pom.xml | 2 +-
.../helix/core/support/adaptor/AgentStore.java | 4 +-
.../resources/email-monitor/conf/email-config.yaml | 28 +++-
.../core/validator/impl/BatchQueueValidator.java | 178 +++++++++++----------
.../cpi/impl/SimpleOrchestratorImpl.java | 5 +-
.../server/OrchestratorServerHandler.java | 10 +-
.../DeltaScripts/profile_service_schema_delta.sql | 1 +
41 files changed, 772 insertions(+), 215 deletions(-)