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Posted to issues@airavata.apache.org by "Eroma (JIRA)" <ji...@apache.org> on 2017/05/15 16:04:04 UTC
[jira] [Closed] (AIRAVATA-2383) LSF walltime calculation
[ https://issues.apache.org/jira/browse/AIRAVATA-2383?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel ]
Eroma closed AIRAVATA-2383.
---------------------------
tested and verified the wall time issue fix in
https://scigw.oii.org
> LSF walltime calculation
> ------------------------
>
> Key: AIRAVATA-2383
> URL: https://issues.apache.org/jira/browse/AIRAVATA-2383
> Project: Airavata
> Issue Type: Bug
> Reporter: Marcus Christie
> Assignee: Marcus Christie
>
> LSF script walltime format is wrong. Here's an example script created:
> {noformat}
> #!/bin/bash
> # LSF batch job submission script generated by Apache Airavata
> #BSUB -L /bin/bash
> #BSUB -q short
> #BSUB -n 1
> #BSUB -J A1460597667
> #BSUB -u gw56jobs@scigap.org
> #BSUB -W 00:30:00
> #BSUB -o /scratch/scigap0/PROCESS_01a85937-e308-498e-b14a-e0529135f046/Quantum_Espresso.stdout
> #BSUB -e /scratch/scigap0/PROCESS_01a85937-e308-498e-b14a-e0529135f046/Quantum_Espresso.stderr
> module load icc/13.0.1 openmpi/1.6.5 espresso/5.3.0
> cd /scratch/scigap0/PROCESS_01a85937-e308-498e-b14a-e0529135f046
> mpirun -np /opt/apps/icc-13.0.1/openmpi-1.6.5/espresso/5.3.0/bin/pw.x < Al.sample.in > Al.sample.out
> {noformat}
> Walltime is the {{#BSUB -W 00:30:00}} parameter. It should be {{#BSUB -W 00:30}} because walltime in LSF is HH:MM.
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